RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780889|ref|YP_003065302.1| inosine 5'-monophosphate
dehydrogenase [Candidatus Liberibacter asiaticus str. psy62]
(493 letters)
>gnl|CDD|180134 PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase;
Reviewed.
Length = 486
Score = 822 bits (2126), Expect = 0.0
Identities = 296/491 (60%), Positives = 385/491 (78%), Gaps = 8/491 (1%)
Query: 1 MARIIENNVGGVALTFDDVLLRPEFSNVLPRDIDISTRIAKDFTLNLPIMSAAMDQVTDS 60
M RI + ALTFDDVLL P S VLP D+D+ST++ K+ LN+P++SAAMD VT++
Sbjct: 1 MLRIAK-----EALTFDDVLLVPAHSEVLPNDVDLSTQLTKNIRLNIPLLSAAMDTVTEA 55
Query: 61 RLAIAMAQAGGLGVIHRNFSPSEQVAQVHQVKKFESGMVVNPVTISPYATLADALALMKK 120
R+AIAMA+ GG+GVIH+N S EQ +V +VK+ ESG+V +PVT++P TLA+ALALM +
Sbjct: 56 RMAIAMAREGGIGVIHKNMSIEEQAEEVRKVKRSESGVVTDPVTVTPDTTLAEALALMAR 115
Query: 121 YSISGIPVVESDVGKLVGILTNRDVRFASNAQQAVGELMTR-NLITVKKTVNLENAKALL 179
Y ISG+PVV+ + GKLVGI+TNRDVRF ++ Q V E+MT+ L+TV + LE A LL
Sbjct: 116 YGISGVPVVDEN-GKLVGIITNRDVRFETDLSQPVSEVMTKERLVTVPEGTTLEEALELL 174
Query: 180 HQHRIEKLLVVDDDGCCIGLITVKDIERSQLNPNATKDSKGRLRVAAAVSVAKDIADRVG 239
H+HRIEKL VVDD+G GLITVKDIE+++ PNA KD +GRLRV AAV V D +R
Sbjct: 175 HEHRIEKLPVVDDNGRLKGLITVKDIEKAEEFPNACKDEQGRLRVGAAVGVGADNEERAE 234
Query: 240 PLFDVNVDLVVVDTAHGHSQKVLDAVVQIKKNFPSLLVMAGNIATAEGALALIDAGADII 299
L + VD++VVDTAHGHS+ VLD V +IK +P + ++AGN+ATAE A ALI+AGAD +
Sbjct: 235 ALVEAGVDVLVVDTAHGHSEGVLDRVREIKAKYPDVQIIAGNVATAEAARALIEAGADAV 294
Query: 300 KVGIGPGSICTTRVVTGVGCPQLSAIMSVVEVAERAGVAIVADGGIRFSGDIAKAIAAGS 359
KVGIGPGSICTTR+V GVG PQ++AI E A++ G+ ++ADGGIR+SGDIAKA+AAG+
Sbjct: 295 KVGIGPGSICTTRIVAGVGVPQITAIADAAEAAKKYGIPVIADGGIRYSGDIAKALAAGA 354
Query: 360 ACVMIGSLLAGTDESPGDIFLYQGRSFKSYRGMGSVAAMERGSSARYSQDGVTDVLKLVP 419
+ VM+GS+LAGT+E+PG++ LYQGRS+KSYRGMGS+ AM +GSS RY Q V KLVP
Sbjct: 355 SAVMLGSMLAGTEEAPGEVELYQGRSYKSYRGMGSLGAMSKGSSDRYFQS-VNAADKLVP 413
Query: 420 EGIEGRVPYKGPIASVLHQMSGGLKSSMGYVGASNIEEFQKKANFIRVSVAGLRESHVHD 479
EGIEGRVPYKGP++ ++HQ+ GGL+S MGY GA+ IEE ++KA F+R++ AGLRESHVHD
Sbjct: 414 EGIEGRVPYKGPLSEIIHQLMGGLRSGMGYTGAATIEELREKAEFVRITGAGLRESHVHD 473
Query: 480 VKITRESPNYS 490
V+IT+E+PNY
Sbjct: 474 VQITKEAPNYR 484
>gnl|CDD|162293 TIGR01302, IMP_dehydrog, inosine-5'-monophosphate dehydrogenase.
This model describes a rather tightly conserved cluster
of IMP dehydrogenase sequences, many of which are
characterized. The model excludes two related families
of proteins proposed also to be IMP dehydrogenases, but
without characterized members. These are related
families are the subject of separate models.
Length = 450
Score = 611 bits (1577), Expect = e-175
Identities = 252/449 (56%), Positives = 332/449 (73%), Gaps = 4/449 (0%)
Query: 13 ALTFDDVLLRPEFSNVLPRDIDISTRIAKDFTLNLPIMSAAMDQVTDSRLAIAMAQAGGL 72
LTFDDVLL P F +V P D+D+STRI ++ LN+PI+S+ MD VT+SR+AIAMA+ GG+
Sbjct: 1 GLTFDDVLLLPGFIDVEPDDVDLSTRITRNIKLNIPILSSPMDTVTESRMAIAMAREGGI 60
Query: 73 GVIHRNFSPSEQVAQVHQVKKFESGMVVNPVTISPYATLADALALMKKYSISGIPVVESD 132
GVIHRN S EQ QV +VK+ E+G++ +PVTISP T+AD L LM++ ISGIPVVE
Sbjct: 61 GVIHRNMSIEEQAEQVKRVKRAENGIISDPVTISPETTVADVLELMERKGISGIPVVEDG 120
Query: 133 --VGKLVGILTNRDVRFASNAQQAVGELMTR-NLITVKKTVNLENAKALLHQHRIEKLLV 189
GKLVGI+T RD+RF + + V E+MTR +ITV + ++LE A +LH+HRIEKL V
Sbjct: 121 DMTGKLVGIITKRDIRFVKDKGKPVSEVMTREEVITVPEGIDLEEALKVLHEHRIEKLPV 180
Query: 190 VDDDGCCIGLITVKDIERSQLNPNATKDSKGRLRVAAAVSVAKDIADRVGPLFDVNVDLV 249
VD +G +GLIT+KDI + + P+A+KD GRL V AAV + +R L VD++
Sbjct: 181 VDKNGELVGLITMKDIVKRRKFPHASKDENGRLIVGAAVGTREFDKERAEALVKAGVDVI 240
Query: 250 VVDTAHGHSQKVLDAVVQIKKNFPSLLVMAGNIATAEGALALIDAGADIIKVGIGPGSIC 309
V+D++HGHS V+D++ +IKK +P L ++AGN+ATAE A ALIDAGAD ++VGIGPGSIC
Sbjct: 241 VIDSSHGHSIYVIDSIKEIKKTYPDLDIIAGNVATAEQAKALIDAGADGLRVGIGPGSIC 300
Query: 310 TTRVVTGVGCPQLSAIMSVVEVAERAGVAIVADGGIRFSGDIAKAIAAGSACVMIGSLLA 369
TTR+V GVG PQ++A+ V E A ++G+ ++ADGGIR+SGDI KA+AAG+ VM+GSLLA
Sbjct: 301 TTRIVAGVGVPQITAVYDVAEYAAQSGIPVIADGGIRYSGDIVKALAAGADAVMLGSLLA 360
Query: 370 GTDESPGDIFLYQGRSFKSYRGMGSVAAMERGSSARYSQDGVTDVLKLVPEGIEGRVPYK 429
GT ESPG+ + GR +K YRGMGS+ AM +GSS RY QD K VPEG+EG VPYK
Sbjct: 361 GTTESPGEYEIINGRRYKQYRGMGSLGAMTKGSSDRYLQDENKT-KKFVPEGVEGAVPYK 419
Query: 430 GPIASVLHQMSGGLKSSMGYVGASNIEEF 458
G + +L Q+ GGLKS MGYVGA +I+E
Sbjct: 420 GSVLELLPQLVGGLKSGMGYVGARSIDEL 448
>gnl|CDD|185550 PTZ00314, PTZ00314, inosine-5'-monophosphate dehydrogenase;
Provisional.
Length = 495
Score = 503 bits (1297), Expect = e-143
Identities = 196/479 (40%), Positives = 298/479 (62%), Gaps = 13/479 (2%)
Query: 12 VALTFDDVLLRPEFSNVLPRDIDISTRIAKDFTLNLPIMSAAMDQVTDSRLAIAMAQAGG 71
LT+DDV+L P + + D+D+STR+ ++ L +PI+S+ MD VT+ ++AIAMA GG
Sbjct: 16 TGLTYDDVILLPGYIDFSRDDVDLSTRLTRNIRLKIPIVSSPMDTVTEHKMAIAMALMGG 75
Query: 72 LGVIHRNFSPSEQVAQVHQVKKFESGMVVNPVTISPYATLADALALMKKYSISGIPVVES 131
+GVIH N S EQV +V +VK+FE+G +++P +SP T+AD L + +K S I +
Sbjct: 76 IGVIHNNCSIEEQVEEVRKVKRFENGFIMDPYVLSPNHTVADVLEIKEKKGFSSILITVD 135
Query: 132 DV--GKLVGILTNRDVRFASNAQQAVGELMTR--NLITVKKTVNLENAKALLHQHRIEKL 187
GKL+GI+T+RD+ F + V E+MT L+ ++LE A +L + R KL
Sbjct: 136 GKVGGKLLGIVTSRDIDFVKDKSTPVSEVMTPREKLVVGNTPISLEEANEVLRESRKGKL 195
Query: 188 LVVDDDGCCIGLITVKDIERSQLNPNATKDSKGRLRVAAAVSVAKDIADRVGPLFDVNVD 247
+V+D+G + L++ D+++++ PNA+ DS G+L V AA+S + +R L + VD
Sbjct: 196 PIVNDNGELVALVSRSDLKKNRGYPNASLDSNGQLLVGAAISTRPEDIERAAALIEAGVD 255
Query: 248 LVVVDTAHGHSQKVLDAVVQIKKNFPSLLVMAGNIATAEGALALIDAGADIIKVGIGPGS 307
++VVD++ G+S +D + ++K N+P + ++AGN+ TA+ A LIDAGAD +++G+G GS
Sbjct: 256 VLVVDSSQGNSIYQIDMIKKLKSNYPHVDIIAGNVVTADQAKNLIDAGADGLRIGMGSGS 315
Query: 308 ICTTRVVTGVGCPQLSAIMSVVEVAERAGVAIVADGGIRFSGDIAKAIAAGSACVMIGSL 367
IC T+ V VG PQ SA+ V A GV +ADGGI+ SGDI KA+A G+ CVM+GSL
Sbjct: 316 ICITQEVCAVGRPQASAVYHVARYARERGVPCIADGGIKNSGDICKALALGADCVMLGSL 375
Query: 368 LAGTDESPGDIFLYQGRSFKSYRGMGSVAAM-ERGSSARYSQDGVTDVLKLVPEGIEGRV 426
LAGT+E+PG+ F G K YRGMGS+ AM + S RY + T V +G+ G V
Sbjct: 376 LAGTEEAPGEYFFKDGVRLKVYRGMGSLEAMLSKESGERYLDENETI---KVAQGVSGSV 432
Query: 427 PYKGPIASVLHQMSGGLKSSMGYVGASNIEEFQKK-----ANFIRVSVAGLRESHVHDV 480
KG +A ++ + G+K M Y+GA +I E +K F R S + ++E VH +
Sbjct: 433 VDKGSVAKLIPYLVKGVKHGMQYIGAHSIPELHEKLYSGQVRFERRSGSAIKEGGVHSL 491
>gnl|CDD|177913 PLN02274, PLN02274, inosine-5'-monophosphate dehydrogenase.
