HHsearch alignment for GI: 254780889 and conserved domain: cd04802

>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.79  E-value=5.3e-19  Score=155.71  Aligned_cols=105  Identities=35%  Similarity=0.529  Sum_probs=95.8

Q ss_pred             CCCEEEECCCCHHHHHHHHHHHCCCCEEEECCCCEEEEEEEEHHHHC------CCCCCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf             28789946543034565667605041678668860278872354500------143446724400267863257303589
Q gi|254780889|r  100 VNPVTISPYATLADALALMKKYSISGIPVVESDVGKLVGILTNRDVR------FASNAQQAVGELMTRNLITVKKTVNLE  173 (493)
Q Consensus       100 ~dPVti~pd~TI~ea~~lm~~~~is~iPVVD~~~gkLiGIVT~rDir------~~~~~~~~V~eiMt~~litv~~~~~l~  173 (493)
T Consensus         1 r~vvti~~~~tl~~a~~~m~~~~i~~l~V~d~--~~~vGivt~~Di~~~~~~~~~~~~~~~v~~iM~~~~~tv~~~~~l~   78 (112)
T cd04802           1 KNVITVDPDTTVYEAANIMTENNIGRLIVVDN--EKPVGIITERDLVKKVVSRNLKPREVPVGEVMSTPLITIDPNASLN   78 (112)
T ss_pred             CCCEEECCCCCHHHHHHHHHHHCCCEEEEEEC--CEEEEEEEECHHHHHHHHCCCCCCCCCHHHHHCCCCEEECCCCHHH
T ss_conf             99789689198999999999749987999989--9999999821878888754798123899997234855994798699


Q ss_pred             HHHHHHHHCCCCEEEEECCCCCEEEEEEECCCHH
Q ss_conf             9999998655330645747997868898021000
Q gi|254780889|r  174 NAKALLHQHRIEKLLVVDDDGCCIGLITVKDIER  207 (493)
Q Consensus       174 eA~~iM~~~ki~~LPVVDe~g~LvGIIT~~DIlk  207 (493)
T Consensus        79 ~a~~~m~~~~~~~lpVvd-~~~lvGiIt~~Dil~  111 (112)
T cd04802          79 EAAKLMAKHGIKRLPVVD-DDELVGIVTTTDIVM  111 (112)
T ss_pred             HHHHHHHHHCCCEEEEEE-CCEEEEEEECHHHCC
T ss_conf             999987871985899998-999999998067105