RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254780889|ref|YP_003065302.1| inosine 5'-monophosphate dehydrogenase [Candidatus Liberibacter asiaticus str. psy62] (493 letters) >gnl|CDD|180134 PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed. Length = 486 Score = 822 bits (2126), Expect = 0.0 Identities = 296/491 (60%), Positives = 385/491 (78%), Gaps = 8/491 (1%) Query: 1 MARIIENNVGGVALTFDDVLLRPEFSNVLPRDIDISTRIAKDFTLNLPIMSAAMDQVTDS 60 M RI + ALTFDDVLL P S VLP D+D+ST++ K+ LN+P++SAAMD VT++ Sbjct: 1 MLRIAK-----EALTFDDVLLVPAHSEVLPNDVDLSTQLTKNIRLNIPLLSAAMDTVTEA 55 Query: 61 RLAIAMAQAGGLGVIHRNFSPSEQVAQVHQVKKFESGMVVNPVTISPYATLADALALMKK 120 R+AIAMA+ GG+GVIH+N S EQ +V +VK+ ESG+V +PVT++P TLA+ALALM + Sbjct: 56 RMAIAMAREGGIGVIHKNMSIEEQAEEVRKVKRSESGVVTDPVTVTPDTTLAEALALMAR 115 Query: 121 YSISGIPVVESDVGKLVGILTNRDVRFASNAQQAVGELMTR-NLITVKKTVNLENAKALL 179 Y ISG+PVV+ + GKLVGI+TNRDVRF ++ Q V E+MT+ L+TV + LE A LL Sbjct: 116 YGISGVPVVDEN-GKLVGIITNRDVRFETDLSQPVSEVMTKERLVTVPEGTTLEEALELL 174 Query: 180 HQHRIEKLLVVDDDGCCIGLITVKDIERSQLNPNATKDSKGRLRVAAAVSVAKDIADRVG 239 H+HRIEKL VVDD+G GLITVKDIE+++ PNA KD +GRLRV AAV V D +R Sbjct: 175 HEHRIEKLPVVDDNGRLKGLITVKDIEKAEEFPNACKDEQGRLRVGAAVGVGADNEERAE 234 Query: 240 PLFDVNVDLVVVDTAHGHSQKVLDAVVQIKKNFPSLLVMAGNIATAEGALALIDAGADII 299 L + VD++VVDTAHGHS+ VLD V +IK +P + ++AGN+ATAE A ALI+AGAD + Sbjct: 235 ALVEAGVDVLVVDTAHGHSEGVLDRVREIKAKYPDVQIIAGNVATAEAARALIEAGADAV 294 Query: 300 KVGIGPGSICTTRVVTGVGCPQLSAIMSVVEVAERAGVAIVADGGIRFSGDIAKAIAAGS 359 KVGIGPGSICTTR+V GVG PQ++AI E A++ G+ ++ADGGIR+SGDIAKA+AAG+ Sbjct: 295 KVGIGPGSICTTRIVAGVGVPQITAIADAAEAAKKYGIPVIADGGIRYSGDIAKALAAGA 354 Query: 360 ACVMIGSLLAGTDESPGDIFLYQGRSFKSYRGMGSVAAMERGSSARYSQDGVTDVLKLVP 419 + VM+GS+LAGT+E+PG++ LYQGRS+KSYRGMGS+ AM +GSS RY Q V KLVP Sbjct: 355 SAVMLGSMLAGTEEAPGEVELYQGRSYKSYRGMGSLGAMSKGSSDRYFQS-VNAADKLVP 413 Query: 420 EGIEGRVPYKGPIASVLHQMSGGLKSSMGYVGASNIEEFQKKANFIRVSVAGLRESHVHD 479 EGIEGRVPYKGP++ ++HQ+ GGL+S MGY GA+ IEE ++KA F+R++ AGLRESHVHD Sbjct: 414 EGIEGRVPYKGPLSEIIHQLMGGLRSGMGYTGAATIEELREKAEFVRITGAGLRESHVHD 473 Query: 480 VKITRESPNYS 490 V+IT+E+PNY Sbjct: 474 VQITKEAPNYR 484 >gnl|CDD|162293 TIGR01302, IMP_dehydrog, inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models. Length = 450 Score = 611 bits (1577), Expect = e-175 Identities = 252/449 (56%), Positives = 332/449 (73%), Gaps = 4/449 (0%) Query: 13 ALTFDDVLLRPEFSNVLPRDIDISTRIAKDFTLNLPIMSAAMDQVTDSRLAIAMAQAGGL 72 LTFDDVLL P F +V P D+D+STRI ++ LN+PI+S+ MD VT+SR+AIAMA+ GG+ Sbjct: 1 GLTFDDVLLLPGFIDVEPDDVDLSTRITRNIKLNIPILSSPMDTVTESRMAIAMAREGGI 60 Query: 73 GVIHRNFSPSEQVAQVHQVKKFESGMVVNPVTISPYATLADALALMKKYSISGIPVVESD 132 GVIHRN S EQ QV +VK+ E+G++ +PVTISP T+AD L LM++ ISGIPVVE Sbjct: 61 GVIHRNMSIEEQAEQVKRVKRAENGIISDPVTISPETTVADVLELMERKGISGIPVVEDG 120 Query: 133 --VGKLVGILTNRDVRFASNAQQAVGELMTR-NLITVKKTVNLENAKALLHQHRIEKLLV 189 GKLVGI+T RD+RF + + V E+MTR +ITV + ++LE A +LH+HRIEKL V Sbjct: 121 DMTGKLVGIITKRDIRFVKDKGKPVSEVMTREEVITVPEGIDLEEALKVLHEHRIEKLPV 180 Query: 190 VDDDGCCIGLITVKDIERSQLNPNATKDSKGRLRVAAAVSVAKDIADRVGPLFDVNVDLV 249 VD +G +GLIT+KDI + + P+A+KD GRL V AAV + +R L VD++ Sbjct: 181 VDKNGELVGLITMKDIVKRRKFPHASKDENGRLIVGAAVGTREFDKERAEALVKAGVDVI 240 Query: 250 VVDTAHGHSQKVLDAVVQIKKNFPSLLVMAGNIATAEGALALIDAGADIIKVGIGPGSIC 309 V+D++HGHS V+D++ +IKK +P L ++AGN+ATAE A ALIDAGAD ++VGIGPGSIC Sbjct: 241 VIDSSHGHSIYVIDSIKEIKKTYPDLDIIAGNVATAEQAKALIDAGADGLRVGIGPGSIC 300 Query: 310 TTRVVTGVGCPQLSAIMSVVEVAERAGVAIVADGGIRFSGDIAKAIAAGSACVMIGSLLA 369 TTR+V GVG PQ++A+ V E A ++G+ ++ADGGIR+SGDI KA+AAG+ VM+GSLLA