Length = 505
Score = 352 bits (906), Expect = 1e-97
Identities = 176/482 (36%), Positives = 273/482 (56%), Gaps = 17/482 (3%)
Query: 11 GVALTFDDVLLRPEFSNVLPRDIDISTRIAKDFTLNLPIMSAAMDQVTDSRLAIAMAQAG 70
GV+ T+DDV+ P + + +D+STR++++ L++P +S+ MD VT+S +AIAMA G
Sbjct: 19 GVSYTYDDVIFHPGYIDFPADAVDLSTRLSRNIPLSIPCVSSPMDTVTESDMAIAMAALG 78
Query: 71 GLGVIHRNFSPSEQVAQVHQVKKFESGMVVNPVTISPYATLADALALMKKYSISGIPVVE 130
G+G++H N + EQ A V + K G V +PV SP +T++ L S + V E
Sbjct: 79 GIGIVHYNNTAEEQAAIVRKAKSRRVGFVSDPVVKSPSSTISSLDELKASRGFSSVCVTE 138
Query: 131 SDV--GKLVGILTNRDVRFASNAQQAVGELMTR--NLITVKKTVNLENAKALLHQHRIEK 186
+ KL+G +T RD F ++ + + E+MT +L+T ++LE A+A+L + K
Sbjct: 139 TGTMGSKLLGYVTKRDWDFVNDRETKLSEVMTSDDDLVTAPAGIDLEEAEAVLKDSKKGK 198
Query: 187 LLVVDDDGCCIGLITVKDIERSQLNPNATK---DSKGRLRVAAAVSVAKDIADRVGPLFD 243
L +V++DG + L+T D++R + P K G+L V AA+ + +R+ L
Sbjct: 199 LPLVNEDGELVDLVTRTDVKRVKGYPKLGKPSVGKDGKLLVGAAIGTRESDKERLEHLVK 258
Query: 244 VNVDLVVVDTAHGHSQKVLDAVVQIKKNFPSLLVMAGNIATAEGALALIDAGADIIKVGI 303
VD+VV+D++ G S L+ + IKK +P L V+ GN+ T A LI AG D ++VG+
Sbjct: 259 AGVDVVVLDSSQGDSIYQLEMIKYIKKTYPELDVIGGNVVTMYQAQNLIQAGVDGLRVGM 318
Query: 304 GPGSICTTRVVTGVGCPQLSAIMSVVEVAERAGVAIVADGGIRFSGDIAKAIAAGSACVM 363
G GSICTT+ V VG Q +A+ V +A + GV ++ADGGI SG I KA+ G++ VM
Sbjct: 319 GSGSICTTQEVCAVGRGQATAVYKVASIAAQHGVPVIADGGISNSGHIVKALTLGASTVM 378
Query: 364 IGSLLAGTDESPGDIFLYQGRSFKSYRGMGSVAAMERGSSARYSQDGVTDVLKL-VPEGI 422
+GS LAGT E+PG+ F G K YRGMGS+ AM +GS RY + D KL + +G+
Sbjct: 379 MGSFLAGTTEAPGEYFYQDGVRVKKYRGMGSLEAMTKGSDQRY----LGDTAKLKIAQGV 434
Query: 423 EGRVPYKGPIASVLHQMSGGLKSSMGYVGASNIEEFQKK--ANFIRVSV---AGLRESHV 477
G V KG + + +K +GAS+++ + + +R+ V A E V
Sbjct: 435 SGAVADKGSVLKFVPYTMQAVKQGFQDLGASSLQSAHELLRSGTLRLEVRTGAAQVEGGV 494
Query: 478 HD 479
H
Sbjct: 495 HG 496
>gnl|CDD|181127 PRK07807, PRK07807, inosine 5-monophosphate dehydrogenase;
Validated.
Length = 479
Score = 314 bits (806), Expect = 4e-86
Identities = 188/481 (39%), Positives = 276/481 (57%), Gaps = 38/481 (7%)
Query: 14 LTFDDVLLRPEFSNVLPR-DIDISTRIAKDFT-LNLPIMSAAMDQVTDSRLAIAMAQAGG 71
LT+DDV L P S+V R D+D+ST D T +P++ A M V R+A +A+ GG
Sbjct: 13 LTYDDVFLVPSRSDVGSRFDVDLSTA---DGTGTTIPLVVANMTAVAGRRMAETVARRGG 69
Query: 72 LGVIHRNFSPSEQVAQ-VHQVKK----FESGMVVNPVTISPYATLADALALMKKYSISGI 126
L V+ ++ P + VA+ V VK F++ PVT+SP T+ DALAL+ K + G
Sbjct: 70 LVVLPQDI-PIDVVAEVVAWVKSRDLVFDT-----PVTLSPDDTVGDALALLPKRA-HGA 122
Query: 127 PVVESDVGKLVGILTNRDV----RFASNAQQAVGELMTRNLITVKKTVNLENAKALLHQH 182
VV + G+ VG++T D RF V ++M+ +L+T+ + A LL
Sbjct: 123 VVVVDEEGRPVGVVTEADCAGVDRFTQ-----VRDVMSTDLVTLPAGTDPREAFDLLEAA 177
Query: 183 RIEKLLVVDDDGCCIGLITVKDIERSQLNPNATKDSKGRLRVAAAVSVAKDIADRVGPLF 242
R++ VVD DG +G++T R+ + A D+ GRLRVAAAV + D+A + L
Sbjct: 178 RVKLAPVVDADGRLVGVLTRTGALRATIYTPAV-DAAGRLRVAAAVGINGDVAAKARALL 236
Query: 243 DVNVDLVVVDTAHGHSQKVLDAVVQIKKNFPSLLVMAGNIATAEGALALIDAGADIIKVG 302
+ VD++VVDTAHGH +K+L+A+ ++ P + ++AGN+ TAEG L++AGADI+KVG
Sbjct: 237 EAGVDVLVVDTAHGHQEKMLEALRAVRALDPGVPIVAGNVVTAEGTRDLVEAGADIVKVG 296
Query: 303 IGPGSICTTRVVTGVGCPQLSAIMSVVEVAERAGVAIVADGGIRFSGDIAKAIAAGSACV 362
+GPG++CTTR++TGVG PQ SA++ A G + ADGG+R D+A A+AAG++ V
Sbjct: 297 VGPGAMCTTRMMTGVGRPQFSAVLECAAAARELGAHVWADGGVRHPRDVALALAAGASNV 356
Query: 363 MIGSLLAGTDESPGDIFL-YQGRSFKSYRGMGSVAAMERGSSARYSQDGVTDVLK--LVP 419
MIGS AGT ESPGD+ GR +K GM S R +AR + D D + L
Sbjct: 357 MIGSWFAGTYESPGDLMRDRDGRPYKESFGMAS----ARAVAARTAGDSAFDRARKALFE 412
Query: 420 EGIE-GRV---PYKGPIASVLHQMSGGLKSSMGYVGASNIEEFQKKANFIRVSVAGLRES 475
EGI R+ P + + +L ++ G++SS Y GA + EF ++A S AG E
Sbjct: 413 EGISTSRMYLDPGRPGVEDLLDHITSGVRSSCTYAGARTLAEFHERAVVGVQSAAGYAEG 472
Query: 476 H 476
Sbjct: 473 R 473
>gnl|CDD|180725 PRK06843, PRK06843, inosine 5-monophosphate dehydrogenase;
Validated.
Length = 404
Score = 310 bits (795), Expect = 5e-85
Identities = 149/278 (53%), Positives = 199/278 (71%)
Query: 203 KDIERSQLNPNATKDSKGRLRVAAAVSVAKDIADRVGPLFDVNVDLVVVDTAHGHSQKVL 262
K+ E + PNA KD +LRV AAVS+ D +RV L +VD++V+D+AHGHS +++
Sbjct: 123 KNAEHKEDFPNACKDLNNKLRVGAAVSIDIDTIERVEELVKAHVDILVIDSAHGHSTRII 182
Query: 263 DAVVQIKKNFPSLLVMAGNIATAEGALALIDAGADIIKVGIGPGSICTTRVVTGVGCPQL 322
+ V +IK +P+L ++AGNI T E AL LI GAD +KVGIGPGSICTTR+V GVG PQ+
Sbjct: 183 ELVKKIKTKYPNLDLIAGNIVTKEAALDLISVGADCLKVGIGPGSICTTRIVAGVGVPQI 242
Query: 323 SAIMSVVEVAERAGVAIVADGGIRFSGDIAKAIAAGSACVMIGSLLAGTDESPGDIFLYQ 382
+AI V EV + + I+ADGGIRFSGD+ KAIAAG+ VMIG+L AGT ESP + +Y
Sbjct: 243 TAICDVYEVCKNTNICIIADGGIRFSGDVVKAIAAGADSVMIGNLFAGTKESPSEEIIYN 302
Query: 383 GRSFKSYRGMGSVAAMERGSSARYSQDGVTDVLKLVPEGIEGRVPYKGPIASVLHQMSGG 442
G+ FKSY GMGS++AM+RGS +RY Q + KLVPEGIEG VPY G + +L Q+ GG
Sbjct: 303 GKKFKSYVGMGSISAMKRGSKSRYFQLENNEPKKLVPEGIEGMVPYSGKLKDILTQLKGG 362
Query: 443 LKSSMGYVGASNIEEFQKKANFIRVSVAGLRESHVHDV 480
L S MGY+GA+ I + + + F+++S + L+ESH HDV
Sbjct: 363 LMSGMGYLGAATISDLKINSKFVKISHSSLKESHPHDV 400
Score = 90.9 bits (225), Expect = 6e-19
Identities = 41/95 (43%), Positives = 67/95 (70%)
Query: 7 NNVGGVALTFDDVLLRPEFSNVLPRDIDISTRIAKDFTLNLPIMSAAMDQVTDSRLAIAM 66
N + ALTFDDV L P S+VLP ++ + T++ K+ +LN+P +S+AMD VT+S++AIA+
Sbjct: 3 NKITKEALTFDDVSLIPRKSSVLPSEVSLKTQLTKNISLNIPFLSSAMDTVTESQMAIAI 62
Query: 67 AQAGGLGVIHRNFSPSEQVAQVHQVKKFESGMVVN 101
A+ GG+G+IH+N S Q ++ +VK ++ +N
Sbjct: 63 AKEGGIGIIHKNMSIEAQRKEIEKVKTYKFQKTIN 97
>gnl|CDD|180842 PRK07107, PRK07107, inosine 5-monophosphate dehydrogenase;
Validated.
