HHsearch alignment for GI: 254780889 and conserved domain: cd04627
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.75 E-value=5.8e-18 Score=148.30 Aligned_cols=105 Identities=27% Similarity=0.426 Sum_probs=92.4
Q ss_pred CEEEECCCCHHHHHHHHHHHCCCCEEEECCCCEEEEEEEEHHHHC-CC----CC---------CCCCCCCCCCCCCCCCC
Q ss_conf 789946543034565667605041678668860278872354500-14----34---------46724400267863257
Q gi|254780889|r 102 PVTISPYATLADALALMKKYSISGIPVVESDVGKLVGILTNRDVR-FA----SN---------AQQAVGELMTRNLITVK 167 (493)
Q Consensus 102 PVti~pd~TI~ea~~lm~~~~is~iPVVD~~~gkLiGIVT~rDir-~~----~~---------~~~~V~eiMt~~litv~ 167 (493)
T Consensus 3 fi~v~~~~sl~~a~~lm~~~~i~rlpVvd~~~g~lvGIiT~~dil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~viti~ 82 (123)
T cd04627 3 FIPVPSTASLFQAIEILGSGGIHRVAVTEEESGEVIGILSQRRLVEFLWENARSFPGLDPLYPIPLRDLTIGTSDVISIN 82 (123)
T ss_pred CEEECCCCCHHHHHHHHHHCCCCEEEEEECCCCCEEEEEEHHHHHHHHHHCCCCCCCHHHHHCCCHHHHHCCCCCCEEEC
T ss_conf 64848989299999999749977799995899949999997999999986376566144541120023323767717989
Q ss_pred CCCCHHHHHHHHHHCCCCEEEEECCCCCEEEEEEECCCH
Q ss_conf 303589999999865533064574799786889802100
Q gi|254780889|r 168 KTVNLENAKALLHQHRIEKLLVVDDDGCCIGLITVKDIE 206 (493)
Q Consensus 168 ~~~~l~eA~~iM~~~ki~~LPVVDe~g~LvGIIT~~DIl 206 (493)
T Consensus 83 ~d~~l~~A~~lM~~~~i~~lpVVD~~g~lvGiiS~~Dlr 121 (123)
T cd04627 83 GDQPLIDALHLMHNEGISSVAVVDNQGNLIGNISVTDVR 121 (123)
T ss_pred CCCCHHHHHHHHHHHCCCEEEEECCCCCEEEEEEHHHEE
T ss_conf 999599999999980988786985999699998925422