Sbjct: 301 TTRIVAGVGVPQITAVYDVAEYAAQSGIPVIADGGIRYSGDIVKALAAGADAVMLGSLLA 360 Query: 370 GTDESPGDIFLYQGRSFKSYRGMGSVAAMERGSSARYSQDGVTDVLKLVPEGIEGRVPYK 429 GT ESPG+ + GR +K YRGMGS+ AM +GSS RY QD K VPEG+EG VPYK Sbjct: 361 GTTESPGEYEIINGRRYKQYRGMGSLGAMTKGSSDRYLQDENKT-KKFVPEGVEGAVPYK 419 Query: 430 GPIASVLHQMSGGLKSSMGYVGASNIEEF 458 G + +L Q+ GGLKS MGYVGA +I+E Sbjct: 420 GSVLELLPQLVGGLKSGMGYVGARSIDEL 448 >gnl|CDD|185550 PTZ00314, PTZ00314, inosine-5'-monophosphate dehydrogenase; Provisional. Length = 495 Score = 503 bits (1297), Expect = e-143 Identities = 196/479 (40%), Positives = 298/479 (62%), Gaps = 13/479 (2%) Query: 12 VALTFDDVLLRPEFSNVLPRDIDISTRIAKDFTLNLPIMSAAMDQVTDSRLAIAMAQAGG 71 LT+DDV+L P + + D+D+STR+ ++ L +PI+S+ MD VT+ ++AIAMA GG Sbjct: 16 TGLTYDDVILLPGYIDFSRDDVDLSTRLTRNIRLKIPIVSSPMDTVTEHKMAIAMALMGG 75 Query: 72 LGVIHRNFSPSEQVAQVHQVKKFESGMVVNPVTISPYATLADALALMKKYSISGIPVVES 131 +GVIH N S EQV +V +VK+FE+G +++P +SP T+AD L + +K S I + Sbjct: 76 IGVIHNNCSIEEQVEEVRKVKRFENGFIMDPYVLSPNHTVADVLEIKEKKGFSSILITVD 135 Query: 132 DV--GKLVGILTNRDVRFASNAQQAVGELMTR--NLITVKKTVNLENAKALLHQHRIEKL 187 GKL+GI+T+RD+ F + V E+MT L+ ++LE A +L + R KL Sbjct: 136 GKVGGKLLGIVTSRDIDFVKDKSTPVSEVMTPREKLVVGNTPISLEEANEVLRESRKGKL 195 Query: 188 LVVDDDGCCIGLITVKDIERSQLNPNATKDSKGRLRVAAAVSVAKDIADRVGPLFDVNVD 247 +V+D+G + L++ D+++++ PNA+ DS G+L V AA+S + +R L + VD Sbjct: 196 PIVNDNGELVALVSRSDLKKNRGYPNASLDSNGQLLVGAAISTRPEDIERAAALIEAGVD 255 Query: 248 LVVVDTAHGHSQKVLDAVVQIKKNFPSLLVMAGNIATAEGALALIDAGADIIKVGIGPGS 307 ++VVD++ G+S +D + ++K N+P + ++AGN+ TA+ A LIDAGAD +++G+G GS Sbjct: 256 VLVVDSSQGNSIYQIDMIKKLKSNYPHVDIIAGNVVTADQAKNLIDAGADGLRIGMGSGS 315 Query: 308 ICTTRVVTGVGCPQLSAIMSVVEVAERAGVAIVADGGIRFSGDIAKAIAAGSACVMIGSL 367 IC T+ V VG PQ SA+ V A GV +ADGGI+ SGDI KA+A G+ CVM+GSL Sbjct: 316 ICITQEVCAVGRPQASAVYHVARYARERGVPCIADGGIKNSGDICKALALGADCVMLGSL 375 Query: 368 LAGTDESPGDIFLYQGRSFKSYRGMGSVAAM-ERGSSARYSQDGVTDVLKLVPEGIEGRV 426 LAGT+E+PG+ F G K YRGMGS+ AM + S RY + T V +G+ G V Sbjct: 376 LAGTEEAPGEYFFKDGVRLKVYRGMGSLEAMLSKESGERYLDENETI---KVAQGVSGSV 432 Query: 427 PYKGPIASVLHQMSGGLKSSMGYVGASNIEEFQKK-----ANFIRVSVAGLRESHVHDV 480 KG +A ++ + G+K M Y+GA +I E +K F R S + ++E VH + Sbjct: 433 VDKGSVAKLIPYLVKGVKHGMQYIGAHSIPELHEKLYSGQVRFERRSGSAIKEGGVHSL 491 >gnl|CDD|177913 PLN02274, PLN02274, inosine-5'-monophosphate dehydrogenase. Length = 505 Score = 352 bits (906), Expect = 1e-97 Identities = 176/482 (36%), Positives = 273/482 (56%), Gaps = 17/482 (3%) Query: 11 GVALTFDDVLLRPEFSNVLPRDIDISTRIAKDFTLNLPIMSAAMDQVTDSRLAIAMAQAG 70 GV+ T+DDV+ P + + +D+STR++++ L++P +S+ MD VT+S +AIAMA G Sbjct: 19 GVSYTYDDVIFHPGYIDFPADAVDLSTRLSRNIPLSIPCVSSPMDTVTESDMAIAMAALG 78 Query: 71 GLGVIHRNFSPSEQVAQVHQVKKFESGMVVNPVTISPYATLADALALMKKYSISGIPVVE 130 G+G++H N + EQ A V + K G V +PV SP +T++ L S + V E Sbjct: 79 GIGIVHYNNTAEEQAAIVRKAKSRRVGFVSDPVVKSPSSTISSLDELKASRGFSSVCVTE 138 Query: 131 SDV--GKLVGILTNRDVRFASNAQQAVGELMTR--NLITVKKTVNLENAKALLHQHRIEK 186 + KL+G +T RD F ++ + + E+MT +L+T ++LE A+A+L + K Sbjct: 139 TGTMGSKLLGYVTKRDWDFVNDRETKLSEVMTSDDDLVTAPAGIDLEEAEAVLKDSKKGK 198 Query: 187 LLVVDDDGCCIGLITVKDIERSQLNPNATK---DSKGRLRVAAAVSVAKDIADRVGPLFD 243 L +V++DG + L+T D++R + P K G+L V AA+ + +R+ L Sbjct: 199 LPLVNEDGELVDLVTRTDVKRVKGYPKLGKPSVGKDGKLLVGAAIGTRESDKERLEHLVK 258 Query: 244 VNVDLVVVDTAHGHSQKVLDAVVQIKKNFPSLLVMAGNIATAEGALALIDAGADIIKVGI 303 VD+VV+D++ G S L+ + IKK +P L V+ GN+ T A LI AG D ++VG+ Sbjct: 259 AGVDVVVLDSSQGDSIYQLEMIKYIKKTYPELDVIGGNVVTMYQAQNLIQAGVDGLRVGM 318 Query: 304 GPGSICTTRVVTGVGCPQLSAIMSVVEVAERAGVAIVADGGIRFSGDIAKAIAAGSACVM 