Length = 502
Score = 291 bits (746), Expect = 4e-79
Identities = 169/512 (33%), Positives = 261/512 (50%), Gaps = 31/512 (6%)
Query: 1 MARIIENNVGGVALTFDDVLLRPEFSNV--LPRDIDISTRIAK-------DFTLNLPIMS 51
MA E + TF + LL P S+ +P ++ + T + K TLN+P++S
Sbjct: 1 MAFYFE----EPSRTFSEYLLVPGLSSKECVPANVSLKTPLVKFKKGEESAITLNIPLVS 56
Query: 52 AAMDQVTDSRLAIAMAQAGGLGVIHRNFSPSEQVAQVHQVKKFESGMVVNPVTISPYATL 111
A M V+D +AIA+A+ GGL I + S + A V +VK +++G VV+ ++P TL
Sbjct: 57 AIMQSVSDDNMAIALAREGGLSFIFGSQSIESEAAMVRRVKNYKAGFVVSDSNLTPDNTL 116
Query: 112 ADALALMKKYSISGIPVVE--SDVGKLVGILTNRDVR-FASNAQQAVGELMT--RNLITV 166
AD L L +K S + V E + GKL+GI+T+RD R + V + MT L+T
Sbjct: 117 ADVLDLKEKTGHSTVAVTEDGTAHGKLLGIVTSRDYRISRMSLDTKVKDFMTPFEKLVTA 176
Query: 167 KKTVNLENAKALLHQHRIEKLLVVDDDGCCIGLITVKDIERSQLNPNATKDSKGRLRVAA 226
+ L+ A ++ H++ L +VD +G + L+ KD + + NP DS R V A
Sbjct: 177 NEGTTLKEANDIIWDHKLNTLPIVDKNGNLVYLVFRKDYDSHKENPLELLDSSKRYVVGA 236
Query: 227 AVSVAKDIADRVGPLFDVNVDLVVVDTAHGHSQKVLDAVVQIKKNF-PSLLVMAGNIATA 285
++ +D A+RV L + D++ +D++ G+S+ + I++ + S+ V AGN+
Sbjct: 237 GIN-TRDYAERVPALVEAGADVLCIDSSEGYSEWQKRTLDWIREKYGDSVKVGAGNVVDR 295
Query: 286 EGALALIDAGADIIKVGIGPGSICTTRVVTGVGCPQLSAIMSVV----EVAERAGV--AI 339
EG L +AGAD +KVGIG GSIC TR G+G Q +A++ V E E GV I
Sbjct: 296 EGFRYLAEAGADFVKVGIGGGSICITREQKGIGRGQATALIEVAKARDEYFEETGVYIPI 355
Query: 340 VADGGIRFSGDIAKAIAAGSACVMIGSLLAGTDESPGDIFLYQGRSFKSYRGMGSVAAME 399
+DGGI + + A+A G+ +M+G A DESP + G K Y G GS A
Sbjct: 356 CSDGGIVYDYHMTLALAMGADFIMLGRYFARFDESPTNKVNINGNYMKEYWGEGSNRAR- 414
Query: 400 RGSSARYSQDGVTDVLKLVPEGIEGRVPYKGPIASVLHQMSGGLKSSMGYVGASNIEEFQ 459
+ RY G + EG++ VPY G + + ++S+M GA +I E Q
Sbjct: 415 --NWQRYDLGGDKKL--SFEEGVDSYVPYAGSLKDNVAITLSKVRSTMCNCGALSIPELQ 470
Query: 460 KKANFIRVSVAGLRESHVHDVKITRESPNYSE 491
+KA VS + E HDV + +S N +
Sbjct: 471 QKAKITLVSSTSIVEGGAHDVILKDKSNNLIK 502
>gnl|CDD|130370 TIGR01303, IMP_DH_rel_1, IMP dehydrogenase family protein. This
model represents a family of proteins, often annotated
as a putative IMP dehydrogenase, related to IMP
dehydrogenase and GMP reductase and restricted to the
high GC Gram-positive bacteria. All species in which a
member is found so far (Corynebacterium glutamicum,
Mycobacterium tuberculosis, Streptomyces coelicolor,
etc.) also have IMP dehydrogenase as described by
TIGRFAMs entry TIGR01302.
Length = 475
Score = 278 bits (712), Expect = 2e-75
Identities = 170/482 (35%), Positives = 267/482 (55%), Gaps = 19/482 (3%)
Query: 3 RIIENNVGGVALTFDDVLLRPEFSNVLPR-DIDISTRIAKDFTLNLPIMSAAMDQVTDSR 61
R + + G LT++DV + P S V R D+D+ST T+ P++ A M V R
Sbjct: 1 RFLNGHPPGYDLTYNDVFMVPSRSEVGSRFDVDLSTADGTGTTI--PLVVANMTAVAGRR 58
Query: 62 LAIAMAQAGGLGVIHRNFSPSEQVAQVHQVKKFESGMVVNPVTISPYATLADALALMKKY 121
+A +A+ GG+ ++ ++ P V Q K ++ P+T++P+ T++DA+AL+ K
Sbjct: 59 MAETVARRGGIVILPQDL-PIPAVKQTVAFVKSRDLVLDTPITLAPHDTVSDAMALIHKR 117
Query: 122 SISGIPVVESDVGKLVGILTNRDVRFASNAQQAVGELMTRNLITVKKTVNLENAKALLHQ 181
+ V+ D + VG++T+ D+ Q V ++M+ +L+T A LL
Sbjct: 118 AHGAAVVILED--RPVGLVTDSDLLGVDRFTQ-VRDIMSTDLVTAPADTEPRKAFDLLEH 174
Query: 182 HRIEKLLVVDDDGCCIGLITVKDIERSQLNPNATKDSKGRLRVAAAVSVAKDIADRVGPL 241
+ +VD DG G++T R+ + AT D+ GRLR+ AAV + D+ + L
Sbjct: 175 APRDVAPLVDADGTLAGILTRTGALRATIYTPAT-DAAGRLRIGAAVGINGDVGGKAKAL 233
Query: 242 FDVNVDLVVVDTAHGHSQKVLDAVVQIKKNFPSLLVMAGNIATAEGALALIDAGADIIKV 301
D VD++V+DTAHGH K++ A+ ++ + ++AGN+ +AEG L++AGA+IIKV
Sbjct: 234 LDAGVDVLVIDTAHGHQVKMISAIKAVRALDLGVPIVAGNVVSAEGVRDLLEAGANIIKV 293
Query: 302 GIGPGSICTTRVVTGVGCPQLSAIMSVVEVAERAGVAIVADGGIRFSGDIAKAIAAGSAC 361
G+GPG++CTTR++TGVG PQ SA++ A + G + ADGG+R D+A A+AAG++
Sbjct: 294 GVGPGAMCTTRMMTGVGRPQFSAVLECAAEARKLGGHVWADGGVRHPRDVALALAAGASN 353
Query: 362 VMIGSLLAGTDESPGDI-FLYQGRSFKSYRGMGSVAAMERGSSARYSQDGVTDVLK--LV 418
VM+GS AGT ESPGD+ GR +K GM S A+ AR D D + L
Sbjct: 354 VMVGSWFAGTYESPGDLMRDRDGRPYKESFGMASKRAVV----ARTGADNAFDRARKALF 409
Query: 419 PEGIE----GRVPYKGPIASVLHQMSGGLKSSMGYVGASNIEEFQKKANFIRVSVAGLRE 474
EGI G P +G + ++ + G++SS Y GAS++EEF ++A S AG E
Sbjct: 410 EEGISTSRMGLDPDRGGVEDLIDHIISGVRSSCTYAGASSLEEFHERAVVGVQSGAGYAE 469
Query: 475 SH 476
Sbjct: 470 GK 471
>gnl|CDD|179935 PRK05096, PRK05096, guanosine 5'-monophosphate oxidoreductase;
Provisional.
Length = 346
Score = 207 bits (530), Expect = 4e-54
Identities = 93/220 (42%), Positives = 131/220 (59%), Gaps = 12/220 (5%)
Query: 251 VDTAHGHSQKVLDAVVQIKKNFPSLLVMAGNIATAEGALALIDAGADIIKVGIGPGSICT 310
+D A+G+S+ + V + ++ +P + AGN+ T E LI +GADI+KVGIGPGS+CT
Sbjct: 128 IDVANGYSEHFVQFVAKAREAWPDKTICAGNVVTGEMVEELILSGADIVKVGIGPGSVCT 187
Query: 311 TRVVTGVGCPQLSAIMSVVEVAERAGVAIVADGGIRFSGDIAKAIAAGSACVMIGSLLAG 370
TRV TGVG PQLSA++ + A G IV+DGG GD+AKA G+ VM+G +LAG
Sbjct: 188 TRVKTGVGYPQLSAVIECADAAHGLGGQIVSDGGCTVPGDVAKAFGGGADFVMLGGMLAG 247
Query: 371 TDESPGDIFLYQGRSFKSYRGMGSVAAMER--GSSARYSQDGVTDVLKLVPEGIEGRVPY 428
+ES G+I G F + GM S +AM+R G A Y EG ++P
Sbjct: 248 HEESGGEIVEENGEKFMLFYGMSSESAMKRHVGGVAEYR----------AAEGKTVKLPL 297
Query: 429 KGPIASVLHQMSGGLKSSMGYVGASNIEEFQKKANFIRVS 468
+GP+ + + GGL+S+ YVGAS ++E K+ FIRV
Sbjct: 298 RGPVENTARDILGGLRSACTYVGASRLKELTKRTTFIRVQ 337
Score = 39.5 bits (93), Expect = 0.002
Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 13/89 (14%)
Query: 14 LTFDDVLLRPEFSNVLPR-DIDISTRIAKDFTL--------NLPIMSAAMDQVTDSRLAI 64
L F DVL+RP+ S + R D+++ + FT +PI++A MD V +A
Sbjct: 9 LGFKDVLIRPKRSTLKSRSDVELE----RQFTFKHSGQSWSGVPIIAANMDTVGTFEMAK 64
Query: 65 AMAQAGGLGVIHRNFSPSEQVAQVHQVKK 93
A+A L +H+++S E A V+
Sbjct: 65 ALASFDILTAVHKHYSVEEWAAFVNNSSA 93
>gnl|CDD|130372 TIGR01305, GMP_reduct_1, guanosine monophosphate reductase,
eukaryotic. A deep split separates two families of GMP
reductase. This family includes both eukaryotic and some
proteobacterial sequences, while the other family
contains other bacterial sequences.
