HHsearch alignment for GI: 254780889 and conserved domain: cd04803
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.81 E-value=1.8e-19 Score=159.16 Aligned_cols=106 Identities=40% Similarity=0.571 Sum_probs=96.2
Q ss_pred CEEEECCCCHHHHHHHHHHHCCCCEEEECCCCEEEEEEEEHHHHC-C-------------CCCCCCCCCCCCCCCCCCCC
Q ss_conf 789946543034565667605041678668860278872354500-1-------------43446724400267863257
Q gi|254780889|r 102 PVTISPYATLADALALMKKYSISGIPVVESDVGKLVGILTNRDVR-F-------------ASNAQQAVGELMTRNLITVK 167 (493)
Q Consensus 102 PVti~pd~TI~ea~~lm~~~~is~iPVVD~~~gkLiGIVT~rDir-~-------------~~~~~~~V~eiMt~~litv~ 167 (493)
T Consensus 3 vvtv~~~~tl~~a~~~m~~~~i~~lpVvd~~-~~lvGiit~~Dil~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~tv~ 81 (122)
T cd04803 3 VVTLSEDDSLADAEELMREHRIRHLPVVNED-GKLVGLLTQRDLLRAALSSLSDNGEESLTKERDVPVAEVMKTDVLTVT 81 (122)
T ss_pred CEEECCCCCHHHHHHHHHHCCCCEEEEECCC-CCEEEEEEHHHHHHHHHHCCCCCCHHHCCCCCCCCHHHHCCCCCEEEC
T ss_conf 1999896999999999997499789999089-868889659999999984376420121025358899996689986998
Q ss_pred CCCCHHHHHHHHHHCCCCEEEEECCCCCEEEEEEECCCHHC
Q ss_conf 30358999999986553306457479978688980210001
Q gi|254780889|r 168 KTVNLENAKALLHQHRIEKLLVVDDDGCCIGLITVKDIERS 208 (493)
Q Consensus 168 ~~~~l~eA~~iM~~~ki~~LPVVDe~g~LvGIIT~~DIlk~ 208 (493)
T Consensus 82 ~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGiiT~~Dilkl 122 (122)
T cd04803 82 PDTPLREAAEIMVENKIGCLPVVDDKGTLVGIITRSDFLRL 122 (122)
T ss_pred CCCCHHHHHHHHHHCCCCEEEEEECCCEEEEEEEHHHEEEC
T ss_conf 99989999999985685099999479989999995155649