363 G GSICTT+ V VG Q +A+ V +A + GV ++ADGGI SG I KA+ G++ VM Sbjct: 319 GSGSICTTQEVCAVGRGQATAVYKVASIAAQHGVPVIADGGISNSGHIVKALTLGASTVM 378 Query: 364 IGSLLAGTDESPGDIFLYQGRSFKSYRGMGSVAAMERGSSARYSQDGVTDVLKL-VPEGI 422 +GS LAGT E+PG+ F G K YRGMGS+ AM +GS RY + D KL + +G+ Sbjct: 379 MGSFLAGTTEAPGEYFYQDGVRVKKYRGMGSLEAMTKGSDQRY----LGDTAKLKIAQGV 434 Query: 423 EGRVPYKGPIASVLHQMSGGLKSSMGYVGASNIEEFQKK--ANFIRVSV---AGLRESHV 477 G V KG + + +K +GAS+++ + + +R+ V A E V Sbjct: 435 SGAVADKGSVLKFVPYTMQAVKQGFQDLGASSLQSAHELLRSGTLRLEVRTGAAQVEGGV 494 Query: 478 HD 479 H Sbjct: 495 HG 496 >gnl|CDD|181127 PRK07807, PRK07807, inosine 5-monophosphate dehydrogenase; Validated. Length = 479 Score = 314 bits (806), Expect = 4e-86 Identities = 188/481 (39%), Positives = 276/481 (57%), Gaps = 38/481 (7%) Query: 14 LTFDDVLLRPEFSNVLPR-DIDISTRIAKDFT-LNLPIMSAAMDQVTDSRLAIAMAQAGG 71 LT+DDV L P S+V R D+D+ST D T +P++ A M V R+A +A+ GG Sbjct: 13 LTYDDVFLVPSRSDVGSRFDVDLSTA---DGTGTTIPLVVANMTAVAGRRMAETVARRGG 69 Query: 72 LGVIHRNFSPSEQVAQ-VHQVKK----FESGMVVNPVTISPYATLADALALMKKYSISGI 126 L V+ ++ P + VA+ V VK F++ PVT+SP T+ DALAL+ K + G Sbjct: 70 LVVLPQDI-PIDVVAEVVAWVKSRDLVFDT-----PVTLSPDDTVGDALALLPKRA-HGA 122 Query: 127 PVVESDVGKLVGILTNRDV----RFASNAQQAVGELMTRNLITVKKTVNLENAKALLHQH 182 VV + G+ VG++T D RF V ++M+ +L+T+ + A LL Sbjct: 123 VVVVDEEGRPVGVVTEADCAGVDRFTQ-----VRDVMSTDLVTLPAGTDPREAFDLLEAA 177 Query: 183 RIEKLLVVDDDGCCIGLITVKDIERSQLNPNATKDSKGRLRVAAAVSVAKDIADRVGPLF 242 R++ VVD DG +G++T R+ + A D+ GRLRVAAAV + D+A + L Sbjct: 178 RVKLAPVVDADGRLVGVLTRTGALRATIYTPAV-DAAGRLRVAAAVGINGDVAAKARALL 236 Query: 243 DVNVDLVVVDTAHGHSQKVLDAVVQIKKNFPSLLVMAGNIATAEGALALIDAGADIIKVG 302 + VD++VVDTAHGH +K+L+A+ ++ P + ++AGN+ TAEG L++AGADI+KVG Sbjct: 237 EAGVDVLVVDTAHGHQEKMLEALRAVRALDPGVPIVAGNVVTAEGTRDLVEAGADIVKVG 296 Query: 303 IGPGSICTTRVVTGVGCPQLSAIMSVVEVAERAGVAIVADGGIRFSGDIAKAIAAGSACV 362 +GPG++CTTR++TGVG PQ SA++ A G + ADGG+R D+A A+AAG++ V Sbjct: 297 VGPGAMCTTRMMTGVGRPQFSAVLECAAAARELGAHVWADGGVRHPRDVALALAAGASNV 356 Query: 363 MIGSLLAGTDESPGDIFL-YQGRSFKSYRGMGSVAAMERGSSARYSQDGVTDVLK--LVP 419 MIGS AGT ESPGD+ GR +K GM S R +AR + D D + L Sbjct: 357 MIGSWFAGTYESPGDLMRDRDGRPYKESFGMAS----ARAVAARTAGDSAFDRARKALFE 412 Query: 420 EGIE-GRV---PYKGPIASVLHQMSGGLKSSMGYVGASNIEEFQKKANFIRVSVAGLRES 475 EGI R+ P + + +L ++ G++SS Y GA + EF ++A S AG E Sbjct: 413 EGISTSRMYLDPGRPGVEDLLDHITSGVRSSCTYAGARTLAEFHERAVVGVQSAAGYAEG 472 Query: 476 H 476 Sbjct: 473 R 473 >gnl|CDD|180725 PRK06843, PRK06843, inosine 5-monophosphate dehydrogenase; Validated. Length = 404 Score = 310 bits (795), Expect = 5e-85 Identities = 149/278 (53%), Positives = 199/278 (71%) Query: 203 KDIERSQLNPNATKDSKGRLRVAAAVSVAKDIADRVGPLFDVNVDLVVVDTAHGHSQKVL 262 K+ E + PNA KD +LRV AAVS+ D +RV L +VD++V+D+AHGHS +++ Sbjct: 123 KNAEHKEDFPNACKDLNNKLRVGAAVSIDIDTIERVEELVKAHVDILVIDSAHGHSTRII 182 Query: 263 DAVVQIKKNFPSLLVMAGNIATAEGALALIDAGADIIKVGIGPGSICTTRVVTGVGCPQL 322 + V +IK +P+L ++AGNI T E AL LI GAD +KVGIGPGSICTTR+V GVG PQ+ Sbjct: 183 ELVKKIKTKYPNLDLIAGNIVTKEAALDLISVGADCLKVGIGPGSICTTRIVAGVGVPQI 242 Query: 323 SAIMSVVEVAERAGVAIVADGGIRFSGDIAKAIAAGSACVMIGSLLAGTDESPGDIFLYQ 382 +AI V EV + + I+ADGGIRFSGD+ KAIAAG+ VMIG+L AGT ESP + +Y Sbjct: 243 TAICDVYEVCKNTNICIIADGGIRFSGDVVKAIAAGADSVMIGNLFAGTKESPSEEIIYN 302 Query: 383 GRSFKSYRGMGSVAAMERGSSARYSQDGVTDVLKLVPEGIEGRVPYKGPIASVLHQMSGG 442 G+ FKSY GMGS++AM+RGS +RY Q + KLVPEGIEG VPY G + +L Q+ GG Sbjct: 303 GKKFKSYVGMGSISAMKRGSKSRYFQLENNEPKKLVPEGIEGMVPYSGKLKDILTQLKGG 362 Query: 443 LKSSMGYVGASNIEEFQKKANFIRVSVAGLRESHVHDV 480 L S MGY+GA+ I + + + F+++S + L+ESH HDV Sbjct: 363 LMSGMGYLGAATISDLKINSKFVKISHSSLKESHPHDV 400 Score = 90.9 bits (225), Expect = 6e-19 Identities = 41/95 (43%), Positives = 67/95 (70%) Query: 7 NNVGGVALTFDDVLLRPEFSNVLPRDIDISTRIAKDFTLNLPIMSAAMDQVTDSRLAIAM 66 N + ALTFDDV L P S+VLP ++ + T++ K+ +LN+P +S+AMD VT+S++AIA+ Sbjct: 3 NKITKEALTFDDVSLIPRKSSVLPSEVSLKTQLTKNISLNIPFLSSAMDTVTESQMAIAI 62 Query: 67 AQAGGLGVIHRNFSPSEQVAQVHQVKKFESGMVVN 101 A+ GG+G+IH+N S Q ++ +VK ++ +N Sbjct: 63 AKEGGIGIIHKNMSIEAQRKEIEKVKTYKFQKTIN 97 >gnl|CDD|180842 PRK07107, PRK07107, inosine 5-monophosphate dehydrogenase; Validated. Length = 502 Score = 291 bits (746), Expect = 4e-79 Identities = 169/512 (33%), Positives = 261/512 (50%), Gaps = 31/512 (6%) Query: 1 MARIIENNVGGVALTFDDVLLRPEFSNV--LPRDIDISTRIAK-------DFTLNLPIMS 51 MA E + TF + LL P S+ +P ++ + T + K TLN+P++S Sbjct: 1 MAFYFE----EPSRTFSEYLLVPGLSSKECVPANVSLKTPLVKFKKGEESAITLNIPLVS 56 Query: 52 AAMDQVTDSRLAIAMAQAGGLGVIHRNFSPSEQVAQVHQVKKFESGMVVNPVTISPYATL 111 A M V+D +AIA+A+ GGL I + S + A V +VK +++G VV+ ++P TL Sbjct: 57 AIMQSVSDDNMAIALAREGGLSFIFGSQSIESEAAMVRRVKNYKAGFVVSDSNLTPDNTL 116 Query: 112 ADALALMKKYSISGIPVVE--SDVGKLVGILTNRDVR-FASNAQQAVGELMT--RNLITV 166 AD L L +K S + V E + GKL+GI+T+RD R + V + MT L+T Sbjct: 117 ADVLDLKEKTGHSTVAVTEDGTAHGKLLGIVTSRDYRISRMSLDTKVKDFMTPFEKLVTA 176 Query: 167 KKTVNLENAKALLHQHRIEKLLVVDDDGCCIGLITVKDIERSQLNPNATKDSKGRLRVAA 226 + L+ A ++ H++ L +VD +G + L+ KD + + NP DS R V A Sbjct: 177 NEGTTLKEANDIIWDHKLNTLPIVDKNGNLVYLVFRKDYDSHKENPLELLDSSKRYVVGA 236 Query: 227 AVSVAKDIADRVGPLFDVNVDLVVVDTAHGHSQKVLDAVVQIKKNF-PSLLVMAGNIATA 285 ++ +D A+RV L + D++ +D++ G+S+ + I++ + S+ V AGN+ Sbjct: 237 GIN-TRDYAERVPALVEAGADVLCIDSSEGYSEWQKRTLDWIREKYGDSVKVGAGNVVDR 295 Query: 286 EGALALIDAGADIIKVGIGPGSICTTRVVTGVGCPQLSAIMSVV----EVAERAGV--AI 339 EG L +AGAD +KVGIG GSIC TR G+G Q +A++ V E E GV I Sbjct: 296 EGFRYLAEAGADFVKVGIGGGSICITREQKGIGRGQATALIEVAKARDEYFEETGVYIPI 355 Query: 340 VADGGIRFSGDIAKAIAAGSACVMIGSLLAGTDESPGDIFLYQGRSFKSYRGMGSVAAME 399 +DGGI + + A+A G+ +M+G A DESP + G K Y G GS A Sbjct: 356 CSDGGIVYDYHMTLALAMGADFIMLGRYFARFDESPTNKVNINGNYMKEYWGEGSNRAR- 414 Query: 400 RGSSARYSQDGVTDVLKLVPEGIEGRVPYKGPIASVLHQMSGGLKSSMGYVGASNIEEFQ 459 + RY G + EG++ VPY G + + ++S+M GA +I E Q Sbjct: 415 --NWQRYDLGGDKKL--SFEEGVDSYVPYAGSLKDNVAITLSKVRSTMCNCGALSIPELQ 470 Query: 460 KKANFIRVSVAGLRESHVHDVKITRESPNYSE 491 +KA VS + E HDV + +S N + Sbjct: 471 QKAKITLVSSTSIVEGGAHDVILKDKSNNLIK 502 >gnl|CDD|130370 TIGR01303, IMP_DH_rel_1, IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302. Length = 475 Score = 278 bits (712), Expect = 2e-75 Identities = 170/482 (35%), Positives = 267/482 (55%), Gaps = 19/482 (3%) Query: 3 RIIENNVGGVALTFDDVLLRPEFSNVLPR-DIDISTRIAKDFTLNLPIMSAAMDQVTDSR 61 R + + G LT++DV + P S V R D+D+ST T+ P++ A M V R Sbjct: 1 RFLNGHPPGYDLTYNDVFMVPSRSEVGSRFDVDLSTADGTGTTI--PLVVANMTAVAGRR 58 Query: 62 LAIAMAQAGGLGVIHRNFSPSEQVAQVHQVKKFESGMVVNPVTISPYATLADALALMKKY 121 +A +A+ GG+ ++ ++ P V Q K ++ P+T++P+ T++DA+AL+ K Sbjct: 59 MAETVARRGGIVILPQDL-PIPAVKQTVAFVKSRDLVLDTPITLAPHDTVSDAMALIHKR 117 Query: 122 SISGIPVVESDVGKLVGILTNRDVRFASNAQQAVGELMTRNLITVKKTVNLENAKALLHQ 181 + V+ D + VG++T+ D+ Q V ++M+ +L+T A LL Sbjct: 118 AHGAAVVILED--RPVGLVTDSDLLGVDRFTQ-VRDIMSTDLVTAPADTEPRKAFDLLEH 174 Query: 182 HRIEKLLVVDDDGCCIGLITVKDIERSQLNPNATKDSKGRLRVAAAVSVAKDIADRVGPL 241 + +VD DG G++T R+ + AT D+ GRLR+ AAV + D+ + L Sbjct: 175 APRDVAPLVDADGTLAGILTRTGALRATIYTPAT-DAAGRLRIGAAVGINGDVGGKAKAL 233 Query: 242 FDVNVDLVVVDTAHGHSQKVLDAVVQIKKNFPSLLVMAGNIATAEGALALIDAGADIIKV 301 D VD++V+DTAHGH K++ A+ ++ + ++AGN+ +AEG L++AGA+IIKV Sbjct: 234 LDAGVDVLVIDTAHGHQVKMISAIKAVRALDLGVPIVAGNVVSAEGVRDLLEAGANIIKV 293 Query: 302 GIGPGSICTTRVVTGVGCPQLSAIMSVVEVAERAGVAIVADGGIRFSGDIAKAIAAGSAC 361 G+GPG++CTTR++TGVG PQ SA++ A + G + ADGG+R D+A A+AAG++ Sbjct: 294 GVGPGAMCTTRMMTGVGRPQFSAVLECAAEARKLGGHVWADGGVRHPRDVALALAAGASN 353 Query: 362 VMIGSLLAGTDESPGDI-FLYQGRSFKSYRGMGSVAAMERGSSARYSQDGVTDVLK--LV 418 VM+GS AGT ESPGD+ GR +K GM S A+ AR D D + L Sbjct: 354 VMVGSWFAGTYESPGDLMRDRDGRPYKESFGMASKRAVV----ARTGADNAFDRARKALF 409 Query: 419 PEGIE----GRVPYKGPIASVLHQMSGGLKSSMGYVGASNIEEFQKKANFIRVSVAGLRE 474 EGI G P +G + ++ + G++SS Y GAS++EEF ++A S AG E Sbjct: 410 EEGISTSRMGLDPDRGGVEDLIDHIISGVRSSCTYAGASSLEEFHERAVVGVQSGAGYAE 469 Query: 475 SH 476 Sbjct: 470 GK 471 >gnl|CDD|179935 PRK05096, PRK05096, guanosine 5'-monophosphate oxidoreductase; Provisional. Length = 346 Score = 207 bits (530), Expect = 4e-54 Identities = 93/220 (42%), Positives = 131/220 (59%), Gaps = 12/220 (5%) Query: 251 VDTAHGHSQKVLDAVVQIKKNFPSLLVMAGNIATAEGALALIDAGADIIKVGIGPGSICT 310 +D A+G+S+ + V + ++ +P + AGN+ T E LI +GADI+KVGIGPGS+CT Sbjct: 128 IDVANGYSEHFVQFVAKAREAWPDKTICAGNVVTGEMVEELILSGADIVKVGIGPGSVCT 187 Query: 311 TRVVTGVGCPQLSAIMSVVEVAERAGVAIVADGGIRFSGDIAKAIAAGSACVMIGSLLAG 370 TRV TGVG PQLSA++ + A G IV+DGG GD+AKA G+ VM+G +LAG Sbjct: 188 TRVKTGVGYPQLSAVIECADAAHGLGGQIVSDGGCTVPGDVAKAFGGGADFVMLGGMLAG 247 Query: 371 TDESPGDIFLYQGRSFKSYRGMGSVAAMER--GSSARYSQDGVTDVLKLVPEGIEGRVPY 428 +ES G+I G F + GM S +AM+R G A Y EG ++P Sbjct: 248 HEESGGEIVEENGEKFMLFYGMSSESAMKRHVGGVAEYR----------AAEGKTVKLPL 297 Query: 429 KGPIASVLHQMSGGLKSSMGYVGASNIEEFQKKANFIRVS 468 +GP+ + + GGL+S+ YVGAS ++E K+ FIRV Sbjct: 298 RGPVENTARDILGGLRSACTYVGASRLKELTKRTTFIRVQ 337 Score = 39.5 bits (93), Expect = 0.002 Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 13/89 (14%) Query: 14 LTFDDVLLRPEFSNVLPR-DIDISTRIAKDFTL--------NLPIMSAAMDQVTDSRLAI 64 L F DVL+RP+ S + R D+++ + FT +PI++A MD V +A Sbjct: 9 LGFKDVLIRPKRSTLKSRSDVELE----RQFTFKHSGQSWSGVPIIAANMDTVGTFEMAK 64 Query: 65 AMAQAGGLGVIHRNFSPSEQVAQVHQVKK 93 A+A L +H+++S E A V+ Sbjct: 65 ALASFDILTAVHKHYSVEEWAAFVNNSSA 93 >gnl|CDD|130372 TIGR01305, GMP_reduct_1, guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences. Length = 343 Score = 189 bits (481), Expect = 2e-48 Identities = 93/225 (41%), Positives = 135/225 (60%), Gaps = 12/225 (5%) Query: 246 VDLVVVDTAHGHSQKVLDAVVQIKKNFPSLLVMAGNIATAEGALALIDAGADIIKVGIGP 305 + + +D A+G+S+ ++ V +++ FP +MAGN+ T E LI +GADI+KVGIGP Sbjct: 122 LKFICLDVANGYSEHFVEFVKLVREAFPEHTIMAGNVVTGEMVEELILSGADIVKVGIGP 181 Query: 306 GSICTTRVVTGVGCPQLSAIMSVVEVAERAGVAIVADGGIRFSGDIAKAIAAGSACVMIG 365 GS+CTTR TGVG PQLSA++ + A I++DGG GD+AKA AG+ VM+G Sbjct: 182 GSVCTTRTKTGVGYPQLSAVIECADAAHGLKGHIISDGGCTCPGDVAKAFGAGADFVMLG 241 Query: 366 SLLAGTDESPGDIFLYQGRSFKSYRGMGSVAAMER--GSSARYSQDGVTDVLKLVPEGIE 423 + AG ES G++ GR FK + GM S AM++ G A Y EG Sbjct: 242 GMFAGHTESGGEVIERNGRKFKLFYGMSSDTAMKKHAGGVAEYR----------ASEGKT 291 Query: 424 GRVPYKGPIASVLHQMSGGLKSSMGYVGASNIEEFQKKANFIRVS 468 VPY+G + + + + GGL+S+ YVGA+ ++E K+A FIRV+ Sbjct: 292 VEVPYRGDVENTILDILGGLRSACTYVGAAKLKELSKRATFIRVT 336 Score = 39.1 bits (91), Expect = 0.002 Identities = 26/75 (34%), Positives = 41/75 (54%), Gaps = 5/75 (6%) Query: 14 LTFDDVLLRPEFSNVLPR-DIDIST----RIAKDFTLNLPIMSAAMDQVTDSRLAIAMAQ 68 L F DVLLRP+ S + R D+++ R +K +PI++A MD V +A A++Q Sbjct: 8 LDFKDVLLRPKRSTLKSRADVELERTFTFRNSKQTYSGVPIIAANMDTVGTFEMAAALSQ 67 Query: 69 AGGLGVIHRNFSPSE 83 IH+++S E Sbjct: 68 HSIFTAIHKHYSVDE 82 >gnl|CDD|180097 PRK05458, PRK05458, guanosine 