Length = 343
Score = 189 bits (481), Expect = 2e-48
Identities = 93/225 (41%), Positives = 135/225 (60%), Gaps = 12/225 (5%)
Query: 246 VDLVVVDTAHGHSQKVLDAVVQIKKNFPSLLVMAGNIATAEGALALIDAGADIIKVGIGP 305
+ + +D A+G+S+ ++ V +++ FP +MAGN+ T E LI +GADI+KVGIGP
Sbjct: 122 LKFICLDVANGYSEHFVEFVKLVREAFPEHTIMAGNVVTGEMVEELILSGADIVKVGIGP 181
Query: 306 GSICTTRVVTGVGCPQLSAIMSVVEVAERAGVAIVADGGIRFSGDIAKAIAAGSACVMIG 365
GS+CTTR TGVG PQLSA++ + A I++DGG GD+AKA AG+ VM+G
Sbjct: 182 GSVCTTRTKTGVGYPQLSAVIECADAAHGLKGHIISDGGCTCPGDVAKAFGAGADFVMLG 241
Query: 366 SLLAGTDESPGDIFLYQGRSFKSYRGMGSVAAMER--GSSARYSQDGVTDVLKLVPEGIE 423
+ AG ES G++ GR FK + GM S AM++ G A Y EG
Sbjct: 242 GMFAGHTESGGEVIERNGRKFKLFYGMSSDTAMKKHAGGVAEYR----------ASEGKT 291
Query: 424 GRVPYKGPIASVLHQMSGGLKSSMGYVGASNIEEFQKKANFIRVS 468
VPY+G + + + + GGL+S+ YVGA+ ++E K+A FIRV+
Sbjct: 292 VEVPYRGDVENTILDILGGLRSACTYVGAAKLKELSKRATFIRVT 336
Score = 39.1 bits (91), Expect = 0.002
Identities = 26/75 (34%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 14 LTFDDVLLRPEFSNVLPR-DIDIST----RIAKDFTLNLPIMSAAMDQVTDSRLAIAMAQ 68
L F DVLLRP+ S + R D+++ R +K +PI++A MD V +A A++Q
Sbjct: 8 LDFKDVLLRPKRSTLKSRADVELERTFTFRNSKQTYSGVPIIAANMDTVGTFEMAAALSQ 67
Query: 69 AGGLGVIHRNFSPSE 83
IH+++S E
Sbjct: 68 HSIFTAIHKHYSVDE 82
>gnl|CDD|180097 PRK05458, PRK05458, guanosine 5'-monophosphate oxidoreductase;
Provisional.
Length = 326
Score = 171 bits (436), Expect = 3e-43
Identities = 89/223 (39%), Positives = 125/223 (56%), Gaps = 21/223 (9%)
Query: 247 DLVVVDTAHGHSQKVLDAVVQIKKNFPSLLVMAGNIATAEGALALIDAGADIIKVGIGPG 306
+ + +D AHGHS V++ + IKK+ P V+AGN+ T E L +AGAD KVGIGPG
Sbjct: 113 EYITIDIAHGHSDSVINMIQHIKKHLPETFVIAGNVGTPEAVRELENAGADATKVGIGPG 172
Query: 307 SICTTRVVTGVGCP--QLSAIMSVVEVAERAGVAIVADGGIRFSGDIAKAIAAGSACVMI 364
+C T++ TG G QL+A+ + A + I+ADGGIR GDIAK+I G+ VMI
Sbjct: 173 KVCITKIKTGFGTGGWQLAALRWCAKAARK---PIIADGGIRTHGDIAKSIRFGATMVMI 229
Query: 365 GSLLAGTDESPGDIFLYQGRSFKSYRGMGSVAAMERGSSARYSQDGVTDVLKLVPEGIEG 424
GSL AG +ESPG G+ +K Y G SA Q G K V EG +
Sbjct: 230 GSLFAGHEESPGKTVEIDGKLYKEYFG-----------SASEFQKGEY---KNV-EGKKI 274
Query: 425 RVPYKGPIASVLHQMSGGLKSSMGYVGASNIEEFQKKANFIRV 467
VP+KG + L +M L+SS+ Y G +++ +K +++ V
Sbjct: 275 LVPHKGSLKDTLTEMEQDLQSSISYAGGRDLDAI-RKVDYVIV 316
Score = 34.5 bits (80), Expect = 0.066
Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 3/79 (3%)
Query: 16 FDDVLLRPEFSNVLPR-DIDISTRIAKDFTLNLPIMSAAMDQVTDSRLAIAMAQAGGLGV 74
++D+ L P V R + D S + T LP++ A M + D ++A +A+ G +
Sbjct: 7 YEDIQLIPNKCIVNSRSECDTSVTLGP-RTFKLPVVPANMQTIIDEKIAEWLAENGYFYI 65
Query: 75 IHRNFSPSEQVAQVHQVKK 93
+HR F P ++ + + +
Sbjct: 66 MHR-FDPEARIPFIKDMHE 83
>gnl|CDD|130373 TIGR01306, GMP_reduct_2, guanosine monophosphate reductase,
bacterial. A deep split separates two families of GMP
reductase. The other (TIGR01305) is found in eukaryotic
and some proteobacterial lineages, including E. coli,
while this family is found in a variety of bacterial
lineages.
Length = 321
Score = 150 bits (381), Expect = 6e-37
Identities = 81/215 (37%), Positives = 120/215 (55%), Gaps = 20/215 (9%)
Query: 247 DLVVVDTAHGHSQKVLDAVVQIKKNFPSLLVMAGNIATAEGALALIDAGADIIKVGIGPG 306
+ + +D AHGHS V++ + IK + P V+AGN+ T E L +AGAD KVGIGPG
Sbjct: 110 EYITIDIAHGHSNSVINMIKHIKTHLPDSFVIAGNVGTPEAVRELENAGADATKVGIGPG 169
Query: 307 SICTTRVVTGVGCP--QLSAIMSVVEVAERAGVAIVADGGIRFSGDIAKAIAAGSACVMI 364
+C T++ TG G QL+A+ + A + I+ADGGIR GDIAK+I G++ VMI
Sbjct: 170 KVCITKIKTGFGTGGWQLAALRWCAKAARK---PIIADGGIRTHGDIAKSIRFGASMVMI 226
Query: 365 GSLLAGTDESPGDIFLYQGRSFKSYRGMGSVAAMERGSSARYSQDGVTDVLKLVPEGIEG 424
GSL AG +ESPG+ G+ +K Y GS + ++G EG +
Sbjct: 227 GSLFAGHEESPGETVEKDGKLYKEY--FGSASEFQKGEHKNV-------------EGKKM 271
Query: 425 RVPYKGPIASVLHQMSGGLKSSMGYVGASNIEEFQ 459
V +KG ++ L +M L+SS+ Y G +++ +
Sbjct: 272 FVEHKGSLSDTLIEMQQDLQSSISYAGGKDLDSLR 306
Score = 33.4 bits (76), Expect = 0.15
Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Query: 16 FDDVLLRPEFSNVLPR-DIDISTRIAKDFTLNLPIMSAAMDQVTDSRLAIAMAQAGGLGV 74
++D+ L P V R + D S + K LP++ A M + D +LA +A+ G +
Sbjct: 4 YEDIQLIPNKCIVNSRSECDTSVTLGK-HKFKLPVVPANMQTIIDEKLAEQLAENGYFYI 62
Query: 75 IHRNFSPSEQV 85
+HR F ++
Sbjct: 63 MHR-FDEESRI 72
>gnl|CDD|181521 PRK08649, PRK08649, inosine 5-monophosphate dehydrogenase;
Validated.
Length = 368
Score = 123 bits (311), Expect = 1e-28
Identities = 85/264 (32%), Positives = 119/264 (45%), Gaps = 60/264 (22%)
Query: 224 VAAAVSVAKDIADRVGP-LFDVNVDLVV-----VDTAH-GHSQKVLDAVVQIKKNFPSLL 276
V AVS++ A + P + + VDL V V H + L+ K F L
Sbjct: 132 VIVAVSLSPQRAQELAPTVVEAGVDLFVIQGTVVSAEHVSKEGEPLNL-----KEFIYEL 186
Query: 277 ---VMAGNIATAEGALALIDAGADIIKVGIGPGSICTTRVVTGVGCPQLSAIMSVVE--- 330
V+ G T AL L+ GA + VGIGPG+ CT+R V G+G P +AI V
Sbjct: 187 DVPVIVGGCVTYTTALHLMRTGAAGVLVGIGPGAACTSRGVLGIGVPMATAIADVAAARR 246
Query: 331 --VAERAG--VAIVADGGIRFSGDIAKAIAAGSACVMIGSLLAGTDESPGDIFLYQGRSF 386
+ E G V ++ADGGI SGDIAKAIA G+ VM+GS LA E+PG + +
Sbjct: 247 DYLDETGGRYVHVIADGGIGTSGDIAKAIACGADAVMLGSPLARAAEAPGRGWHW----- 301
Query: 387 KSYRGMGSVAAMERGSSARYSQDGVTDVLKLVPEGIEGRVPYKGPIASVL---------- 436
G +A + +P G +V G + +L
Sbjct: 302 --------------GMAAPHPS---------LPRGTRIKVGTTGSLEQILFGPSHLPDGT 338
Query: 437 HQMSGGLKSSMGYVGASNIEEFQK 460
H + G L+ SM +G S+++EFQK
Sbjct: 339 HNLVGALRRSMATLGYSDLKEFQK 362
Score = 51.4 bits (124), Expect = 5e-07
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 16 FDDVLLRPEFSNVLPRDIDISTRIAKDFTLNLPIMSAAMDQVTDSRLAIAMAQAGGLGVI 75
D++ + P P D+ S +I + +PI+++ MD V AI + + GGLGV+
Sbjct: 18 LDEIAIVPSRRTRDPEDVSTSWQID-AYRFEIPIIASPMDAVVSPETAIELGKLGGLGVL 76
Query: 76 H 76
+
Sbjct: 77 N 77
>gnl|CDD|162294 TIGR01304, IMP_DH_rel_2, IMP dehydrogenase family protein. This
model represents a family of proteins, often annotated
as a putative IMP dehydrogenase, related to IMP
dehydrogenase and GMP reductase. Most species with a
member of this family belong to the high GC
Gram-positive bacteria, and these also have the IMP
dehydrogenase described by TIGRFAMs equivalog model
TIGR01302.
