HHsearch alignment for GI: 254780889 and conserved domain: cd04624
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.82 E-value=5.2e-20 Score=162.97 Aligned_cols=107 Identities=32% Similarity=0.544 Sum_probs=99.5
Q ss_pred CCCEEEECCCCHHHHHHHHHHHCCCCEEEECCCCEEEEEEEEHHHHCC----CCCCCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 287899465430345656676050416786688602788723545001----4344672440026786325730358999
Q gi|254780889|r 100 VNPVTISPYATLADALALMKKYSISGIPVVESDVGKLVGILTNRDVRF----ASNAQQAVGELMTRNLITVKKTVNLENA 175 (493)
Q Consensus 100 ~dPVti~pd~TI~ea~~lm~~~~is~iPVVD~~~gkLiGIVT~rDir~----~~~~~~~V~eiMt~~litv~~~~~l~eA 175 (493)
T Consensus 1 r~vvtv~~~~tl~ea~~~m~~~~~~~~~Vvd~~-~~lvGiiT~~Di~~~~~~~~~~~~~v~~~m~~~~~tv~~~~~l~~a 79 (112)
T cd04624 1 RPVVTVDPDTSIREAAKLMAEENVGSVVVVDPD-ERPIGIVTERDIVRAVAAGIDLDTPVSEIMTRDLVTVDPDEPVAEA 79 (112)
T ss_pred CCCEEECCCCCHHHHHHHHHHCCCCEEEEECCC-CCEEEEEECCHHHHHHHCCCCCCCCEEEEECCCCEEECCCCCHHHH
T ss_conf 997897893959999999986299889999399-8299999820458898648743442045651671678799989999
Q ss_pred HHHHHHCCCCEEEEECCCCCEEEEEEECCCHH
Q ss_conf 99998655330645747997868898021000
Q gi|254780889|r 176 KALLHQHRIEKLLVVDDDGCCIGLITVKDIER 207 (493)
Q Consensus 176 ~~iM~~~ki~~LPVVDe~g~LvGIIT~~DIlk 207 (493)
T Consensus 80 ~~~m~~~~~~~l~Vvd~~g~lvGiit~~Dilk 111 (112)
T cd04624 80 AKLMRKNNIRHHLVVDKGGELVGVISIRDLVR 111 (112)
T ss_pred HHHHHHCCCEEEEEECCCCEEEEEEEHHHHCC
T ss_conf 99999749839989989999999998077256