HHsearch alignment for GI: 254780889 and conserved domain: pfam03060
>pfam03060 NPD 2-nitropropane dioxygenase. Members of this family catalyse the denitrification of a number of nitroalkanes using either FAD or FMN as a cofactor.
Probab=99.81 E-value=2.1e-18 Score=151.51 Aligned_cols=233 Identities=24% Similarity=0.370 Sum_probs=157.1
Q ss_pred EEEECCCCEECCCEEEECCCCCCCHHHHHHHHHCCCEEEECC-CCCHHHHHHHHHHHHHHCCCEECCCEEEECCCCHHHH
Q ss_conf 343038816003178337852368889999997798799978-9898999999998742238815287899465430345
Q gi|254780889|r 36 STRIAKDFTLNLPIMSAAMDQVTDSRLAIAMAQAGGLGVIHR-NFSPSEQVAQVHQVKKFESGMVVNPVTISPYATLADA 114 (493)
Q Consensus 36 ~t~lt~~i~l~iPivSs~MDTVTe~~MAiamA~~GGiGvIHr-n~sie~qa~~V~kVKr~e~gmI~dPVti~pd~TI~ea 114 (493)
T Consensus 1 kt~~t~~lgi~~PIiqapM~~vs~~~LaaAVs~AGglG~i~~~~~~~e~l~~~i~~~~~~t----~~pfgvn-------- 68 (330)
T pfam03060 1 RTRFTDLLKIKYPIVQPPMGGISTPELAAAVSEAGGLGVLGAGYLTPDRLEKEIRKVKELT----DKPFGVN-------- 68 (330)
T ss_pred CCHHHHHHCCCCCEECCCCCCCCCHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHH----CCCCCCC--------
T ss_conf 9666687589828798887767869999999967988861277699999999999999864----8876313--------
Q ss_pred HHHHHHHCCCCEEEECCCCEEEEEEEEHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 65667605041678668860278872354500143446724400267863257303589999999865533064574799
Q gi|254780889|r 115 LALMKKYSISGIPVVESDVGKLVGILTNRDVRFASNAQQAVGELMTRNLITVKKTVNLENAKALLHQHRIEKLLVVDDDG 194 (493)
Q Consensus 115 ~~lm~~~~is~iPVVD~~~gkLiGIVT~rDir~~~~~~~~V~eiMt~~litv~~~~~l~eA~~iM~~~ki~~LPVVDe~g 194 (493)
T Consensus 69 ------------------------l~~~~~------~~~--------~~~~~~~~~~~~~~~~~~~~~------------ 98 (330)
T pfam03060 69 ------------------------LFLPQP------AEG--------DDFALDPEEHLNAALKLALEY------------ 98 (330)
T ss_pred ------------------------CCCCCC------CCC--------HHHHHHHHHHHHHHHHHHHHC------------
T ss_conf ------------------------337885------431--------456666775013678888751------------
Q ss_pred CEEEEEEECCCHHCCCCCCCCCCCCCCEEEEEEEECCCHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHCCC
Q ss_conf 78688980210001017422326568765556651370156789998731366699824841138899999999985798
Q gi|254780889|r 195 CCIGLITVKDIERSQLNPNATKDSKGRLRVAAAVSVAKDIADRVGPLFDVNVDLVVVDTAHGHSQKVLDAVVQIKKNFPS 274 (493)
Q Consensus 195 ~LvGIIT~~DIlk~~~~p~A~~D~~grL~VgAAIg~~~d~~eRa~~LveaGvDviviD~ahGh~~~~~~~i~~~k~~~~~ 274 (493)
T Consensus 99 ----------------------------------~-~~~~~~~~~~~~~~~~~~v~~~--~G~p~--~~~v~~~~~~--G 137 (330)
T pfam03060 99 ----------------------------------G-VPDYGDDDDSLKDAKPKVVSFG--FGLPP--EDVIERLKES--G 137 (330)
T ss_pred ----------------------------------C-CCCHHHHHHHHHHCCCCEEEEC--CCCCH--HHHHHHHHHC--C
T ss_conf ----------------------------------6-9837999999997499999989--98982--7999999987--9
Q ss_pred CCEECCCCCCHHHHHHHHHCCCCEEEE-EECCCCCCCCCHHCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCHHHHEE
Q ss_conf 724514646999999998548758996-1027876653100015743100378899986226981997265437776213
Q gi|254780889|r 275 LLVMAGNIATAEGALALIDAGADIIKV-GIGPGSICTTRVVTGVGCPQLSAIMSVVEVAERAGVAIVADGGIRFSGDIAK 353 (493)
Q Consensus 275 ~~ii~GNv~t~~~~~~l~~~Gad~ikv-Gig~Gs~CtTr~~~g~g~pq~~av~~~~~~~~~~~~~iiadGGi~~~gdi~k 353 (493)
T Consensus 138 ~~-v~~~v~s~~~A~~a~~~G~D~iV~qG~eAGGH~G~~~----~~~~~~L~~~v~~~---~~iPvIaAGGI~dg~~iaa 209 (330)
T pfam03060 138 TK-VIPTVSSAKEARKAEAAGADAVVAQGPEAGGHRGTEV----GTGTFLLVPTVVDA---VDIPVIAAGGIADGRGIAA 209 (330)
T ss_pred CE-EEEECCCHHHHHHHHHCCCCEEEEECCCCCCCCCCCC----CCCHHHHHHHHHHH---CCCCEEEECCCCCHHHHHH
T ss_conf 98-9998189999999998199989996676677788877----73077778999987---1697785266289999999
Q ss_pred EEEECCCEEEECCHHHCCCCCCCCEE
Q ss_conf 36714878993230101216776448
Q gi|254780889|r 354 AIAAGSACVMIGSLLAGTDESPGDIF 379 (493)
Q Consensus 354 Ala~GA~~VM~G~~~agt~Espg~~~ 379 (493)
T Consensus 210 alalGA~gV~mGTrFlat~Es~~~~~ 235 (330)
T pfam03060 210 ALALGAEGVQIGTRFLATKEATAPPV 235 (330)
T ss_pred HHHCCCCEEEECCEEEECCCCCCCHH
T ss_conf 99679989997130011577789999