HHsearch alignment for GI: 254780889 and conserved domain: cd04610
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.86 E-value=2.8e-21 Score=172.05 Aligned_cols=106 Identities=33% Similarity=0.582 Sum_probs=100.2
Q ss_pred CCCEEEECCCCHHHHHHHHHHHCCCCEEEECCCCEEEEEEEEHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 28789946543034565667605041678668860278872354500143446724400267863257303589999999
Q gi|254780889|r 100 VNPVTISPYATLADALALMKKYSISGIPVVESDVGKLVGILTNRDVRFASNAQQAVGELMTRNLITVKKTVNLENAKALL 179 (493)
Q Consensus 100 ~dPVti~pd~TI~ea~~lm~~~~is~iPVVD~~~gkLiGIVT~rDir~~~~~~~~V~eiMt~~litv~~~~~l~eA~~iM 179 (493)
T Consensus 2 kdvvtv~~d~tv~ea~~~m~~~~~~~~pVvd~--~~lvGivt~~Dll~~-~~~~~v~~iM~~~~~tv~~~~~l~~a~~~m 78 (107)
T cd04610 2 RDVITVSPDNTVKDVIKLIKETGHDGFPVVDN--GKVVGIVSARDLLGK-DPDETVEEIMSKDLVVAVPEMDIMDAARVM 78 (107)
T ss_pred CCCEEECCCCCHHHHHHHHHHHCCCEEEEEEC--CEEEEEEEHHHHCCC-CCCCCHHHHCCCCCCCCCCCCCHHHHHHHH
T ss_conf 88099899295999999999759978999989--999998876453159-987726786057860169998699999999
Q ss_pred HHCCCCEEEEECCCCCEEEEEEECCCHHC
Q ss_conf 86553306457479978688980210001
Q gi|254780889|r 180 HQHRIEKLLVVDDDGCCIGLITVKDIERS 208 (493)
Q Consensus 180 ~~~ki~~LPVVDe~g~LvGIIT~~DIlk~ 208 (493)
T Consensus 79 ~~~~~~~lpVvde~g~lvGiiT~~Dilra 107 (107)
T cd04610 79 FRTGISKLPVVDENNNLVGIITNTDVIRS 107 (107)
T ss_pred HHHCCCEEEEECCCCEEEEEEEHHHHHCC
T ss_conf 98299689699239989999994784439