HHsearch alignment for GI: 254780889 and conserved domain: cd04622

>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.82  E-value=4.1e-20  Score=163.68  Aligned_cols=107  Identities=36%  Similarity=0.687  Sum_probs=97.9

Q ss_pred             CCCEEEECCCCHHHHHHHHHHHCCCCEEEECCCCEEEEEEEEHHHH--CC----CCCCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf             2878994654303456566760504167866886027887235450--01----43446724400267863257303589
Q gi|254780889|r  100 VNPVTISPYATLADALALMKKYSISGIPVVESDVGKLVGILTNRDV--RF----ASNAQQAVGELMTRNLITVKKTVNLE  173 (493)
Q Consensus       100 ~dPVti~pd~TI~ea~~lm~~~~is~iPVVD~~~gkLiGIVT~rDi--r~----~~~~~~~V~eiMt~~litv~~~~~l~  173 (493)
T Consensus         1 r~~vti~~~~tl~~a~~~m~~~~~~~v~V~d~--~~~vGiiT~~Di~~~~~~~~~~~~~~~v~~iM~~~~i~v~~~~~l~   78 (113)
T cd04622           1 RDVVTVSPDDTIREAARLMREHDVGALPVCEN--DRLVGIVTDRDIVVRAVAEGRDPDTTTVGDVMTRGVVTVTEDDDVD   78 (113)
T ss_pred             CCCEEECCCCCHHHHHHHHHHCCCCEEEEEEC--CEEEEEEECHHHHHHHHHCCCCHHHCCHHHHHCCCCEEEECCCCHH
T ss_conf             99779689398999999999729988999989--9999999632788999973998200776786415767998899879


Q ss_pred             HHHHHHHHCCCCEEEEECCCCCEEEEEEECCCHHC
Q ss_conf             99999986553306457479978688980210001
Q gi|254780889|r  174 NAKALLHQHRIEKLLVVDDDGCCIGLITVKDIERS  208 (493)
Q Consensus       174 eA~~iM~~~ki~~LPVVDe~g~LvGIIT~~DIlk~  208 (493)
T Consensus        79 ~a~~~m~~~~i~~lpVvd~~~~~vGiIt~~Dilra  113 (113)
T cd04622          79 EAARLMREHQVRRLPVVDDDGRLVGIVSLGDLARA  113 (113)
T ss_pred             HHHHHHHHCCCCEEEEEECCCEEEEEEEHHHHHCC
T ss_conf             99999985796589999089989999997995477