HHsearch alignment for GI: 254780889 and conserved domain: cd04597
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.95 E-value=1e-09 Score=89.13 Aligned_cols=61 Identities=33% Similarity=0.543 Sum_probs=56.2
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCEEEEEEECCCHHC
Q ss_conf 4344672440026786325730358999999986553306457479978688980210001
Q gi|254780889|r 148 ASNAQQAVGELMTRNLITVKKTVNLENAKALLHQHRIEKLLVVDDDGCCIGLITVKDIERS 208 (493)
Q Consensus 148 ~~~~~~~V~eiMt~~litv~~~~~l~eA~~iM~~~ki~~LPVVDe~g~LvGIIT~~DIlk~ 208 (493)
T Consensus 53 i~~v~~qV~DIm~~~~vti~~~~sl~eA~~lM~e~~i~~LPVVD~~g~l~GiIT~~DIAe~ 113 (113)
T cd04597 53 LADVHPRVRDVINRKPVTARPNDPLREALNLMHEHNIRTLPVVDDDGTPAGIITLLDLAEK 113 (113)
T ss_pred CCCCCCHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCEEEEEEEHHHHHCC
T ss_conf 2156505666313788341999829999999998499878698899939999877874357