5'-monophosphate oxidoreductase; Provisional. Length = 326 Score = 171 bits (436), Expect = 3e-43 Identities = 89/223 (39%), Positives = 125/223 (56%), Gaps = 21/223 (9%) Query: 247 DLVVVDTAHGHSQKVLDAVVQIKKNFPSLLVMAGNIATAEGALALIDAGADIIKVGIGPG 306 + + +D AHGHS V++ + IKK+ P V+AGN+ T E L +AGAD KVGIGPG Sbjct: 113 EYITIDIAHGHSDSVINMIQHIKKHLPETFVIAGNVGTPEAVRELENAGADATKVGIGPG 172 Query: 307 SICTTRVVTGVGCP--QLSAIMSVVEVAERAGVAIVADGGIRFSGDIAKAIAAGSACVMI 364 +C T++ TG G QL+A+ + A + I+ADGGIR GDIAK+I G+ VMI Sbjct: 173 KVCITKIKTGFGTGGWQLAALRWCAKAARK---PIIADGGIRTHGDIAKSIRFGATMVMI 229 Query: 365 GSLLAGTDESPGDIFLYQGRSFKSYRGMGSVAAMERGSSARYSQDGVTDVLKLVPEGIEG 424 GSL AG +ESPG G+ +K Y G SA Q G K V EG + Sbjct: 230 GSLFAGHEESPGKTVEIDGKLYKEYFG-----------SASEFQKGEY---KNV-EGKKI 274 Query: 425 RVPYKGPIASVLHQMSGGLKSSMGYVGASNIEEFQKKANFIRV 467 VP+KG + L +M L+SS+ Y G +++ +K +++ V Sbjct: 275 LVPHKGSLKDTLTEMEQDLQSSISYAGGRDLDAI-RKVDYVIV 316 Score = 34.5 bits (80), Expect = 0.066 Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 3/79 (3%) Query: 16 FDDVLLRPEFSNVLPR-DIDISTRIAKDFTLNLPIMSAAMDQVTDSRLAIAMAQAGGLGV 74 ++D+ L P V R + D S + T LP++ A M + D ++A +A+ G + Sbjct: 7 YEDIQLIPNKCIVNSRSECDTSVTLGP-RTFKLPVVPANMQTIIDEKIAEWLAENGYFYI 65 Query: 75 IHRNFSPSEQVAQVHQVKK 93 +HR F P ++ + + + Sbjct: 66 MHR-FDPEARIPFIKDMHE 83 >gnl|CDD|130373 TIGR01306, GMP_reduct_2, guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages. Length = 321 Score = 150 bits (381), Expect = 6e-37 Identities = 81/215 (37%), Positives = 120/215 (55%), Gaps = 20/215 (9%) Query: 247 DLVVVDTAHGHSQKVLDAVVQIKKNFPSLLVMAGNIATAEGALALIDAGADIIKVGIGPG 306 + + +D AHGHS V++ + IK + P V+AGN+ T E L +AGAD KVGIGPG Sbjct: 110 EYITIDIAHGHSNSVINMIKHIKTHLPDSFVIAGNVGTPEAVRELENAGADATKVGIGPG 169 Query: 307 SICTTRVVTGVGCP--QLSAIMSVVEVAERAGVAIVADGGIRFSGDIAKAIAAGSACVMI 364 +C T++ TG G QL+A+ + A + I+ADGGIR GDIAK+I G++ VMI Sbjct: 170 KVCITKIKTGFGTGGWQLAALRWCAKAARK---PIIADGGIRTHGDIAKSIRFGASMVMI 226 Query: 365 GSLLAGTDESPGDIFLYQGRSFKSYRGMGSVAAMERGSSARYSQDGVTDVLKLVPEGIEG 424 GSL AG +ESPG+ G+ +K Y GS + ++G EG + Sbjct: 227 GSLFAGHEESPGETVEKDGKLYKEY--FGSASEFQKGEHKNV-------------EGKKM 271 Query: 425 RVPYKGPIASVLHQMSGGLKSSMGYVGASNIEEFQ 459 V +KG ++ L +M L+SS+ Y G +++ + Sbjct: 272 FVEHKGSLSDTLIEMQQDLQSSISYAGGKDLDSLR 306 Score = 33.4 bits (76), Expect = 0.15 Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 3/71 (4%) Query: 16 FDDVLLRPEFSNVLPR-DIDISTRIAKDFTLNLPIMSAAMDQVTDSRLAIAMAQAGGLGV 74 ++D+ L P V R + D S + K LP++ A M + D +LA +A+ G + Sbjct: 4 YEDIQLIPNKCIVNSRSECDTSVTLGK-HKFKLPVVPANMQTIIDEKLAEQLAENGYFYI 62 Query: 75 IHRNFSPSEQV 85 +HR F ++ Sbjct: 63 MHR-FDEESRI 72 >gnl|CDD|181521 PRK08649, PRK08649, inosine 5-monophosphate dehydrogenase; Validated. Length = 368 Score = 123 bits (311), Expect = 1e-28 Identities = 85/264 (32%), Positives = 119/264 (45%), Gaps = 60/264 (22%) Query: 224 VAAAVSVAKDIADRVGP-LFDVNVDLVV-----VDTAH-GHSQKVLDAVVQIKKNFPSLL 276 V AVS++ A + P + + VDL V V H + L+ K F L Sbjct: 132 VIVAVSLSPQRAQELAPTVVEAGVDLFVIQGTVVSAEHVSKEGEPLNL-----KEFIYEL 186 Query: 277 ---VMAGNIATAEGALALIDAGADIIKVGIGPGSICTTRVVTGVGCPQLSAIMSVVE--- 330 V+ G T AL L+ GA + VGIGPG+ CT+R V G+G P +AI V Sbjct: 187 DVPVIVGGCVTYTTALHLMRTGAAGVLVGIGPGAACTSRGVLGIGVPMATAIADVAAARR 246 Query: 331 --VAERAG--VAIVADGGIRFSGDIAKAIAAGSACVMIGSLLAGTDESPGDIFLYQGRSF 386 + E G V ++ADGGI SGDIAKAIA G+ VM+GS LA E+PG + + Sbjct: 247 DYLDETGGRYVHVIADGGIGTSGDIAKAIACGADAVMLGSPLARAAEAPGRGWHW----- 301 Query: 387 KSYRGMGSVAAMERGSSARYSQDGVTDVLKLVPEGIEGRVPYKGPIASVL---------- 436 G +A + +P G +V G + +L