HHsearch alignment for GI: 254780889 and conserved domain: pfam01645
>pfam01645 Glu_synthase Conserved region in glutamate synthase. This family represents a region of the glutamate synthase protein. This region is expressed as a separate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.
Probab=98.59 E-value=1.2e-07 Score=74.34 Aligned_cols=207 Identities=22% Similarity=0.256 Sum_probs=118.0
Q ss_pred CCCCCCCEEEEEEEECCCHHHHHHHHHHHCCCCEEEEECCCC-H-HHHHHHHHHHHHHHCCCC----CEECCCCCCHHHH
Q ss_conf 326568765556651370156789998731366699824841-1-388999999999857987----2451464699999
Q gi|254780889|r 215 TKDSKGRLRVAAAVSVAKDIADRVGPLFDVNVDLVVVDTAHG-H-SQKVLDAVVQIKKNFPSL----LVMAGNIATAEGA 288 (493)
Q Consensus 215 ~~D~~grL~VgAAIg~~~d~~eRa~~LveaGvDviviD~ahG-h-~~~~~~~i~~~k~~~~~~----~ii~GNv~t~~~~ 288 (493)
T Consensus 145 AKPG~GG~Lpg~KVt--~-e-IA~~R~~~~G~d~iSP~~h~di~s~edL~~~I~~Lr~~~~~~PVgvKl~~~~~~~~i-a 219 (367)
T pfam01645 145 AKPGEGGHLPGEKVS--P-E-IARIRGSPPGVGLISPPPHHDIYSIEDLAQLIYDLKEINPKAPISVKLVSGHGVGTI-A 219 (367)
T ss_pred CCCCCCCCCCHHHCC--H-H-HHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHH-H
T ss_conf 788978837735448--9-9-996808999987678633478899999999999998417899459998147768999-9
Q ss_pred HHHHHCCCCEEEEEE-CCCCCCCCC-HHCCCCCCCCHHHHHHHHHHHCCC----CEEEEECCCCCHHHHEEEEEECCCEE
Q ss_conf 999854875899610-278766531-000157431003788999862269----81997265437776213367148789
Q gi|254780889|r 289 LALIDAGADIIKVGI-GPGSICTTR-VVTGVGCPQLSAIMSVVEVAERAG----VAIVADGGIRFSGDIAKAIAAGSACV 362 (493)
Q Consensus 289 ~~l~~~Gad~ikvGi-g~Gs~CtTr-~~~g~g~pq~~av~~~~~~~~~~~----~~iiadGGi~~~gdi~kAla~GA~~V 362 (493)
T Consensus 220 ~~~aka~~D~I~IdG~eGGTGAaP~~~~d~~GlP~~~~L~~~~~~L~~~glR~~V~liasGgl~t~~Dv~ka~aLGAD~v 299 (367)
T pfam01645 220 AGVAKAGADIILIDGHDGGTGASPKTSIKHAGLPWELALAEVHQTLVENGLRDRVSLIADGGLRTGADVAKAAALGADAV 299 (367)
T ss_pred HHHHCCCCCEEEECCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHCCCHH
T ss_conf 98753678889971789867755488997442469999999999998706757649997699788899999998565354
Q ss_pred EECC--HHH-CCCCCCCCEEEECCEEEEEEECCCCHHHHHHCCHHHHCCCCCCCCCCEECCCCEEEEECCCCHHHHHHHH
Q ss_conf 9323--010-1216776448736805888733200688752212221012333433100454026621057589989999
Q gi|254780889|r 363 MIGS--LLA-GTDESPGDIFLYQGRSFKSYRGMGSVAAMERGSSARYSQDGVTDVLKLVPEGIEGRVPYKGPIASVLHQM 439 (493)
Q Consensus 363 M~G~--~~a-gt~Espg~~~~~~g~~~K~yrGm~S~~A~~~~~~~ry~~~~~~~~~k~v~eGv~~~v~~~G~~~~~~~~~ 439 (493)
T Consensus 300 ~~gt~~m~AlGCi~~~---~Ch~~---~CP~GIaTqdp~l---~~~l~----------~~~~~~-------rv~nf~~~~ 353 (367)
T pfam01645 300 YIGTAALIALGCIMCR---VCHTN---TCPVGVATQDPEL---RKRLD----------FEGAPE-------RVVNYFRFL 353 (367)
T ss_pred HHHHHHHHHHHCHHHH---HHCCC---CCCCCCCCCCHHH---HHCCC----------CCCHHH-------HHHHHHHHH
T ss_conf 2347999986489866---52699---8998422579888---73269----------664799-------999999999
Q ss_pred HHHHHHHHHHCCC
Q ss_conf 9999985551575
Q gi|254780889|r 440 SGGLKSSMGYVGA 452 (493)
Q Consensus 440 ~~glrs~~~y~G~ 452 (493)
T Consensus 354 ~~e~~~i~~a~G~ 366 (367)
T pfam01645 354 AEEVRELLAALGF 366 (367)
T ss_pred HHHHHHHHHHHCC
T ss_conf 9999999998588