HHsearch alignment for GI: 254780889 and conserved domain: cd04596
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.87 E-value=1.1e-21 Score=174.98 Aligned_cols=108 Identities=29% Similarity=0.415 Sum_probs=101.4
Q ss_pred ECCCEEEECCCCHHHHHHHHHHHCCCCEEEECCCCEEEEEEEEHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 52878994654303456566760504167866886027887235450014344672440026786325730358999999
Q gi|254780889|r 99 VVNPVTISPYATLADALALMKKYSISGIPVVESDVGKLVGILTNRDVRFASNAQQAVGELMTRNLITVKKTVNLENAKAL 178 (493)
Q Consensus 99 I~dPVti~pd~TI~ea~~lm~~~~is~iPVVD~~~gkLiGIVT~rDir~~~~~~~~V~eiMt~~litv~~~~~l~eA~~i 178 (493)
T Consensus 1 ~~dv~~l~p~~tv~~a~~lm~~~~~~~~PVvd~~-~~lvGivt~~Di~~~-~~~~~v~~iM~~~~~~v~~~~~~~~~~~~ 78 (108)
T cd04596 1 LEDTGYLTTTDTVKDWHELNKETGHSRFPVVDEK-NKVVGIVTSKDVAGK-DPDTTIEKVMTKNPITVNPKTSVASVAHM 78 (108)
T ss_pred CCCCEEECCCCCHHHHHHHHHHHCCCEEEEECCC-CEEEEEEEHHHHHHC-CCCCCHHHHEECCCCCCCCCCCHHHHHHH
T ss_conf 9988898999979999999998599889999689-909999997997517-98872678500476205999889999999
Q ss_pred HHHCCCCEEEEECCCCCEEEEEEECCCHHC
Q ss_conf 986553306457479978688980210001
Q gi|254780889|r 179 LHQHRIEKLLVVDDDGCCIGLITVKDIERS 208 (493)
Q Consensus 179 M~~~ki~~LPVVDe~g~LvGIIT~~DIlk~ 208 (493)
T Consensus 79 m~~~~~~~lPVVde~~~lvGiIT~~Dil~A 108 (108)
T cd04596 79 MIWEGIEMLPVVDDNKKLLGIISRQDVLKA 108 (108)
T ss_pred HHHHCCCEEEEECCCCEEEEEEEHHHHHCC
T ss_conf 998498778999169959999997996319