Length = 369
Score = 93.4 bits (232), Expect = 1e-19
Identities = 84/299 (28%), Positives = 129/299 (43%), Gaps = 39/299 (13%)
Query: 181 QHRIEKLLVVDDDGCCIGLI-TVKDIERSQLNPNATKDSKGRLR---VAAAVSVAKDIAD 236
I K+ ++G ++++ + L P + +R V AV V+ A
Sbjct: 86 DPAIAKIAEAYEEGDQAAATRLLQELHAAPLKPELLGERIAEVRDSGVITAVRVSPQNAR 145
Query: 237 RVGP-LFDVNVDLVV-----VDTAH-GHSQKVLDAVVQIKK-NFPSLLVMAGNIATAEGA 288
+ P + DL+V V H S + L+ I + + P V+AG + A
Sbjct: 146 EIAPIVVKAGADLLVIQGTLVSAEHVSTSGEPLNLKEFIGELDVP---VIAGGVNDYTTA 202
Query: 289 LALIDAGADIIKVGIGPGSICTTRVVTGVGCPQLSAIMSVVE-----VAERAG--VAIVA 341
L L+ GA V +GPG TTR+V G+ P +AI V + E G V ++A
Sbjct: 203 LHLMRTGA--AGVIVGPGGANTTRLVLGIEVPMATAIADVAAARRDYLDETGGRYVHVIA 260
Query: 342 DGGIRFSGDIAKAIAAGSACVMIGSLLAGTDESPGDIFLYQGRSFKSYRGMGSVAAMERG 401
DGGI SGD+ KAIA G+ V++GS LA E+PG + + + AA R
Sbjct: 261 DGGIETSGDLVKAIACGADAVVLGSPLARAAEAPGRGYFW-----------PAAAAHPRL 309
Query: 402 SSARYSQDGVTDVLKLVPEGIEGRVPYKGPIASVLHQMSGGLKSSMGYVGASNIEEFQK 460
++ G + E + G P P GGLK +M G ++++EFQK
Sbjct: 310 PRGVVTESGTVGEAPTLEEILHG--PSTLPDGV--ENFEGGLKRAMAKCGYTDLKEFQK 364
Score = 41.7 bits (98), Expect = 4e-04
Identities = 20/87 (22%), Positives = 41/87 (47%), Gaps = 7/87 (8%)
Query: 13 ALTFDDVLLRPEFSNVLPRDIDISTRIAKDFTLNLPIMSAAMDQVTDSRLAIAMAQAGGL 72
+ DD+ + P +D+D + +I + LP ++ MD + AI + + GGL
Sbjct: 12 TYSLDDISVVPSRRTRSSKDVDTAWQIDA-YRFELPFIAHPMDALVSPEFAIELGELGGL 70
Query: 73 GVIH------RNFSPSEQVAQVHQVKK 93
GV++ R+ P +A++ + +
Sbjct: 71 GVLNLEGLWGRHEDPDPAIAKIAEAYE 97
>gnl|CDD|129488 TIGR00393, kpsF, KpsF/GutQ family protein. This model describes a
number of closely related proteins with the
phosphosugar-binding domain SIS (Sugar ISomerase)
followed by two copies of the CBS (named after
Cystathionine Beta Synthase) domain. One is GutQ, a
protein of the glucitol operon. Another is KpsF, a
virulence factor involved in capsular polysialic acid
biosynthesis in some pathogenic strains of E. coli.
Length = 268
Score = 49.8 bits (119), Expect = 2e-06
Identities = 51/194 (26%), Positives = 80/194 (41%), Gaps = 24/194 (12%)
Query: 22 RPEFSNVLPRDIDISTRIAKDFT-LNL-PIMSAAMDQVTDSRLAIAMAQAGGLGVIHRNF 79
P S D + ++ K+ +NL P S + LA+A+ +A RNF
Sbjct: 83 SPNSSLARAADYVLDIKVEKEACPINLAPTTSTTLTLALGDALAVALMRA-------RNF 135
Query: 80 SPSEQVAQVHQ---------VKKFESGMVVNPVTISPYATLADALALMKKYSISGIPVVE 130
S E A H VK + + I+P + DAL M + + G +V
Sbjct: 136 SQ-EDFASFHPGGALGRKLLVKVKDLMQTTDLPLIAPTTSFKDALLEMSEKRL-GSAIVC 193
Query: 131 SDVGKLVGILTNRDVRFASNA----QQAVGELMTRNLITVKKTVNLENAKALLHQHRIEK 186
+ +LVG+ T+ D+R A + V + MT T K L A L + +I
Sbjct: 194 DENNQLVGVFTDGDLRRALLGGGSLKSEVRDFMTLGPKTFKLDALLLEALEFLERRKITS 253
Query: 187 LLVVDDDGCCIGLI 200
L+VVDD +G++
Sbjct: 254 LVVVDDHNKVLGVL 267
Score = 28.2 bits (63), Expect = 4.4
Identities = 14/54 (25%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 155 VGELM-TRNLITVKKTVNLENAKALLHQHRIEKLLVVDDDGCCIGLITVKDIER 207
V +LM T +L + T + ++A + + R+ +V D++ +G+ T D+ R
Sbjct: 157 VKDLMQTTDLPLIAPTTSFKDALLEMSEKRLGSAIVCDENNQLVGVFTDGDLRR 210
>gnl|CDD|184871 PRK14869, PRK14869, putative manganese-dependent inorganic
pyrophosphatase; Provisional.
Length = 546
Score = 49.4 bits (119), Expect = 2e-06
Identities = 16/63 (25%), Positives = 36/63 (57%)
Query: 155 VGELMTRNLITVKKTVNLENAKALLHQHRIEKLLVVDDDGCCIGLITVKDIERSQLNPNA 214
V +L +TV +L+ A L+ ++ ++ L VVD++G +GL+++ D+ R+ ++
Sbjct: 70 VRDLEIDKPVTVSPDTSLKEAWNLMDENNVKTLPVVDEEGKLLGLVSLSDLARAYMDILD 129
Query: 215 TKD 217
+
Sbjct: 130 PEI 132
Score = 47.1 bits (113), Expect = 9e-06
Identities = 17/44 (38%), Positives = 30/44 (68%), Gaps = 1/44 (2%)
Query: 101 NPVTISPYATLADALALMKKYSISGIPVVESDVGKLVGILTNRD 144
PVT+SP +L +A LM + ++ +PVV+ + GKL+G+++ D
Sbjct: 77 KPVTVSPDTSLKEAWNLMDENNVKTLPVVDEE-GKLLGLVSLSD 119
Score = 34.0 bits (79), Expect = 0.092
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 5/63 (7%)
Query: 155 VGELM-TRNLITVKKTVNLENAKALLHQHRIEKLLVVDDDGCCIGLITVKDIERSQLNPN 213
V +M T +L+T K LE+ K ++ + R VVD+DG +G+I+ + L+P
Sbjct: 248 VSYIMTTEDLVTFSKDDYLEDVKEVMLKSRYRSYPVVDEDGKVVGVISRYHL----LSPV 303
Query: 214 ATK 216
K
Sbjct: 304 RKK 306
>gnl|CDD|128426 smart00116, CBS, Domain in cystathionine beta-synthase and other
proteins. Domain present in all 3 forms of cellular
life. Present in two copies in inosine monophosphate
dehydrogenase, of which one is disordered in the crystal
structure [3]. A number of disease states are associated
with CBS-containing proteins including homocystinuria,
Becker's and Thomsen disease.
Length = 49
Score = 48.3 bits (116), Expect = 4e-06
Identities = 21/45 (46%), Positives = 34/45 (75%), Gaps = 1/45 (2%)
Query: 101 NPVTISPYATLADALALMKKYSISGIPVVESDVGKLVGILTNRDV 145
+ VT+SP TL +AL L++++ I +PVV+ + G+LVGI+T RD+
Sbjct: 1 DVVTVSPDTTLEEALELLREHGIRRLPVVDEE-GRLVGIVTRRDI 44
Score = 39.4 bits (93), Expect = 0.002
Identities = 18/44 (40%), Positives = 29/44 (65%)
Query: 162 NLITVKKTVNLENAKALLHQHRIEKLLVVDDDGCCIGLITVKDI 205
+++TV LE A LL +H I +L VVD++G +G++T +DI
Sbjct: 1 DVVTVSPDTTLEEALELLREHGIRRLPVVDEEGRLVGIVTRRDI 44
>gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding
subunit. This model describes the glycine
betaine/L-proline ATP binding subunit in bacteria and
its equivalents in archaea. This transport system belong
to the larger ATP-Binding Cassette (ABC) transporter
superfamily. The characteristic feature of these
transporter is the obligatory coupling of ATP hydrolysis
to substrate translocation. The minimal configuration of
bacterial ABC transport system: an ATPase or ATP binding
subunit; An integral membrane protein; a hydrophilic
polypetpide, which likely functions as substrate binding
protein. Functionally, this transport system is involved
in osmoregulation. Under conditions of stress, the
organism recruits these transport system to accumulate
glycine betaine and other solutes which offer
osmo-protection. It has been demonstrated that glycine
betaine uptake is accompanied by symport with sodium
ions. The locus has been named variously as proU or
opuA. A gene library from L.lactis functionally
complements an E.coli proU mutant. The comlementing
locus is similar to a opuA locus in B.sutlis. This
clarifies the differences in nomenclature.
Length = 363
Score = 46.4 bits (110), Expect = 2e-05
Identities = 29/125 (23%), Positives = 56/125 (44%), Gaps = 2/125 (1%)
Query: 77 RNFSPSEQVAQVHQVKKFESGMVVNPVTISPYATLADALALMKKYSISGIPVVESDVGKL 136
F ++QV ++ M P+T + AL LM+ + + VV+ KL
Sbjct: 227 EEFIGKVDLSQVFDAERIAQRMNTGPITKTADKGPRSALQLMRDERVDSLYVVD-RQNKL 285
Query: 137 VGILTNRDVRFASNAQQAVGELMTRNLITVKKTVNLENAKALLHQHRIEKLLVVDDDGCC 196
VG++ ++ A Q + +++ ++ TV L + + I K+ VVD+D
Sbjct: 286 VGVVDVESIKQARKKAQGLQDVLIDDIYTVDAGTLLRETVRKVLKAGI-KVPVVDEDQRL 344
Query: 197 IGLIT 201
+G++T
Sbjct: 345 VGIVT 349
>gnl|CDD|162220 TIGR01137, cysta_beta, cystathionine beta-synthase. Members of
this family closely resemble cysteine synthase but
contain an additional C-terminal CBS domain. The
function of any bacterial member included in this family
is proposed but not proven.
Length = 454
Score = 45.9 bits (109), Expect = 2e-05
Identities = 33/131 (25%), Positives = 62/131 (47%), Gaps = 9/131 (6%)
Query: 80 SPSEQVAQVHQVKKFESGMVVNPVTISPYATLADALALMKKYSISGIPVVESDVGKLVGI 139
V V + + + PVT+ P T+ DA+ ++++Y +PVV GK++G
Sbjct: 323 DEVLTVFDVLKNATVKDLHLPAPVTVHPTETVGDAIEILREYGFDQLPVVTEA-GKVLGS 381
Query: 140 LTNR---DVRFASNAQ--QAVGELMTRNLITVKKTVNLENAKALLHQHRIEKLLVVDDDG 194
+T R FA A AV ++M++ I + + L + L ++ +V ++G
Sbjct: 382 VTLRELLSALFAGKANPDDAVSKVMSKKFIQIGEGEKLSDLSKFLEKN---SSAIVTEEG 438
Query: 195 CCIGLITVKDI 205
IG++T D+
Sbjct: 439 KPIGVVTKIDL 449
>gnl|CDD|183186 PRK11543, gutQ, D-arabinose 5-phosphate isomerase; Provisional.
Length = 321
Score = 42.8 bits (101), Expect = 2e-04
Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 4/88 (4%)
Query: 125 GIPVVESDVGKLVGILTNRDVRF----ASNAQQAVGELMTRNLITVKKTVNLENAKALLH 180
G+ V ++ G+ T+ D+R V E MTR T++ +AK +L
Sbjct: 231 GLVAVCDAQQQVQGVFTDGDLRRWLVGGGALTTPVNEAMTRGGTTLQAQSRAIDAKEILM 290
Query: 181 QHRIEKLLVVDDDGCCIGLITVKDIERS 208
+ +I VVD++G G I ++D ++
Sbjct: 291 KRKITAAPVVDENGKLTGAINLQDFYQA 318
>gnl|CDD|132195 TIGR03151, enACPred_II, putative enoyl-(acyl-carrier-protein)
reductase II. This oxidoreductase of the 2-nitropropane
dioxygenase family (pfam03060) is commonly found in
apparent operons with genes involved in fatty acid
biosynthesis. Furthermore, this genomic context
generally includes the fabG 3-oxoacyl-[ACP] reductase
and lacks the fabI enoyl-[ACP] reductase.
