HHsearch alignment for GI: 254780889 and conserved domain: cd04640
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.51 E-value=3.3e-07 Score=71.11 Aligned_cols=48 Identities=31% Similarity=0.486 Sum_probs=45.1
Q ss_pred CCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCEEEEEEECCCHHCC
Q ss_conf 863257303589999999865533064574799786889802100010
Q gi|254780889|r 162 NLITVKKTVNLENAKALLHQHRIEKLLVVDDDGCCIGLITVKDIERSQ 209 (493)
Q Consensus 162 ~litv~~~~~l~eA~~iM~~~ki~~LPVVDe~g~LvGIIT~~DIlk~~ 209 (493)
T Consensus 2 ~Pvtv~~dtti~eA~~~M~~~~v~~l~VvD~~~~lvGIiT~~Dl~~~~ 49 (126)
T cd04640 2 KPIVIPADTSIDEALELMIKHGVRLLLVVDSDDNFIGVITAVDLLGEE 49 (126)
T ss_pred CCEEECCCCCHHHHHHHHHHHCCCEEEEECCCCCEEEEEECCCCCCCH
T ss_conf 896968999599999999983976798987999799999763001215