HHsearch alignment for GI: 254780889 and conserved domain: cd04606
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.69 E-value=8.5e-17 Score=139.90 Aligned_cols=103 Identities=27% Similarity=0.490 Sum_probs=93.8
Q ss_pred EEECCCCHHHHHHHHHHHC-----CCCEEEECCCCEEEEEEEEHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 9946543034565667605-----04167866886027887235450014344672440026786325730358999999
Q gi|254780889|r 104 TISPYATLADALALMKKYS-----ISGIPVVESDVGKLVGILTNRDVRFASNAQQAVGELMTRNLITVKKTVNLENAKAL 178 (493)
Q Consensus 104 ti~pd~TI~ea~~lm~~~~-----is~iPVVD~~~gkLiGIVT~rDir~~~~~~~~V~eiMt~~litv~~~~~l~eA~~i 178 (493)
T Consensus 1 ~~~~~~TV~eai~~lr~~~~~~~~~~~i~Vvd~~-~~l~G~vt~~dll~-~~~~~~v~~iM~~~~~~v~~~~~~~~a~~~ 78 (109)
T cd04606 1 AVREDWTVGEALEYLRRNADDPETIYYIYVVDEE-GRLLGVVSLRDLLL-ADPDTPVSDIMDTDVISVSADDDQEEVARL 78 (109)
T ss_pred CCCCCCCHHHHHHHHHHCCCCCCEEEEEEEECCC-CEEEEEEEHHHHHH-CCCCCCHHHHHCCCEEECCCCCCHHHHHHH
T ss_conf 9699889999999998518885617799999799-97999998677224-188871666300213633799989999999
Q ss_pred HHHCCCCEEEEECCCCCEEEEEEECCCHHC
Q ss_conf 986553306457479978688980210001
Q gi|254780889|r 179 LHQHRIEKLLVVDDDGCCIGLITVKDIERS 208 (493)
Q Consensus 179 M~~~ki~~LPVVDe~g~LvGIIT~~DIlk~ 208 (493)
T Consensus 79 m~~~~~~~lPVVd~~~~lvGiIt~~Di~~~ 108 (109)
T cd04606 79 FEKYDLLALPVVDEEGRLVGIITVDDVIDV 108 (109)
T ss_pred HHHHCCCEEEEECCCCEEEEEEEHHHHHHH
T ss_conf 998527604689889979999996896844