HHsearch alignment for GI: 254780889 and conserved domain: cd04602
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=98.40 E-value=2e-06 Score=65.57 Aligned_cols=47 Identities=15% Similarity=0.309 Sum_probs=38.8
Q ss_pred CCCCCCCCCCCHHHHHHHHHHCCCCEEEEECC---CCCEEEEEEECCCHH
Q ss_conf 78632573035899999998655330645747---997868898021000
Q gi|254780889|r 161 RNLITVKKTVNLENAKALLHQHRIEKLLVVDD---DGCCIGLITVKDIER 207 (493)
Q Consensus 161 ~~litv~~~~~l~eA~~iM~~~ki~~LPVVDe---~g~LvGIIT~~DIlk 207 (493)
T Consensus 2 ~dPvtv~p~~tv~ea~~lm~~~~~~~~pVvd~g~~~~klvGIvT~rDi~~ 51 (114)
T cd04602 2 TDPSVLSPDHTVADVLEIKEKKGFSGIPVTEDGKSGGKLLGIVTSRDIDF 51 (114)
T ss_pred CCCEEECCCCCHHHHHHHHHHHCCCEEEEEECCCCCCEEEEEEEHHHHHH
T ss_conf 88999799899999999999719877999965776896999999789523