HHsearch alignment for GI: 254780889 and conserved domain: cd04642
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.81 E-value=2.2e-19 Score=158.49 Aligned_cols=108 Identities=32% Similarity=0.499 Sum_probs=95.6
Q ss_pred CCCEEEECCCCHHHHHHHHHHHCCCCEEEECCCCEEEEEEEEHHHHCCC------------------CCCCCCCCCCCCC
Q ss_conf 2878994654303456566760504167866886027887235450014------------------3446724400267
Q gi|254780889|r 100 VNPVTISPYATLADALALMKKYSISGIPVVESDVGKLVGILTNRDVRFA------------------SNAQQAVGELMTR 161 (493)
Q Consensus 100 ~dPVti~pd~TI~ea~~lm~~~~is~iPVVD~~~gkLiGIVT~rDir~~------------------~~~~~~V~eiMt~ 161 (493)
T Consensus 1 s~Vitv~~~~~l~eA~~lm~~~~i~~lPVvd~~-g~lvGiis~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (126)
T cd04642 1 SKVVSIDSDERVLDAFKLMRKNNISGLPVVDEK-GKLIGNISASDLKGLLLSPDDLLLYRTITFKELSEKFTDSDGVKSR 79 (126)
T ss_pred CCEEEECCCCCHHHHHHHHHHCCCCEEEEEECC-CEEEEEEEHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCEEEECCCC
T ss_conf 957999995999999999998098789999289-9099999989976555144303444455554203344234202447
Q ss_pred CCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCEEEEEEECCCHHC
Q ss_conf 86325730358999999986553306457479978688980210001
Q gi|254780889|r 162 NLITVKKTVNLENAKALLHQHRIEKLLVVDDDGCCIGLITVKDIERS 208 (493)
Q Consensus 162 ~litv~~~~~l~eA~~iM~~~ki~~LPVVDe~g~LvGIIT~~DIlk~ 208 (493)
T Consensus 80 ~~itv~~~~~l~~~~~~m~~~~i~~lpVVD~~~~lvGIIs~~Dil~~ 126 (126)
T cd04642 80 PLITCTPSSTLKEVITKLVANKVHRVWVVDEEGKPIGVITLTDIISI 126 (126)
T ss_pred CCEEECCCCCHHHHHHHHHHCCCCEEEEECCCCEEEEEEEHHHHHCC
T ss_conf 99899996939999999998697499999899959999992894219