Length = 307
Score = 42.4 bits (100), Expect = 3e-04
Identities = 28/100 (28%), Positives = 46/100 (46%), Gaps = 7/100 (7%)
Query: 37 TRIAKDFTLNLPIMSAAMDQVTDSRLAIAMAQAGGLGVIHRNFSPSEQV-AQVHQVKKF- 94
TR+ + PI M V LA A++ AGGLG+I +P + V ++ +VK+
Sbjct: 2 TRLCDLLGIEYPIFQGGMAWVATGSLAAAVSNAGGLGIIGAGNAPPDVVRKEIRKVKELT 61
Query: 95 ESGMVVNPVTISPYATLADALALMKKYSISGIPVVESDVG 134
+ VN + +SP+ L+ +PVV + G
Sbjct: 62 DKPFGVNIMLLSPFVD-----ELVDLVIEEKVPVVTTGAG 96
>gnl|CDD|179231 PRK01130, PRK01130, N-acetylmannosamine-6-phosphate 2-epimerase;
Provisional.
Length = 221
Score = 41.3 bits (98), Expect = 5e-04
Identities = 29/115 (25%), Positives = 47/115 (40%), Gaps = 14/115 (12%)
Query: 262 LDAVVQIKKNFPSLLVMAGNIATAEGALALIDAGADIIKVGIGP---GSICTTRVVTGVG 318
L +V+ K +P L+MA + +T E LA G D IG G T+
Sbjct: 107 LAELVKRIKEYPGQLLMA-DCSTLEEGLAAQKLGFDF----IGTTLSGYTEETKKPEEPD 161
Query: 319 CPQLSAIMSVVEVAERAGVAIVADGGIRFSGDIAKAIAAGSACVMIGSLLAGTDE 373
L E+ + G ++A+G I KA+ G+ V++G + +E
Sbjct: 162 FALLK------ELLKAVGCPVIAEGRINTPEQAKKALELGAHAVVVGGAITRPEE 210
>gnl|CDD|129495 TIGR00400, mgtE, Mg2+ transporter (mgtE). This family of
prokaryotic proteins models a class of Mg++ transporter
first described in Bacillus firmus. May form a
homodimer.
Length = 449
Score = 38.7 bits (90), Expect = 0.004
Identities = 54/288 (18%), Positives = 116/288 (40%), Gaps = 39/288 (13%)
Query: 98 MVVNPVTISPYATLADALALMKKYSISGIPV----VESDVGKLVGILTNRDVRFASNAQQ 153
M + V + T+ AL +++ + + + V ++ L G+L+ RD+ A ++
Sbjct: 137 MTIEYVELKEDYTVGKALDYIRRVAKTKEDIYTLYVTNESKHLKGVLSIRDLILAKP-EE 195
Query: 154 AVGELMTRNLITVKKTVNLENAKALLHQHRIEKLLVVDDDGCCIGLITVKDIERSQLNPN 213
+ +M ++ ++ + E L+ ++ + VVD++G +G++TV DI +
Sbjct: 196 ILSSIMRSSVFSIVGVNDQEEVARLIQKYDFLAVPVVDNEGRLVGIVTVDDI-IDVIQSE 254
Query: 214 ATKDSKGRLRVAAAVSVAKDIA----------DRVGPLFDVNVDLVVVDTAHGHSQKVLD 263
AT+D + AAV D +R+ L + V T + + +L
Sbjct: 255 ATED----FYMIAAVKPLDDSYFDTSILVMAKNRIIWLLVLLVSSTFTATIISNYEDLLL 310
Query: 264 AVVQIKKNFPSLLVMAGNIATAEGALALIDAGADIIKVGIGPGSICTTRVVTGVGCPQ-- 321
++V + P L+ +GN + A+ + + +KV +V+ C
Sbjct: 311 SLVALANFIPLLMDTSGNAGSQSSAVVIRGLALETVKVKD------FFKVILREICVSIL 364
Query: 322 LSAIMSVVEVAERAGVAIVADGGIRFSGDIAKAIAAGSACVMIGSLLA 369
+ AI++ V + + F G + A S + + +A
Sbjct: 365 VGAILASV-------NFLRI---VFFQGKLLIAFVVSS-SLFVSLTVA 401
>gnl|CDD|182814 PRK10892, PRK10892, D-arabinose 5-phosphate isomerase; Provisional.
Length = 326
Score = 38.2 bits (89), Expect = 0.006
Identities = 31/110 (28%), Positives = 58/110 (52%), Gaps = 7/110 (6%)
Query: 104 TISPYATLADALALMKKYSISGIPVVESDVGKLVGILTNRDVR----FASNAQQA-VGEL 158
+S A+L DAL + + ++ G+ V+ D K+ GI T+ D+R + +QA + ++
Sbjct: 216 HVSKTASLRDALLEITRKNL-GMTVICDDNMKIEGIFTDGDLRRVFDMGIDLRQASIADV 274
Query: 159 MTRNLITVKKTVNLENAKALLHQHRIEKLLVVDDDGCCIGLITVKDIERS 208
MT I V+ + +A L+ I +LV D D +G++ + D+ R+
Sbjct: 275 MTPGGIRVRPGILAVDALNLMQSRHITSVLVADGDH-LLGVLHMHDLLRA 323
Score = 28.5 bits (64), Expect = 3.8
Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Query: 98 MVVNPVTISPYATLADALALMKKYSISGIPVVESDVGKLVGILTNRD 144
M + + P DAL LM+ I+ + V + D L+G+L D
Sbjct: 275 MTPGGIRVRPGILAVDALNLMQSRHITSVLVADGD--HLLGVLHMHD 319
>gnl|CDD|162241 TIGR01182, eda, Entner-Doudoroff aldolase.
2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14)
is an enzyme of the Entner-Doudoroff pathway. This
aldolase has another function, 4-hydroxy-2-oxoglutarate
aldolase (EC 4.1.3.16) shown experimentally in
Escherichia coli and Pseudomonas putida.
Length = 204
Score = 37.3 bits (87), Expect = 0.008
Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 8/73 (10%)
Query: 262 LDAVVQIKKNFPSLLVMAGNIATAEGALALIDAGADIIKVGIGPGSICTTRVVT---GVG 318
LDA+ ++K P L+ AG + E +DAGA I + PG T + G
Sbjct: 47 LDAIRLLRKEVPDALIGAGTVLNPEQLRQAVDAGAQFI---VSPG--LTPELAKHAQDHG 101
Query: 319 CPQLSAIMSVVEV 331
P + + + E+
Sbjct: 102 IPIIPGVATPSEI 114
>gnl|CDD|183033 PRK11197, lldD, L-lactate dehydrogenase; Provisional.
Length = 381
Score = 37.3 bits (87), Expect = 0.009
Identities = 29/96 (30%), Positives = 44/96 (45%), Gaps = 20/96 (20%)
Query: 276 LVMAGNIATAEGALALIDAGADIIKVGIGPGSICTTRVVTGVGCPQLSAIMSVVE----V 331
+V+ G I E A + GAD GI VV+ G QL ++S +
Sbjct: 248 MVIKG-ILDPEDARDAVRFGAD----GI---------VVSNHGGRQLDGVLSSARALPAI 293
Query: 332 AERAG--VAIVADGGIRFSGDIAKAIAAGSACVMIG 365
A+ + I+AD GIR D+ + IA G+ V++G
Sbjct: 294 ADAVKGDITILADSGIRNGLDVVRMIALGADTVLLG 329
>gnl|CDD|178150 PLN02535, PLN02535, glycolate oxidase.
Length = 364
Score = 36.4 bits (84), Expect = 0.017
Identities = 27/102 (26%), Positives = 48/102 (47%), Gaps = 19/102 (18%)
Query: 270 KNFPSLLVMAGNIATAEGALALIDAGADIIKVGIGPGSICTTRVVTGVGCPQLS---AIM 326
++ +L ++ + T E A+ ++ G I +V+ G QL A +
Sbjct: 219 RSITNLPILIKGVLTREDAIKAVEVGVAGI-------------IVSNHGARQLDYSPATI 265
Query: 327 SVVE---VAERAGVAIVADGGIRFSGDIAKAIAAGSACVMIG 365
SV+E A V ++ DGG+R D+ KA+A G+ V++G
Sbjct: 266 SVLEEVVQAVGGRVPVLLDGGVRRGTDVFKALALGAQAVLVG 307
>gnl|CDD|180220 PRK05718, PRK05718,
keto-hydroxyglutarate-aldolase/keto-deoxy-
phosphogluconate aldolase; Provisional.
Length = 212
Score = 35.2 bits (82), Expect = 0.041
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
Query: 262 LDAVVQIKKNFPSLLVMAGNIATAEGALALIDAGADIIKVGIGPGS 307
L+A+ I K P L+ AG + E I+AGA I + PG
Sbjct: 54 LEAIRLIAKEVPEALIGAGTVLNPEQLAQAIEAGAQFI---VSPGL 96
>gnl|CDD|178989 PRK00366, ispG, 4-hydroxy-3-methylbut-2-en-1-yl diphosphate
synthase; Reviewed.
Length = 360
Score = 35.0 bits (82), Expect = 0.041
Identities = 21/84 (25%), Positives = 34/84 (40%), Gaps = 19/84 (22%)
Query: 282 IATAEGALALIDAGADIIKVGIGPGSICTTRVVTGVGCPQLSAIMSVVEVAERAGVAIVA 341
AT L AG +I++ V P + A ++ E+ ++ V +VA
Sbjct: 42 EATVAQIKRLARAGCEIVR----------------VAVPDMEAAAALPEIKKQLPVPLVA 85
Query: 342 DGGIRFSGDIA-KAIAAGSACVMI 364
D I F +A A AG+ + I
Sbjct: 86 D--IHFDYRLALAAAEAGADALRI 107
>gnl|CDD|180081 PRK05437, PRK05437, isopentenyl pyrophosphate isomerase;
Provisional.
Length = 352
Score = 35.1 bits (82), Expect = 0.043
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 6/53 (11%)
Query: 327 SVVEVAE-RAGVAIVADGGIRFSGDIAKAIA-----AGSACVMIGSLLAGTDE 373
S++E + I+A GGIR DIAKA+A G A + + L G +E
Sbjct: 251 SLLEARSLLPDLPIIASGGIRNGLDIAKALALGADAVGMAGPFLKAALEGGEE 303
>gnl|CDD|131755 TIGR02708, L_lactate_ox, L-lactate oxidase. Members of this
protein oxidize L-lactate to pyruvate, reducing
molecular oxygen to hydrogen peroxide. The enzyme is
known in Aerococcus viridans, Streptococcus iniae, and
some strains of Streptococcus pyogenes where it appears
to contribute to virulence.
