HHsearch alignment for GI: 254780889 and conserved domain: cd04624
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.48 E-value=9e-07 Score=67.99 Aligned_cols=50 Identities=30% Similarity=0.498 Sum_probs=43.8
Q ss_pred CCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCEEEEEEECCCHHCCC
Q ss_conf 78632573035899999998655330645747997868898021000101
Q gi|254780889|r 161 RNLITVKKTVNLENAKALLHQHRIEKLLVVDDDGCCIGLITVKDIERSQL 210 (493)
Q Consensus 161 ~~litv~~~~~l~eA~~iM~~~ki~~LPVVDe~g~LvGIIT~~DIlk~~~ 210 (493)
T Consensus 1 r~vvtv~~~~tl~ea~~~m~~~~~~~~~Vvd~~~~lvGiiT~~Di~~~~~ 50 (112)
T cd04624 1 RPVVTVDPDTSIREAAKLMAEENVGSVVVVDPDERPIGIVTERDIVRAVA 50 (112)
T ss_pred CCCEEECCCCCHHHHHHHHHHCCCCEEEEECCCCCEEEEEECCHHHHHHH
T ss_conf 99789789395999999998629988999939982999998204588986