Sbjct: 302 --------------GMAAPHPS---------LPRGTRIKVGTTGSLEQILFGPSHLPDGT 338 Query: 437 HQMSGGLKSSMGYVGASNIEEFQK 460 H + G L+ SM +G S+++EFQK Sbjct: 339 HNLVGALRRSMATLGYSDLKEFQK 362 Score = 51.4 bits (124), Expect = 5e-07 Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 1/61 (1%) Query: 16 FDDVLLRPEFSNVLPRDIDISTRIAKDFTLNLPIMSAAMDQVTDSRLAIAMAQAGGLGVI 75 D++ + P P D+ S +I + +PI+++ MD V AI + + GGLGV+ Sbjct: 18 LDEIAIVPSRRTRDPEDVSTSWQID-AYRFEIPIIASPMDAVVSPETAIELGKLGGLGVL 76 Query: 76 H 76 + Sbjct: 77 N 77 >gnl|CDD|162294 TIGR01304, IMP_DH_rel_2, IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302. Length = 369 Score = 93.4 bits (232), Expect = 1e-19 Identities = 84/299 (28%), Positives = 129/299 (43%), Gaps = 39/299 (13%) Query: 181 QHRIEKLLVVDDDGCCIGLI-TVKDIERSQLNPNATKDSKGRLR---VAAAVSVAKDIAD 236 I K+ ++G ++++ + L P + +R V AV V+ A Sbjct: 86 DPAIAKIAEAYEEGDQAAATRLLQELHAAPLKPELLGERIAEVRDSGVITAVRVSPQNAR 145 Query: 237 RVGP-LFDVNVDLVV-----VDTAH-GHSQKVLDAVVQIKK-NFPSLLVMAGNIATAEGA 288 + P + DL+V V H S + L+ I + + P V+AG + A Sbjct: 146 EIAPIVVKAGADLLVIQGTLVSAEHVSTSGEPLNLKEFIGELDVP---VIAGGVNDYTTA 202 Query: 289 LALIDAGADIIKVGIGPGSICTTRVVTGVGCPQLSAIMSVVE-----VAERAG--VAIVA 341 L L+ GA V +GPG TTR+V G+ P +AI V + E G V ++A Sbjct: 203 LHLMRTGA--AGVIVGPGGANTTRLVLGIEVPMATAIADVAAARRDYLDETGGRYVHVIA 260 Query: 342 DGGIRFSGDIAKAIAAGSACVMIGSLLAGTDESPGDIFLYQGRSFKSYRGMGSVAAMERG 401 DGGI SGD+ KAIA G+ V++GS LA E+PG + + + AA R Sbjct: 261 DGGIETSGDLVKAIACGADAVVLGSPLARAAEAPGRGYFW-----------PAAAAHPRL 309 Query: 402 SSARYSQDGVTDVLKLVPEGIEGRVPYKGPIASVLHQMSGGLKSSMGYVGASNIEEFQK 460 ++ G + E + G P P GGLK +M G ++++EFQK Sbjct: 310 PRGVVTESGTVGEAPTLEEILHG--PSTLPDGV--ENFEGGLKRAMAKCGYTDLKEFQK 364 Score = 41.7 bits (98), Expect = 4e-04 Identities = 20/87 (22%), Positives = 41/87 (47%), Gaps = 7/87 (8%) Query: 13 ALTFDDVLLRPEFSNVLPRDIDISTRIAKDFTLNLPIMSAAMDQVTDSRLAIAMAQAGGL 72 + DD+ + P +D+D + +I + LP ++ MD + AI + + GGL Sbjct: 12 TYSLDDISVVPSRRTRSSKDVDTAWQIDA-YRFELPFIAHPMDALVSPEFAIELGELGGL 70 Query: 73 GVIH------RNFSPSEQVAQVHQVKK 93 GV++ R+ P +A++ + + Sbjct: 71 GVLNLEGLWGRHEDPDPAIAKIAEAYE 97 >gnl|CDD|129488 TIGR00393, kpsF, KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli. Length = 268 Score = 49.8 bits (119), Expect = 2e-06 Identities = 51/194 (26%), Positives = 80/194 (41%), Gaps = 24/194 (12%) Query: 22 RPEFSNVLPRDIDISTRIAKDFT-LNL-PIMSAAMDQVTDSRLAIAMAQAGGLGVIHRNF 79 P S D + ++ K+ +NL P S + LA+A+ +A RNF Sbjct: 83 SPNSSLARAADYVLDIKVEKEACPINLAPTTSTTLTLALGDALAVALMRA-------RNF 135 Query: 80 SPSEQVAQVHQ---------VKKFESGMVVNPVTISPYATLADALALMKKYSISGIPVVE 130 S E A H VK + + I+P + DAL M + + G +V Sbjct: 136 SQ-EDFASFHPGGALGRKLLVKVKDLMQTTDLPLIAPTTSFKDALLEMSEKRL-GSAIVC 193 Query: 131 SDVGKLVGILTNRDVRFASNA----QQAVGELMTRNLITVKKTVNLENAKALLHQHRIEK 186 + +LVG+ T+ D+R A + V + MT T K L A L + +I Sbjct: 194 DENNQLVGVFTDGDLRRALLGGGSLKSEVRDFMTLGPKTFKLDALLLEALEFLERRKITS 253 Query: 187 LLVVDDDGCCIGLI 200 L+VVDD +G++ Sbjct: 254 LVVVDDHNKVLGVL 267 Score = 28.2 bits (63), Expect = 4.4 Identities = 14/54 (25%), Positives = 29/54 (53%), Gaps = 1/54 (1%) Query: 155 VGELM-TRNLITVKKTVNLENAKALLHQHRIEKLLVVDDDGCCIGLITVKDIER 207 V +LM T +L + T + ++A + + R+ +V D++ +G+ T D+ R Sbjct: 157 VKDLMQTTDLPLIAPTTSFKDALLEMSEKRLGSAIVCDENNQLVGVFTDGDLRR 210 >gnl|CDD|184871 PRK14869, PRK14869, putative manganese-dependent inorganic pyrophosphatase; Provisional. Length = 546 Score = 49.4 bits (119), Expect = 2e-06 Identities = 16/63 (25%), Positives = 36/63 (57%) Query: 155 VGELMTRNLITVKKTVNLENAKALLHQHRIEKLLVVDDDGCCIGLITVKDIERSQLNPNA 