HHsearch alignment for GI: 254780889 and conserved domain: cd04624

>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.82  E-value=5.2e-20  Score=162.97  Aligned_cols=107  Identities=32%  Similarity=0.544  Sum_probs=99.5

Q ss_pred             CCCEEEECCCCHHHHHHHHHHHCCCCEEEECCCCEEEEEEEEHHHHCC----CCCCCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf             287899465430345656676050416786688602788723545001----4344672440026786325730358999
Q gi|254780889|r  100 VNPVTISPYATLADALALMKKYSISGIPVVESDVGKLVGILTNRDVRF----ASNAQQAVGELMTRNLITVKKTVNLENA  175 (493)
Q Consensus       100 ~dPVti~pd~TI~ea~~lm~~~~is~iPVVD~~~gkLiGIVT~rDir~----~~~~~~~V~eiMt~~litv~~~~~l~eA  175 (493)
T Consensus         1 r~vvtv~~~~tl~ea~~~m~~~~~~~~~Vvd~~-~~lvGiiT~~Di~~~~~~~~~~~~~v~~~m~~~~~tv~~~~~l~~a   79 (112)
T cd04624           1 RPVVTVDPDTSIREAAKLMAEENVGSVVVVDPD-ERPIGIVTERDIVRAVAAGIDLDTPVSEIMTRDLVTVDPDEPVAEA   79 (112)
T ss_pred             CCCEEECCCCCHHHHHHHHHHCCCCEEEEECCC-CCEEEEEECCHHHHHHHCCCCCCCCEEEEECCCCEEECCCCCHHHH
T ss_conf             997897893959999999986299889999399-8299999820458898648743442045651671678799989999


Q ss_pred             HHHHHHCCCCEEEEECCCCCEEEEEEECCCHH
Q ss_conf             99998655330645747997868898021000
Q gi|254780889|r  176 KALLHQHRIEKLLVVDDDGCCIGLITVKDIER  207 (493)
Q Consensus       176 ~~iM~~~ki~~LPVVDe~g~LvGIIT~~DIlk  207 (493)
T Consensus        80 ~~~m~~~~~~~l~Vvd~~g~lvGiit~~Dilk  111 (112)
T cd04624          80 AKLMRKNNIRHHLVVDKGGELVGVISIRDLVR  111 (112)
T ss_pred             HHHHHHCCCEEEEEECCCCEEEEEEEHHHHCC
T ss_conf             99999749839989989999999998077256