HHsearch alignment for GI: 254780889 and conserved domain: cd04802
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.79 E-value=5.3e-19 Score=155.71 Aligned_cols=105 Identities=35% Similarity=0.529 Sum_probs=95.8
Q ss_pred CCCEEEECCCCHHHHHHHHHHHCCCCEEEECCCCEEEEEEEEHHHHC------CCCCCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 28789946543034565667605041678668860278872354500------143446724400267863257303589
Q gi|254780889|r 100 VNPVTISPYATLADALALMKKYSISGIPVVESDVGKLVGILTNRDVR------FASNAQQAVGELMTRNLITVKKTVNLE 173 (493)
Q Consensus 100 ~dPVti~pd~TI~ea~~lm~~~~is~iPVVD~~~gkLiGIVT~rDir------~~~~~~~~V~eiMt~~litv~~~~~l~ 173 (493)
T Consensus 1 r~vvti~~~~tl~~a~~~m~~~~i~~l~V~d~--~~~vGivt~~Di~~~~~~~~~~~~~~~v~~iM~~~~~tv~~~~~l~ 78 (112)
T cd04802 1 KNVITVDPDTTVYEAANIMTENNIGRLIVVDN--EKPVGIITERDLVKKVVSRNLKPREVPVGEVMSTPLITIDPNASLN 78 (112)
T ss_pred CCCEEECCCCCHHHHHHHHHHHCCCEEEEEEC--CEEEEEEEECHHHHHHHHCCCCCCCCCHHHHHCCCCEEECCCCHHH
T ss_conf 99789689198999999999749987999989--9999999821878888754798123899997234855994798699
Q ss_pred HHHHHHHHCCCCEEEEECCCCCEEEEEEECCCHH
Q ss_conf 9999998655330645747997868898021000
Q gi|254780889|r 174 NAKALLHQHRIEKLLVVDDDGCCIGLITVKDIER 207 (493)
Q Consensus 174 eA~~iM~~~ki~~LPVVDe~g~LvGIIT~~DIlk 207 (493)
T Consensus 79 ~a~~~m~~~~~~~lpVvd-~~~lvGiIt~~Dil~ 111 (112)
T cd04802 79 EAAKLMAKHGIKRLPVVD-DDELVGIVTTTDIVM 111 (112)
T ss_pred HHHHHHHHHCCCEEEEEE-CCEEEEEEECHHHCC
T ss_conf 999987871985899998-999999998067105