Length = 367
Score = 34.5 bits (79), Expect = 0.063
Identities = 44/161 (27%), Positives = 64/161 (39%), Gaps = 30/161 (18%)
Query: 222 LRVAAAVSVAKDIADRVGPLFDVNVDLV--VVDTAHGHS---------QKVLDAVVQIKK 270
L A V +++ R G +F V + +V + T G S QK+ ++
Sbjct: 165 LTADATVGGNREVDVRNGFVFPVGMPIVQEYLPTGAGKSMDNVYKSAKQKLSPRDIEEIA 224
Query: 271 NFPSLLVMAGNIATAEGALALIDAGADIIKVGIGPGSICTTRVVTGVGCPQL----SAIM 326
+ L V E A + AGA I VT G QL +A
Sbjct: 225 GYSGLPVYVKGPQCPEDADRALKAGASGI-------------WVTNHGGRQLDGGPAAFD 271
Query: 327 SVVEVAERAG--VAIVADGGIRFSGDIAKAIAAGSACVMIG 365
S+ EVAE V IV D G+R + KA+A+G+ V +G
Sbjct: 272 SLQEVAEAVDKRVPIVFDSGVRRGQHVFKALASGADLVALG 312
>gnl|CDD|162733 TIGR02151, IPP_isom_2, isopentenyl-diphosphate delta-isomerase,
type 2. Isopentenyl-diphosphate delta-isomerase (IPP
isomerase) interconverts isopentenyl diphosphate and
dimethylallyl diphosphate. This model represents the
type 2 enzyme. FMN, NADPH, and Mg2+ are required by this
form, which lacks homology to the type 1 enzyme
(TIGR02150). IPP is precursor to many compounds,
including enzyme cofactors, sterols, and isoprenoids.
Length = 333
Score = 33.8 bits (78), Expect = 0.11
Identities = 35/124 (28%), Positives = 51/124 (41%), Gaps = 19/124 (15%)
Query: 261 VLDAVVQIKK--NFPSLLVMAGNIATAEGALALIDAGADIIKVGIGPGSICTTRVVTGV- 317
L+ + +I + P ++ G + E A L DAG I V G G +V
Sbjct: 167 WLEKIAEICSQLSVPVIVKEVGFGISKEVAKLLADAGVSAIDVA-GAGGTSWAQVENYRA 225
Query: 318 ------------GCPQLSAIMSVVEVAERAGVAIVADGGIRFSGDIAKAIAAGSACV-MI 364
G P ++++ V A A I+A GG+R D+AKAIA G+ V M
Sbjct: 226 KGSNLASFFNDWGIPTAASLLEVRSDAPDA--PIIASGGLRTGLDVAKAIALGADAVGMA 283
Query: 365 GSLL 368
L
Sbjct: 284 RPFL 287
>gnl|CDD|181670 PRK09140, PRK09140, 2-dehydro-3-deoxy-6-phosphogalactonate
aldolase; Reviewed.
Length = 206
Score = 33.6 bits (78), Expect = 0.12
Identities = 28/94 (29%), Positives = 46/94 (48%), Gaps = 16/94 (17%)
Query: 275 LLVMAGNIATAEGALALIDAGADIIKVGIGPGSICTTRVVTGVGCPQLSAIMSVVEVAER 334
++VM G +AT A A + AGA +K + P S +G + A+ +V+
Sbjct: 105 MVVMPG-VATPTEAFAALRAGAQALK--LFPASQ--------LGPAGIKALRAVLP---- 149
Query: 335 AGVAIVADGGIRFSGDIAKAIAAGSACVMIGSLL 368
V + A GG+ ++A +AAG+A +GS L
Sbjct: 150 PDVPVFAVGGVT-PENLAPYLAAGAAGFGLGSAL 182
>gnl|CDD|130109 TIGR01037, pyrD_sub1_fam, dihydroorotate dehydrogenase (subfamily
1) family protein. This family includes subfamily 1
dihydroorotate dehydrogenases while excluding the
closely related subfamily 2 (TIGR01036). This family
also includes a number of uncharacterized proteins and a
domain of dihydropyrimidine dehydrogenase. The
uncharacterized proteins might all be dihydroorotate
dehydrogenase.
Length = 300
Score = 32.4 bits (74), Expect = 0.27
Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 11/92 (11%)
Query: 286 EGALALIDAGADII---------KVGIGPGSICTTRVVTGVGCPQLS--AIMSVVEVAER 334
E A A +AGAD + K+ I G G+ P + A+ V +V +
Sbjct: 173 EIAKAAEEAGADGLTLINTLRGMKIDIKTGKPILANKTGGLSGPAIKPIALRMVYDVYKM 232
Query: 335 AGVAIVADGGIRFSGDIAKAIAAGSACVMIGS 366
+ I+ GGI D + + AG++ V +G+
Sbjct: 233 VDIPIIGVGGITSFEDALEFLMAGASAVQVGT 264
>gnl|CDD|132172 TIGR03128, RuMP_HxlA, 3-hexulose-6-phosphate synthase. at the cost
of also yielding formaldehyde. These latter species tend
usually have a formaldehyde-activating enzyme to attach
formaldehyde to the C1 carrier tetrahydromethanopterin.
In these species, the enzyme is viewed as a lyase rather
than a synthase and is called D-arabino 3-hexulose
6-phosphate formaldehyde lyase. Note that there is some
overlap in specificity with the Escherichia coli enzyme
3-keto-L-gulonate 6-phosphate decarboxylase.
Length = 206
Score = 32.0 bits (73), Expect = 0.36
Identities = 21/85 (24%), Positives = 37/85 (43%), Gaps = 20/85 (23%)
Query: 262 LDAVVQIKKNFPSLLVMAGNIATAEG----ALALIDAGADIIKVGIGPGSICTTRVVTGV 317
++AV ++K+ FP V+A ++ T + A AGADI+ V +
Sbjct: 40 IEAVKEMKEAFPDRKVLA-DLKTMDAGEYEAEQAFAAGADIVTV---------------L 83
Query: 318 GCPQLSAIMSVVEVAERAGVAIVAD 342
G + I V+ A++ G + D
Sbjct: 84 GVADDATIKGAVKAAKKHGKEVQVD 108
>gnl|CDD|132479 TIGR03438, TIGR03438, probable methyltransferase. This model
represents a distinct set of uncharacterized proteins
found in the bacteria. Analysis by PSI-BLAST shows
remote sequence homology to methyltransferases.
Length = 301
Score = 31.8 bits (73), Expect = 0.39
Identities = 23/100 (23%), Positives = 33/100 (33%), Gaps = 30/100 (30%)
Query: 231 AKDIADRVGPLFDVNVDLVVVDTAHGHSQKV---LDA--------------------VVQ 267
A +IA G +V+ G S+K LDA
Sbjct: 54 ADEIAAATGA------GCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAA 107
Query: 268 IKKNFPSLLVMAGNIATAEGALALIDAGADIIKVGIGPGS 307
+ ++P L + G A LAL A ++G PGS
Sbjct: 108 LAADYPQL-EVHGICADFTQPLALPPEPAAGRRLGFFPGS 146
>gnl|CDD|169939 PRK09517, PRK09517, multifunctional thiamine-phosphate
pyrophosphorylase/synthase/phosphomethylpyrimidine
kinase; Provisional.
Length = 755
Score = 31.9 bits (72), Expect = 0.43
Identities = 38/150 (25%), Positives = 63/150 (42%), Gaps = 14/150 (9%)
Query: 224 VAAAVSVAKDIADRVG-PLF-DVNVDLVVVDTAHGHSQKVLDAVVQIKKNFPSLLVMAGN 281
V AA K++ D G L + +D+ V H H + Q ++ P+ L +
Sbjct: 48 VRAAAKELKELCDARGVALVVNDRLDVAVELGLHVHIGQGDTPYTQARRLLPAHLELGLT 107
Query: 282 IATAEGALALID--AGADIIKV---GIGPGSICTTR--VVTGVGCPQLSAIMSVVEVAER 334
I T + A+I A + GIGP + T+ +G ++ I +V A+
Sbjct: 108 IETLDQLEAVIAQCAETGVALPDVIGIGPVASTATKPDAPPALGVDGIAEIAAV---AQD 164
Query: 335 AGVAIVADGGI--RFSGDIAKAIAAGSACV 362
G+A VA GG+ R + ++A G V
Sbjct: 165 HGIASVAIGGVGLRNAAELAATGIDGLCVV 194
>gnl|CDD|185050 PRK15094, PRK15094, magnesium/cobalt efflux protein CorC;
Provisional.
Length = 292
Score = 31.7 bits (72), Expect = 0.49
Identities = 25/105 (23%), Positives = 51/105 (48%), Gaps = 2/105 (1%)
Query: 103 VTISPYATLADALALMKKYSISGIPVVESDVGKLVGILTNRDVR--FASNAQQAVGELMT 160
+T+ TL + L ++ + + S PV+ D + GIL +D+ S+A+ + +
Sbjct: 80 ITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMRSDAEAFSMDKVL 139
Query: 161 RNLITVKKTVNLENAKALLHQHRIEKLLVVDDDGCCIGLITVKDI 205
R + V ++ ++ R +V+D+ G GL+T++DI
Sbjct: 140 RQAVVVPESKRVDRMLKEFRSQRYHMAIVIDEFGGVSGLVTIEDI 184
>gnl|CDD|161958 TIGR00612, ispG_gcpE, 1-hydroxy-2-methyl-2-(E)-butenyl
4-diphosphate synthase. Chlamydial members of the
family have a long insert. The family is largely
restricted to Bacteria, where it is widely but not
universally distributed. No homology can be detected
between the GcpE family and other proteins.
Length = 346
Score = 30.1 bits (68), Expect = 1.4
Identities = 26/97 (26%), Positives = 36/97 (37%), Gaps = 19/97 (19%)
Query: 283 ATAEGALALIDAGADIIKVGIGPGSICTTRVVTGVGCPQLSAIMSVVEVAERAGVAIVAD 342
+T AL +AG DI++ V P + + + E V +VAD
Sbjct: 35 STVAQIRALEEAGCDIVR----------------VTVPDRESAAAFEAIKEGTNVPLVAD 78
Query: 343 GGIRFSGD-IAKAIAAGSACVMIGSLLAGTDESPGDI 378
I F A A+A G A V I G E D+
Sbjct: 79 --IHFDYRLAALAMAKGVAKVRINPGNIGFRERVRDV 113
>gnl|CDD|179050 PRK00507, PRK00507, deoxyribose-phosphate aldolase; Provisional.
Length = 221
Score = 29.8 bits (68), Expect = 1.7
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 278 MAGNIATAEGALALIDAGAD 297
+G I T E ALA+I+AGA
Sbjct: 184 ASGGIRTLEDALAMIEAGAT 203
>gnl|CDD|166018 PLN02377, PLN02377, 3-ketoacyl-CoA synthase.
