HHsearch alignment for GI: 254780889 and conserved domain: cd04643

>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.81  E-value=8.8e-20  Score=161.31  Aligned_cols=106  Identities=29%  Similarity=0.452  Sum_probs=95.3

Q ss_pred             CCCEEEECCCCHHHHHHHHHHHCCCCEEEECCCCEEEEEEEEHHHHCC----------CCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             287899465430345656676050416786688602788723545001----------4344672440026786325730
Q gi|254780889|r  100 VNPVTISPYATLADALALMKKYSISGIPVVESDVGKLVGILTNRDVRF----------ASNAQQAVGELMTRNLITVKKT  169 (493)
Q Consensus       100 ~dPVti~pd~TI~ea~~lm~~~~is~iPVVD~~~gkLiGIVT~rDir~----------~~~~~~~V~eiMt~~litv~~~  169 (493)
T Consensus         1 k~Vvtv~~~~tl~~A~~~m~~~~i~~lPVvd~~-gklvGiit~~Di~~~~~~~~~~~~~~~~~~~V~~iM~~~~~tv~~~   79 (116)
T cd04643           1 EEVAYVQDTNTLRHALLVLTKHGYSAIPVLDKE-GKYVGTISLTDILWKLKGLENLDLERLVDLKVIDVMNTDVPVIIDD   79 (116)
T ss_pred             CCEEEECCCCCHHHHHHHHHHCCCCEEEEECCC-CEEEEEEEHHHHHHHHHCCCCCCHHHHCCCCHHHHHCCCCEEEECC
T ss_conf             976999994929999999997499879898699-9499998899999987436532202311668779515698899079


Q ss_pred             CCHHHHHHHHHHCCCCEEEEECCCCCEEEEEEECCCHHC
Q ss_conf             358999999986553306457479978688980210001
Q gi|254780889|r  170 VNLENAKALLHQHRIEKLLVVDDDGCCIGLITVKDIERS  208 (493)
Q Consensus       170 ~~l~eA~~iM~~~ki~~LPVVDe~g~LvGIIT~~DIlk~  208 (493)
T Consensus        80 ~~i~~~~~~m~~~~~--lpVVD~~~~lvGIITr~DilkA  116 (116)
T cd04643          80 ADIEEILHLLIDQPF--LPVVDDDGIFIGIITRREILKA  116 (116)
T ss_pred             CCHHHHHHHHHHCCE--EEEEECCCEEEEEEEHHHHHCC
T ss_conf             999999999987898--9999459999999992795579