HHsearch alignment for GI: 254780889 and conserved domain: pfam01645

>pfam01645 Glu_synthase Conserved region in glutamate synthase. This family represents a region of the glutamate synthase protein. This region is expressed as a separate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.
Probab=98.59  E-value=1.2e-07  Score=74.34  Aligned_cols=207  Identities=22%  Similarity=0.256  Sum_probs=118.0

Q ss_pred             CCCCCCCEEEEEEEECCCHHHHHHHHHHHCCCCEEEEECCCC-H-HHHHHHHHHHHHHHCCCC----CEECCCCCCHHHH
Q ss_conf             326568765556651370156789998731366699824841-1-388999999999857987----2451464699999
Q gi|254780889|r  215 TKDSKGRLRVAAAVSVAKDIADRVGPLFDVNVDLVVVDTAHG-H-SQKVLDAVVQIKKNFPSL----LVMAGNIATAEGA  288 (493)
Q Consensus       215 ~~D~~grL~VgAAIg~~~d~~eRa~~LveaGvDviviD~ahG-h-~~~~~~~i~~~k~~~~~~----~ii~GNv~t~~~~  288 (493)
T Consensus       145 AKPG~GG~Lpg~KVt--~-e-IA~~R~~~~G~d~iSP~~h~di~s~edL~~~I~~Lr~~~~~~PVgvKl~~~~~~~~i-a  219 (367)
T pfam01645       145 AKPGEGGHLPGEKVS--P-E-IARIRGSPPGVGLISPPPHHDIYSIEDLAQLIYDLKEINPKAPISVKLVSGHGVGTI-A  219 (367)
T ss_pred             CCCCCCCCCCHHHCC--H-H-HHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHH-H
T ss_conf             788978837735448--9-9-996808999987678633478899999999999998417899459998147768999-9


Q ss_pred             HHHHHCCCCEEEEEE-CCCCCCCCC-HHCCCCCCCCHHHHHHHHHHHCCC----CEEEEECCCCCHHHHEEEEEECCCEE
Q ss_conf             999854875899610-278766531-000157431003788999862269----81997265437776213367148789
Q gi|254780889|r  289 LALIDAGADIIKVGI-GPGSICTTR-VVTGVGCPQLSAIMSVVEVAERAG----VAIVADGGIRFSGDIAKAIAAGSACV  362 (493)
Q Consensus       289 ~~l~~~Gad~ikvGi-g~Gs~CtTr-~~~g~g~pq~~av~~~~~~~~~~~----~~iiadGGi~~~gdi~kAla~GA~~V  362 (493)
T Consensus       220 ~~~aka~~D~I~IdG~eGGTGAaP~~~~d~~GlP~~~~L~~~~~~L~~~glR~~V~liasGgl~t~~Dv~ka~aLGAD~v  299 (367)
T pfam01645       220 AGVAKAGADIILIDGHDGGTGASPKTSIKHAGLPWELALAEVHQTLVENGLRDRVSLIADGGLRTGADVAKAAALGADAV  299 (367)
T ss_pred             HHHHCCCCCEEEECCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHCCCHH
T ss_conf             98753678889971789867755488997442469999999999998706757649997699788899999998565354


Q ss_pred             EECC--HHH-CCCCCCCCEEEECCEEEEEEECCCCHHHHHHCCHHHHCCCCCCCCCCEECCCCEEEEECCCCHHHHHHHH
Q ss_conf             9323--010-1216776448736805888733200688752212221012333433100454026621057589989999
Q gi|254780889|r  363 MIGS--LLA-GTDESPGDIFLYQGRSFKSYRGMGSVAAMERGSSARYSQDGVTDVLKLVPEGIEGRVPYKGPIASVLHQM  439 (493)
Q Consensus       363 M~G~--~~a-gt~Espg~~~~~~g~~~K~yrGm~S~~A~~~~~~~ry~~~~~~~~~k~v~eGv~~~v~~~G~~~~~~~~~  439 (493)
T Consensus       300 ~~gt~~m~AlGCi~~~---~Ch~~---~CP~GIaTqdp~l---~~~l~----------~~~~~~-------rv~nf~~~~  353 (367)
T pfam01645       300 YIGTAALIALGCIMCR---VCHTN---TCPVGVATQDPEL---RKRLD----------FEGAPE-------RVVNYFRFL  353 (367)
T ss_pred             HHHHHHHHHHHCHHHH---HHCCC---CCCCCCCCCCHHH---HHCCC----------CCCHHH-------HHHHHHHHH
T ss_conf             2347999986489866---52699---8998422579888---73269----------664799-------999999999


Q ss_pred             HHHHHHHHHHCCC
Q ss_conf             9999985551575
Q gi|254780889|r  440 SGGLKSSMGYVGA  452 (493)
Q Consensus       440 ~~glrs~~~y~G~  452 (493)
T Consensus       354 ~~e~~~i~~a~G~  366 (367)
T pfam01645       354 AEEVRELLAALGF  366 (367)
T ss_pred             HHHHHHHHHHHCC
T ss_conf             9999999998588