HHsearch alignment for GI: 254780889 and conserved domain: cd04620
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.85 E-value=6.1e-21 Score=169.62 Aligned_cols=108 Identities=35% Similarity=0.565 Sum_probs=97.2
Q ss_pred CCCEEEECCCCHHHHHHHHHHHCCCCEEEECCCCEEEEEEEEHHHHCC-----CCCCCCCCCCCCCCCCCCCCCCCC--H
Q ss_conf 287899465430345656676050416786688602788723545001-----434467244002678632573035--8
Q gi|254780889|r 100 VNPVTISPYATLADALALMKKYSISGIPVVESDVGKLVGILTNRDVRF-----ASNAQQAVGELMTRNLITVKKTVN--L 172 (493)
Q Consensus 100 ~dPVti~pd~TI~ea~~lm~~~~is~iPVVD~~~gkLiGIVT~rDir~-----~~~~~~~V~eiMt~~litv~~~~~--l 172 (493)
T Consensus 1 r~pitv~pd~tv~ea~~~M~~~~~~~~~vV~~~-~~lvGIvT~~Di~r~~~~~~~~~~~~v~~vMt~~~itv~~~~~~~i 79 (115)
T cd04620 1 RHPLTVTPDTPVADAIALMSQQGDSSCVLVVEK-GRLLGIFTERDIVRLTAIGKDLSDLPIGEVMTQPVVTLQESEIQDI 79 (115)
T ss_pred CCCEEECCCCCHHHHHHHHHHCCCCEEEEECCC-CEEEEEEEHHHHHHHHHCCCCCCCCCHHHHCCCCCEEECCCCCCCH
T ss_conf 969996991999999999998399469999379-9299999869999999859981348988963689679838997269
Q ss_pred HHHHHHHHHCCCCEEEEECCCCCEEEEEEECCCHHC
Q ss_conf 999999986553306457479978688980210001
Q gi|254780889|r 173 ENAKALLHQHRIEKLLVVDDDGCCIGLITVKDIERS 208 (493)
Q Consensus 173 ~eA~~iM~~~ki~~LPVVDe~g~LvGIIT~~DIlk~ 208 (493)
T Consensus 80 ~~a~~~M~~~~i~~lpVvd~~g~lvGiit~~Dilkv 115 (115)
T cd04620 80 FTALSLFRQHQIRHLPVLDDQGQLIGLVTAESIRQV 115 (115)
T ss_pred HHHHHHHHHCCEEEEEEECCCCEEEEEEEHHHCCCC
T ss_conf 999999875595289999579979999992562329