HHsearch alignment for GI: 254780889 and conserved domain: cd04637
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.83 E-value=3.8e-20 Score=163.98 Aligned_cols=106 Identities=31% Similarity=0.453 Sum_probs=96.6
Q ss_pred CCCEEEECCCCHHHHHHHHHHHCCCCEEEECCCCEEEEEEEEHHHHC-CC--------------CCCCCCCCCCCCCCCC
Q ss_conf 28789946543034565667605041678668860278872354500-14--------------3446724400267863
Q gi|254780889|r 100 VNPVTISPYATLADALALMKKYSISGIPVVESDVGKLVGILTNRDVR-FA--------------SNAQQAVGELMTRNLI 164 (493)
Q Consensus 100 ~dPVti~pd~TI~ea~~lm~~~~is~iPVVD~~~gkLiGIVT~rDir-~~--------------~~~~~~V~eiMt~~li 164 (493)
T Consensus 1 T~viTv~p~~tl~~a~~~m~~~~i~~lpVvd~--~~lvGivT~~Di~~~~~~~~~~~~~~~~~~~~~~~~v~~iM~~~~i 78 (122)
T cd04637 1 TRVVTVEMDDRLEEVREIFEKHKFHHLLVVED--NELVGVISDRDYLKAISPFLGTAGETEKDLATLNRRAHQIMTRDPI 78 (122)
T ss_pred CCCEEECCCCCHHHHHHHHHHCCCCEEEEEEC--CEEEEEEEHHHHHHHHHHCCCCCHHHHCCCHHHCCCHHHHCCCCCE
T ss_conf 97499889696999999998749988999989--9999998889999875002453102211212306899994638983
Q ss_pred CCCCCCCHHHHHHHHHHCCCCEEEEECCCCCEEEEEEECCCHH
Q ss_conf 2573035899999998655330645747997868898021000
Q gi|254780889|r 165 TVKKTVNLENAKALLHQHRIEKLLVVDDDGCCIGLITVKDIER 207 (493)
Q Consensus 165 tv~~~~~l~eA~~iM~~~ki~~LPVVDe~g~LvGIIT~~DIlk 207 (493)
T Consensus 79 tv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~lvGiIT~~Diik 121 (122)
T cd04637 79 TVSPDTPVDEASKLLLENSISCLPVVDENGQLIGIITWKDLLK 121 (122)
T ss_pred EECCCCCHHHHHHHHHHCCCEEEEEECCCCEEEEEEEHHHHHC
T ss_conf 9999984999999999749308999968998999999688327