HHsearch alignment for GI: 254780889 and conserved domain: pfam03060

>pfam03060 NPD 2-nitropropane dioxygenase. Members of this family catalyse the denitrification of a number of nitroalkanes using either FAD or FMN as a cofactor.
Probab=99.81  E-value=2.1e-18  Score=151.51  Aligned_cols=233  Identities=24%  Similarity=0.370  Sum_probs=157.1

Q ss_pred             EEEECCCCEECCCEEEECCCCCCCHHHHHHHHHCCCEEEECC-CCCHHHHHHHHHHHHHHCCCEECCCEEEECCCCHHHH
Q ss_conf             343038816003178337852368889999997798799978-9898999999998742238815287899465430345
Q gi|254780889|r   36 STRIAKDFTLNLPIMSAAMDQVTDSRLAIAMAQAGGLGVIHR-NFSPSEQVAQVHQVKKFESGMVVNPVTISPYATLADA  114 (493)
Q Consensus        36 ~t~lt~~i~l~iPivSs~MDTVTe~~MAiamA~~GGiGvIHr-n~sie~qa~~V~kVKr~e~gmI~dPVti~pd~TI~ea  114 (493)
T Consensus         1 kt~~t~~lgi~~PIiqapM~~vs~~~LaaAVs~AGglG~i~~~~~~~e~l~~~i~~~~~~t----~~pfgvn--------   68 (330)
T pfam03060         1 RTRFTDLLKIKYPIVQPPMGGISTPELAAAVSEAGGLGVLGAGYLTPDRLEKEIRKVKELT----DKPFGVN--------   68 (330)
T ss_pred             CCHHHHHHCCCCCEECCCCCCCCCHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHH----CCCCCCC--------
T ss_conf             9666687589828798887767869999999967988861277699999999999999864----8876313--------


Q ss_pred             HHHHHHHCCCCEEEECCCCEEEEEEEEHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf             65667605041678668860278872354500143446724400267863257303589999999865533064574799
Q gi|254780889|r  115 LALMKKYSISGIPVVESDVGKLVGILTNRDVRFASNAQQAVGELMTRNLITVKKTVNLENAKALLHQHRIEKLLVVDDDG  194 (493)
Q Consensus       115 ~~lm~~~~is~iPVVD~~~gkLiGIVT~rDir~~~~~~~~V~eiMt~~litv~~~~~l~eA~~iM~~~ki~~LPVVDe~g  194 (493)
T Consensus        69 ------------------------l~~~~~------~~~--------~~~~~~~~~~~~~~~~~~~~~------------   98 (330)
T pfam03060        69 ------------------------LFLPQP------AEG--------DDFALDPEEHLNAALKLALEY------------   98 (330)
T ss_pred             ------------------------CCCCCC------CCC--------HHHHHHHHHHHHHHHHHHHHC------------
T ss_conf             ------------------------337885------431--------456666775013678888751------------


Q ss_pred             CEEEEEEECCCHHCCCCCCCCCCCCCCEEEEEEEECCCHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHCCC
Q ss_conf             78688980210001017422326568765556651370156789998731366699824841138899999999985798
Q gi|254780889|r  195 CCIGLITVKDIERSQLNPNATKDSKGRLRVAAAVSVAKDIADRVGPLFDVNVDLVVVDTAHGHSQKVLDAVVQIKKNFPS  274 (493)
Q Consensus       195 ~LvGIIT~~DIlk~~~~p~A~~D~~grL~VgAAIg~~~d~~eRa~~LveaGvDviviD~ahGh~~~~~~~i~~~k~~~~~  274 (493)
T Consensus        99 ----------------------------------~-~~~~~~~~~~~~~~~~~~v~~~--~G~p~--~~~v~~~~~~--G  137 (330)
T pfam03060        99 ----------------------------------G-VPDYGDDDDSLKDAKPKVVSFG--FGLPP--EDVIERLKES--G  137 (330)
T ss_pred             ----------------------------------C-CCCHHHHHHHHHHCCCCEEEEC--CCCCH--HHHHHHHHHC--C
T ss_conf             ----------------------------------6-9837999999997499999989--98982--7999999987--9


Q ss_pred             CCEECCCCCCHHHHHHHHHCCCCEEEE-EECCCCCCCCCHHCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCHHHHEE
Q ss_conf             724514646999999998548758996-1027876653100015743100378899986226981997265437776213
Q gi|254780889|r  275 LLVMAGNIATAEGALALIDAGADIIKV-GIGPGSICTTRVVTGVGCPQLSAIMSVVEVAERAGVAIVADGGIRFSGDIAK  353 (493)
Q Consensus       275 ~~ii~GNv~t~~~~~~l~~~Gad~ikv-Gig~Gs~CtTr~~~g~g~pq~~av~~~~~~~~~~~~~iiadGGi~~~gdi~k  353 (493)
T Consensus       138 ~~-v~~~v~s~~~A~~a~~~G~D~iV~qG~eAGGH~G~~~----~~~~~~L~~~v~~~---~~iPvIaAGGI~dg~~iaa  209 (330)
T pfam03060       138 TK-VIPTVSSAKEARKAEAAGADAVVAQGPEAGGHRGTEV----GTGTFLLVPTVVDA---VDIPVIAAGGIADGRGIAA  209 (330)
T ss_pred             CE-EEEECCCHHHHHHHHHCCCCEEEEECCCCCCCCCCCC----CCCHHHHHHHHHHH---CCCCEEEECCCCCHHHHHH
T ss_conf             98-9998189999999998199989996676677788877----73077778999987---1697785266289999999


Q ss_pred             EEEECCCEEEECCHHHCCCCCCCCEE
Q ss_conf             36714878993230101216776448
Q gi|254780889|r  354 AIAAGSACVMIGSLLAGTDESPGDIF  379 (493)
Q Consensus       354 Ala~GA~~VM~G~~~agt~Espg~~~  379 (493)
T Consensus       210 alalGA~gV~mGTrFlat~Es~~~~~  235 (330)
T pfam03060       210 ALALGAEGVQIGTRFLATKEATAPPV  235 (330)
T ss_pred             HHHCCCCEEEECCEEEECCCCCCCHH
T ss_conf             99679989997130011577789999