HHsearch alignment for GI: 254780889 and conserved domain: pfam04551
>pfam04551 GcpE GcpE protein. In a variety of organisms, including plants and several eubacteria, isoprenoids are synthesized by the mevalonate-independent 2-C-methyl-D-erythritol 4-phosphate (MEP) pathway. Although different enzymes of this pathway have been described, the terminal biosynthetic steps of the MEP pathway have not been fully elucidated. GcpE gene of Escherichia coli is involved in this pathway.
Probab=96.51 E-value=0.031 Score=35.45 Aligned_cols=266 Identities=20% Similarity=0.259 Sum_probs=121.7
Q ss_pred CCEECCCEEEECCCCCCCHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHCCCEECCCEEEECCCCHHHHHHHHHHH
Q ss_conf 81600317833785236888999999779879997898989999999987422388152878994654303456566760
Q gi|254780889|r 42 DFTLNLPIMSAAMDQVTDSRLAIAMAQAGGLGVIHRNFSPSEQVAQVHQVKKFESGMVVNPVTISPYATLADALALMKKY 121 (493)
Q Consensus 42 ~i~l~iPivSs~MDTVTe~~MAiamA~~GGiGvIHrn~sie~qa~~V~kVKr~e~gmI~dPVti~pd~TI~ea~~lm~~~ 121 (493)
T Consensus 10 ~IGG~~PI~VQSMt~t~T~D-------------------v~atv~Qi~~L~~aGceiVR---vavp~~~~a~al~~I~~~ 67 (345)
T pfam04551 10 PIGGDAPISVQSMTNTDTRD-------------------VEATVAQIKRLEEAGCDIVR---VAVPDMEAAEALKEIKKQ 67 (345)
T ss_pred EECCCCCEEEEECCCCCCCC-------------------HHHHHHHHHHHHHCCCCEEE---ECCCCHHHHHHHHHHHHH
T ss_conf 26798957667568998620-------------------89999999999985999899---887999999849999985
Q ss_pred CCCCEEEECCCCEEEEEEEEHHHHCCC-CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCEEEEE
Q ss_conf 504167866886027887235450014-3446724400267863257303589999999865533064574799786889
Q gi|254780889|r 122 SISGIPVVESDVGKLVGILTNRDVRFA-SNAQQAVGELMTRNLITVKKTVNLENAKALLHQHRIEKLLVVDDDGCCIGLI 200 (493)
Q Consensus 122 ~is~iPVVD~~~gkLiGIVT~rDir~~-~~~~~~V~eiMt~~litv~~~~~l~eA~~iM~~~ki~~LPVVDe~g~LvGII 200 (493)
T Consensus 68 --~~iPlVADI--H-------F~~~lAl~a~~~g~~ki-RINPGNig~~~~~~~vv~~ak~~~~pIRIGv-N~GSL---- 130 (345)
T pfam04551 68 --SPIPLVADI--H-------FDYRLALEAIEAGVDKI-RINPGNIGRREKVKEVVEAAKERGIPIRIGV-NSGSL---- 130 (345)
T ss_pred --CCCCCEEEC--C-------CCHHHHHHHHHHHHCCC-CCCCCCCCCHHHHHHHHHHHHHCCCCEEEEC-CCCCC----
T ss_conf --899714004--2-------48999999998622015-6799774867878999999998399789832-67776----
Q ss_pred EECCCHHCCCCCCCCCCCCCCEEEEEEEECCCHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHCCCCC----
Q ss_conf 8021000101742232656876555665137015678999873136669982484113889999999998579872----
Q gi|254780889|r 201 TVKDIERSQLNPNATKDSKGRLRVAAAVSVAKDIADRVGPLFDVNVDLVVVDTAHGHSQKVLDAVVQIKKNFPSLL---- 276 (493)
Q Consensus 201 T~~DIlk~~~~p~A~~D~~grL~VgAAIg~~~d~~eRa~~LveaGvDviviD~ahGh~~~~~~~i~~~k~~~~~~~---- 276 (493)
T Consensus 131 -~~~~l~ky~~~~~~-------------amveSAl~~~~~~e~~~f~~iviS~KsS~v~~~i~ayr~la~~~d-yPLHLG 195 (345)
T pfam04551 131 -EKRILEKYGGPTPE-------------AMVESALEHVRILEELGFDDIVISLKASDVLVMIEAYRLLAEKTD-YPLHLG 195 (345)
T ss_pred -CHHHHHHCCCCCHH-------------HHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHCC-CCCEEC
T ss_conf -88999870898789-------------999999999999987899868999971868899999999997579-883447
Q ss_pred ------EECCCCCCHHHHHHHHHCCC-CEEEEEECCCCCCCCCHHCCCCCCCCHHHHHHHHHH-----HCCCCEEEEECC
Q ss_conf ------45146469999999985487-589961027876653100015743100378899986-----226981997265
Q gi|254780889|r 277 ------VMAGNIATAEGALALIDAGA-DIIKVGIGPGSICTTRVVTGVGCPQLSAIMSVVEVA-----ERAGVAIVADGG 344 (493)
Q Consensus 277 ------ii~GNv~t~~~~~~l~~~Ga-d~ikvGig~Gs~CtTr~~~g~g~pq~~av~~~~~~~-----~~~~~~iiadGG 344 (493)
T Consensus 196 vTEAG~~~~G~IKSs~gig~LL~~GIGDTIRVSLt~d-------------P-~~EV~v~~~IL~sl~lR~~g~~iISCPt 261 (345)
T pfam04551 196 VTEAGTGEDGTIKSAIGIGALLAEGIGDTIRVSLTED-------------P-VEEVKVAFEILQSLGLRKRGVEIISCPT 261 (345)
T ss_pred CCCCCCCCCCEEHHHHHHHHHHHCCCCCEEEEECCCC-------------C-HHHHHHHHHHHHHCCCCCCCCEEEECCC
T ss_conf 7477799881155898899999718865399967899-------------5-4789999999997287757864875887
Q ss_pred C-CCHHHHE-------E---EEEECCCEEEECCHHHCCCCCC
Q ss_conf 4-3777621-------3---3671487899323010121677
Q gi|254780889|r 345 I-RFSGDIA-------K---AIAAGSACVMIGSLLAGTDESP 375 (493)
Q Consensus 345 i-~~~gdi~-------k---Ala~GA~~VM~G~~~agt~Esp 375 (493)
T Consensus 262 CGR~~~dl~~~a~~ve~~l~~~~~~l~vAVMGCvVNGPGEak 303 (345)
T pfam04551 262 CGRTLFDLIKVAKEVEERLSHLKKPLKVAVMGCVVNGPGEAK 303 (345)
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECEEECCCCCCC
T ss_conf 466115599999999999737998988999780431876444