HHsearch alignment for GI: 254780889 and conserved domain: cd04612
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=99.81 E-value=1.2e-19 Score=160.47 Aligned_cols=107 Identities=36% Similarity=0.519 Sum_probs=98.4
Q ss_pred CCCEEEECCCCHHHHHHHHHHHCCCCEEEECCCCEEEEEEEEHHHHCCC----CCCCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 2878994654303456566760504167866886027887235450014----344672440026786325730358999
Q gi|254780889|r 100 VNPVTISPYATLADALALMKKYSISGIPVVESDVGKLVGILTNRDVRFA----SNAQQAVGELMTRNLITVKKTVNLENA 175 (493)
Q Consensus 100 ~dPVti~pd~TI~ea~~lm~~~~is~iPVVD~~~gkLiGIVT~rDir~~----~~~~~~V~eiMt~~litv~~~~~l~eA 175 (493)
T Consensus 1 Pdvvtv~p~~tl~~a~~~m~~~~~~~lpVvd~--~~l~Givt~~di~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a 78 (111)
T cd04612 1 PDVVTVPVDLTVDEVLALMFGERHRGYPVVDD--GRLVGIVTLADIRRVPAEGREATVLVGDVMTRDPVTASPDETLRDA 78 (111)
T ss_pred CCCEEECCCCCHHHHHHHHHHCCCCEEEEEEC--CEEEEEEEHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCHHHH
T ss_conf 98499999295999999999719948999999--9999999899999877514777756999970796052999979999
Q ss_pred HHHHHHCCCCEEEEECCCCCEEEEEEECCCHHC
Q ss_conf 999986553306457479978688980210001
Q gi|254780889|r 176 KALLHQHRIEKLLVVDDDGCCIGLITVKDIERS 208 (493)
Q Consensus 176 ~~iM~~~ki~~LPVVDe~g~LvGIIT~~DIlk~ 208 (493)
T Consensus 79 ~~~m~~~~~~~lpVvd~~g~l~GiiT~~DilrA 111 (111)
T cd04612 79 LKRMAERDIGRLPVVDDSGRLVGIVSRSDLLRA 111 (111)
T ss_pred HHHHHHCCCCEEEEEECCCEEEEEEEHHHHHCC
T ss_conf 999997698199999689989999986886349