HHsearch alignment for GI: 254780889 and conserved domain: cd04638
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.85 E-value=7.6e-21 Score=168.94 Aligned_cols=106 Identities=38% Similarity=0.592 Sum_probs=98.1
Q ss_pred CCCEEEECCCCHHHHHHHHHHHCCCCEEEECCCCEEEEEEEEHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 28789946543034565667605041678668860278872354500143446724400267863257303589999999
Q gi|254780889|r 100 VNPVTISPYATLADALALMKKYSISGIPVVESDVGKLVGILTNRDVRFASNAQQAVGELMTRNLITVKKTVNLENAKALL 179 (493)
Q Consensus 100 ~dPVti~pd~TI~ea~~lm~~~~is~iPVVD~~~gkLiGIVT~rDir~~~~~~~~V~eiMt~~litv~~~~~l~eA~~iM 179 (493)
T Consensus 1 kdvvtv~~~~tv~ea~~lm~~~~i~~lpVvd~~-~~lvGivT~~Dl~~-~~~~~~v~~iMt~~~~tv~~~~~~~~a~~~m 78 (106)
T cd04638 1 ENVVYVTLPGTRDDVLELLKEYKVSGVPVVKKS-GELVGIITRKDLLR-NPEEEQLALLMTRDPPTVSPDDDVKEAAKLM 78 (106)
T ss_pred CCCEEECCCCCHHHHHHHHHHHCCCEEEEECCC-CEEEEEEEHHHHHH-CCCCCHHHHHHCCCCEECCCCCCHHHHHHHH
T ss_conf 998999994969999999997699989999389-99999989789644-8750244675358973679949199999999
Q ss_pred HHCCCCEEEEECCCCCEEEEEEECCCHHC
Q ss_conf 86553306457479978688980210001
Q gi|254780889|r 180 HQHRIEKLLVVDDDGCCIGLITVKDIERS 208 (493)
Q Consensus 180 ~~~ki~~LPVVDe~g~LvGIIT~~DIlk~ 208 (493)
T Consensus 79 ~~~~i~~lpVvd-~~~lvGiIt~~DilkA 106 (106)
T cd04638 79 VENNIRRVPVVD-DGKLVGIVTVADIVRA 106 (106)
T ss_pred HHCCCCEEEEEE-CCEEEEEEEHHHHHCC
T ss_conf 876975999999-9999999997995359