HHsearch alignment for GI: 254780889 and conserved domain: cd04609

>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=99.74  E-value=1.3e-17  Score=145.70  Aligned_cols=104  Identities=30%  Similarity=0.499  Sum_probs=93.1

Q ss_pred             CCEEEECCCCHHHHHHHHHHHCCCCEEEECCCCEEEEEEEEHHHHCC-----CCCCCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf             87899465430345656676050416786688602788723545001-----4344672440026786325730358999
Q gi|254780889|r  101 NPVTISPYATLADALALMKKYSISGIPVVESDVGKLVGILTNRDVRF-----ASNAQQAVGELMTRNLITVKKTVNLENA  175 (493)
Q Consensus       101 dPVti~pd~TI~ea~~lm~~~~is~iPVVD~~~gkLiGIVT~rDir~-----~~~~~~~V~eiMt~~litv~~~~~l~eA  175 (493)
T Consensus         2 dvvtv~p~~tl~~a~~~m~~~~i~~lpVvd~--~~lvGiit~~Di~~~~~~~~~~~~~~v~~iM~~~~~~v~~~~~l~~~   79 (110)
T cd04609           2 DVVSVAPDDTVSQAIERMREYGVSQLPVVDD--GRVVGSIDESDLLDALIEGKAKFSLPVREVMGEPLPTVDPDAPIEEL   79 (110)
T ss_pred             CEEEECCCCCHHHHHHHHHHCCCCEEEEEEC--CEEEEEEEHHHHHHHHHCCCCCCCCEEEEEEECCCEEECCCCCHHHH
T ss_conf             8069999497999999999819988999989--99999999999999986387646876984567594597898949999


Q ss_pred             HHHHHHCCCCEEEEECCCCCEEEEEEECCCHHC
Q ss_conf             999986553306457479978688980210001
Q gi|254780889|r  176 KALLHQHRIEKLLVVDDDGCCIGLITVKDIERS  208 (493)
Q Consensus       176 ~~iM~~~ki~~LPVVDe~g~LvGIIT~~DIlk~  208 (493)
T Consensus        80 ~~~~~~~~--~~~vV~~~g~lvGIvT~~Dil~~  110 (110)
T cd04609          80 SELLDRGN--VAVVVDEGGKFVGIITRADLLKY  110 (110)
T ss_pred             HHHHHHCC--CCEEEECCCEEEEEEEHHHHHCC
T ss_conf             99887679--82499619999999983685294