Length = 502
Score = 29.2 bits (65), Expect = 2.3
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 5/57 (8%)
Query: 160 TRNLITVKKTVNLENAKALLHQHRIEKLLVVDDDGCCIGLITVKDIERSQLNPNATK 216
TR L ++VNL+ K L + + I LL + C I LI + IE SQ+NP+ +
Sbjct: 12 TRMLPDFLQSVNLKYVK-LGYHYLISNLLTL----CFIPLIIIISIEASQMNPDDLR 63
>gnl|CDD|161661 TIGR00007, TIGR00007, phosphoribosylformimino-5-aminoimidazole
carboxamide ribotide isomerase. Examples of this enzyme
in Actinobacteria have been found to be bifunctional,
also possessing phosphoribosylanthranilate isomerase
activity ; the trusted cutoff here has now been raised
to 275.0 to exclude the bifunctional group, now
represented by model TIGR01919. HisA from Lactococcus
lactis was reported to be inactive (MEDLINE:93322317).
Length = 230
Score = 29.1 bits (66), Expect = 3.0
Identities = 10/41 (24%), Positives = 18/41 (43%)
Query: 328 VVEVAERAGVAIVADGGIRFSGDIAKAIAAGSACVMIGSLL 368
E+ + V ++A GG+ D+ G V++G L
Sbjct: 181 TKELVKAVNVPVIASGGVSSIDDLIALKKLGVYGVIVGKAL 221
>gnl|CDD|183865 PRK13111, trpA, tryptophan synthase subunit alpha; Provisional.
Length = 258
Score = 28.9 bits (66), Expect = 3.3
Identities = 13/30 (43%), Positives = 21/30 (70%), Gaps = 3/30 (10%)
Query: 277 VMAG--NI-ATAEGALALIDAGADIIKVGI 303
+ AG ++ + E AL++AGADII++GI
Sbjct: 18 ITAGDPDLETSLEIIKALVEAGADIIELGI 47
>gnl|CDD|184165 PRK13585, PRK13585,
1-(5-phosphoribosyl)-5-[(5-
phosphoribosylamino)methylideneamino]
imidazole-4-carboxamide isomerase; Provisional.
Length = 241
Score = 28.7 bits (65), Expect = 3.5
Identities = 17/55 (30%), Positives = 30/55 (54%)
Query: 248 LVVVDTAHGHSQKVLDAVVQIKKNFPSLLVMAGNIATAEGALALIDAGADIIKVG 302
LV +D A +K +A+ +I + + + G I +AE A +L+D G D + +G
Sbjct: 51 LVDLDGAFEGERKNAEAIEKIIEAVGVPVQLGGGIRSAEDAASLLDLGVDRVILG 105
Score = 27.9 bits (63), Expect = 6.0
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 7/69 (10%)
Query: 303 IGPGSICTTRV-VTGVGCPQLSAIMS--VVEVAERAGVAIVADGGIRFSGDIAKAIAAGS 359
+G GSI T V V G L + + V E+ + + ++A GG+ D+ AG+
Sbjct: 161 LGAGSILFTNVDVEG----LLEGVNTEPVKELVDSVDIPVIASGGVTTLDDLRALKEAGA 216
Query: 360 ACVMIGSLL 368
A V++GS L
Sbjct: 217 AGVVVGSAL 225
>gnl|CDD|182933 PRK11057, PRK11057, ATP-dependent DNA helicase RecQ; Provisional.
Length = 607
Score = 28.5 bits (64), Expect = 3.6
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 7/54 (12%)
Query: 241 LFDVNVDLVVVDTAHGHSQKVLD------AVVQIKKNFPSLLVMAGNIATAEGA 288
L N L+ VD AH SQ D A+ Q+++ FP+L MA ATA+
Sbjct: 135 LAHWNPALLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALT-ATADDT 187
>gnl|CDD|181755 PRK09283, PRK09283, delta-aminolevulinic acid dehydratase;
Validated.
Length = 323
Score = 28.5 bits (65), Expect = 4.0
Identities = 18/61 (29%), Positives = 25/61 (40%), Gaps = 25/61 (40%)
Query: 264 AVVQIKKNFPSLLVMA------------------GNI---AT----AEGALALIDAGADI 298
A+ IKK FP L V+ G + T A+ AL+ +AGADI
Sbjct: 102 AIRAIKKAFPELGVITDVCLDEYTSHGHCGILEDGYVDNDETLELLAKQALSQAEAGADI 161
Query: 299 I 299
+
Sbjct: 162 V 162
>gnl|CDD|130830 TIGR01769, GGGP, geranylgeranylglyceryl phosphate synthase. This
model represents geranylgeranylglyceryl phosphate
synthase which catalyzes the first committed step in the
synthesis of ether-linked membrane lipids in archaea.
The active enzyme is reported to be a homopentamer in
Methanobacterium thermoautotrophicum but is reported to
be a homodimer in Thermoplasma acidophilum.
Length = 205
Score = 28.6 bits (64), Expect = 4.0
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 263 DAVVQIKKNFPSLLVMAGNIATAEGALALIDAGADIIKVG 302
+ + +KK L++ G I + E A ++ AGAD I G
Sbjct: 166 ETISLVKKASGIPLIVGGGIRSPEIAYEIVLAGADAIVTG 205
>gnl|CDD|178042 PLN02422, PLN02422, dephospho-CoA kinase.
Length = 232
Score = 28.6 bits (64), Expect = 4.1
Identities = 20/92 (21%), Positives = 40/92 (43%), Gaps = 5/92 (5%)
Query: 107 PYATLADALALMKKYSISGIPVVESDVGKLVGI----LTNRDVRFASNAQQAVGELMTRN 162
PY + ++K + + G V+ D+ L T V + + + LM R+
Sbjct: 89 PYISSGIFWEILKLW-LKGCKVIVLDIPLLFETKMDKWTKPVVVVWVDPETQLERLMARD 147
Query: 163 LITVKKTVNLENAKALLHQHRIEKLLVVDDDG 194
++ ++ N NA+ L R + +V+D+ G
Sbjct: 148 GLSEEQARNRINAQMPLDWKRSKADIVIDNSG 179
>gnl|CDD|179992 PRK05286, PRK05286, dihydroorotate dehydrogenase 2; Reviewed.
Length = 344
Score = 28.2 bits (64), Expect = 4.4
Identities = 10/33 (30%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 267 QIKKNFPSLLVMAGNIATAEGALALIDAGADII 299
++ P ++ G I +AE A I AGA ++
Sbjct: 285 ELGGRLP--IIGVGGIDSAEDAYEKIRAGASLV 315
>gnl|CDD|179344 PRK01862, PRK01862, putative voltage-gated ClC-type chloride
channel ClcB; Provisional.
Length = 574
Score = 28.2 bits (63), Expect = 4.8
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
Query: 161 RNLITVKKTV-----NLENAKALLHQHRIEKLLVVDDDGCCIGLITVKDIERSQLNPNAT 215
R LI +TV ++ + + ++ ++ L VVDDDG G + +KDI L+ T
Sbjct: 450 RELIQPAQTVVPPTASVADMTRVFLEYPVKYLYVVDDDGRFRGAVALKDITSDLLDKRDT 509
Query: 216 KD 217
D
Sbjct: 510 TD 511
>gnl|CDD|179762 PRK04169, PRK04169, geranylgeranylglyceryl phosphate synthase-like
protein; Reviewed.
Length = 232
Score = 27.9 bits (63), Expect = 5.6
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 276 LVMAGNIATAEGALALIDAGADIIKVG 302
L+ G I + E A L+ AGAD I VG
Sbjct: 187 LIYGGGIRSPEQARELMAAGADTIVVG 213
>gnl|CDD|179386 PRK02227, PRK02227, hypothetical protein; Provisional.
Length = 238
Score = 28.0 bits (63), Expect = 5.9
Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Query: 279 AGNIATAEGALALIDAGADIIKVGIGPGS 307
G I+ A AL GAD +KVG+ G
Sbjct: 66 PGTISLA--ALGAAATGADYVKVGLYGGK 92
>gnl|CDD|129155 TIGR00044, TIGR00044, pyridoxal phosphate enzyme, YggS family.
Members of this protein family include YggS from
Escherichia coli and YBL036C, an uncharacterized
pyridoxal protein of Saccharomyces cerevisiae.
Length = 229
Score = 27.9 bits (62), Expect = 5.9
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 348 SGDIAKAIAAGSACVMIGSLLAG 370
S D +AIAAG+ V IG+ + G
Sbjct: 205 SDDFEEAIAAGATMVRIGTAIFG 227
>gnl|CDD|181033 PRK07565, PRK07565, dihydroorotate dehydrogenase 2; Reviewed.
Length = 334
Score = 27.9 bits (63), Expect = 7.0
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 334 RAGVAIVADGGIRFSGDIAKAIAAGSACVMIGSLL 368
R G + A G+ + D+ K + AG+ VMI S L
Sbjct: 237 RVGADLAATTGVHDAEDVIKMLLAGADVVMIASAL 271
>gnl|CDD|181722 PRK09243, PRK09243, nicotinate phosphoribosyltransferase;
Validated.
Length = 464
Score = 27.8 bits (63), Expect = 7.1
Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 10/65 (15%)
Query: 290 ALIDAGADIIKVGIGPGSICTTRVVTGVGCPQLSAIMSVVEVAERAGVAIVADGGIRFSG 349
+L GA I G+G T++VTG P L + +V + G+ I+ S
Sbjct: 302 SLKLQGAPIDGFGVG------TKLVTGSDAPALGGVYKLVAIEGEGGMIPK----IKLSN 351
Query: 350 DIAKA 354
K
Sbjct: 352 SPEKV 356
>gnl|CDD|161723 TIGR00126, deoC, deoxyribose-phosphate aldolase.
Deoxyribose-phosphate aldolase is involved in the
catabolism of nucleotides and deoxyriibonucleotides. The
catalytic process is as follows: 2-deoxy-D-ribose
5-phosphate = D-glyceraldehyde 3-phosphate +
acetaldehyde. It is found in both gram-postive and
gram-negative bacteria.
Length = 211
Score = 27.4 bits (61), Expect = 9.6
Identities = 11/21 (52%), Positives = 16/21 (76%)
Query: 279 AGNIATAEGALALIDAGADII 299
+G + TAE A+A+I+AGA I
Sbjct: 181 SGGVRTAEDAIAMIEAGASRI 201
>gnl|CDD|162523 TIGR01768, GGGP-family, geranylgeranylglyceryl phosphate synthase
family protein. This model represents a family of
sequences including geranylgeranylglyceryl phosphate
synthase which catalyzes the first committed step in the
synthesis of ether-linked membrane lipids in archaea.
The clade of bacterial sequences may have the same
function or a closely related function. This model
supercedes TIGR00265, which has been retired.
Length = 223
Score = 27.1 bits (60), Expect = 9.8
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 263 DAVVQIKKNFPS-LLVMAGNIATAEGALALIDAGADIIKVG 302
+ V ++KK L + G I + E A + +AGAD I G
Sbjct: 168 ELVAEVKKVLDKARLFVGGGIRSVEKAREMAEAGADTIVTG 208
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.318 0.134 0.371
Gapped
Lambda K H
0.267 0.0803 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 7,947,027
Number of extensions: 535750
Number of successful extensions: 1553
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1488
Number of HSP's successfully gapped: 115
Length of query: 493
Length of database: 5,994,473
Length adjustment: 97
Effective length of query: 396
Effective length of database: 3,898,497
Effective search space: 1543804812
Effective search space used: 1543804812
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.4 bits)