214 V +L +TV +L+ A L+ ++ ++ L VVD++G +GL+++ D+ R+ ++ Sbjct: 70 VRDLEIDKPVTVSPDTSLKEAWNLMDENNVKTLPVVDEEGKLLGLVSLSDLARAYMDILD 129 Query: 215 TKD 217 + Sbjct: 130 PEI 132 Score = 47.1 bits (113), Expect = 9e-06 Identities = 17/44 (38%), Positives = 30/44 (68%), Gaps = 1/44 (2%) Query: 101 NPVTISPYATLADALALMKKYSISGIPVVESDVGKLVGILTNRD 144 PVT+SP +L +A LM + ++ +PVV+ + GKL+G+++ D Sbjct: 77 KPVTVSPDTSLKEAWNLMDENNVKTLPVVDEE-GKLLGLVSLSD 119 Score = 34.0 bits (79), Expect = 0.092 Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 5/63 (7%) Query: 155 VGELM-TRNLITVKKTVNLENAKALLHQHRIEKLLVVDDDGCCIGLITVKDIERSQLNPN 213 V +M T +L+T K LE+ K ++ + R VVD+DG +G+I+ + L+P Sbjct: 248 VSYIMTTEDLVTFSKDDYLEDVKEVMLKSRYRSYPVVDEDGKVVGVISRYHL----LSPV 303 Query: 214 ATK 216 K Sbjct: 304 RKK 306 >gnl|CDD|128426 smart00116, CBS, Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease. Length = 49 Score = 48.3 bits (116), Expect = 4e-06 Identities = 21/45 (46%), Positives = 34/45 (75%), Gaps = 1/45 (2%) Query: 101 NPVTISPYATLADALALMKKYSISGIPVVESDVGKLVGILTNRDV 145 + VT+SP TL +AL L++++ I +PVV+ + G+LVGI+T RD+ Sbjct: 1 DVVTVSPDTTLEEALELLREHGIRRLPVVDEE-GRLVGIVTRRDI 44 Score = 39.4 bits (93), Expect = 0.002 Identities = 18/44 (40%), Positives = 29/44 (65%) Query: 162 NLITVKKTVNLENAKALLHQHRIEKLLVVDDDGCCIGLITVKDI 205 +++TV LE A LL +H I +L VVD++G +G++T +DI Sbjct: 1 DVVTVSPDTTLEEALELLREHGIRRLPVVDEEGRLVGIVTRRDI 44 >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature. Length = 363 Score = 46.4 bits (110), Expect = 2e-05 Identities = 29/125 (23%), Positives = 56/125 (44%), Gaps = 2/125 (1%) Query: 77 RNFSPSEQVAQVHQVKKFESGMVVNPVTISPYATLADALALMKKYSISGIPVVESDVGKL 136 F ++QV ++ M P+T + AL LM+ + + VV+ KL Sbjct: 227 EEFIGKVDLSQVFDAERIAQRMNTGPITKTADKGPRSALQLMRDERVDSLYVVD-RQNKL 285 Query: 137 VGILTNRDVRFASNAQQAVGELMTRNLITVKKTVNLENAKALLHQHRIEKLLVVDDDGCC 196 VG++ ++ A Q + +++ ++ TV L + + I K+ VVD+D Sbjct: 286 VGVVDVESIKQARKKAQGLQDVLIDDIYTVDAGTLLRETVRKVLKAGI-KVPVVDEDQRL 344 Query: 197 IGLIT 201 +G++T Sbjct: 345 VGIVT 349 >gnl|CDD|162220 TIGR01137, cysta_beta, cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven. Length = 454 Score = 45.9 bits (109), Expect = 2e-05 Identities = 33/131 (25%), Positives = 62/131 (47%), Gaps = 9/131 (6%) Query: 80 SPSEQVAQVHQVKKFESGMVVNPVTISPYATLADALALMKKYSISGIPVVESDVGKLVGI 139 V V + + + PVT+ P T+ DA+ ++++Y +PVV GK++G Sbjct: 323 DEVLTVFDVLKNATVKDLHLPAPVTVHPTETVGDAIEILREYGFDQLPVVTEA-GKVLGS 381 Query: 140 LTNR---DVRFASNAQ--QAVGELMTRNLITVKKTVNLENAKALLHQHRIEKLLVVDDDG 194 +T R FA A AV ++M++ I + + L + L ++ +V ++G Sbjct: 382 VTLRELLSALFAGKANPDDAVSKVMSKKFIQIGEGEKLSDLSKFLEKN---SSAIVTEEG 438 Query: 195 CCIGLITVKDI 205 IG++T D+ Sbjct: 439 KPIGVVTKIDL 449 >gnl|CDD|183186 PRK11543, gutQ, D-arabinose 5-phosphate isomerase; Provisional. Length = 321 Score = 42.8 bits (101), Expect = 2e-04 Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 4/88 (4%) Query: 125 GIPVVESDVGKLVGILTNRDVRF----ASNAQQAVGELMTRNLITVKKTVNLENAKALLH 180 G+ V ++ G+ T+ D+R V E MTR T++ +AK +L Sbjct: 231 GLVAVCDAQQQVQGVFTDGDLRRWLVGGGALTTPVNEAMTRGGTTLQAQSRAIDAKEILM 290 Query: 181 QHRIEKLLVVDDDGCCIGLITVKDIERS 208 + +I VVD++G G I ++D ++ Sbjct: 291 KRKITAAPVVDENGKLTGAINLQDFYQA 318 >gnl|CDD|132195 TIGR03151, enACPred_II, putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase. Length = 307 Score = 42.4 bits (100), Expect = 3e-04 Identities = 28/100 (28%), Positives = 46/100 (46%), Gaps = 7/100 (7%) Query: 37 TRIAKDFTLNLPIMSAAMDQVTDSRLAIAMAQAGGLGVIHRNFSPSEQV-AQVHQVKKF- 94 TR+ + PI M V LA A++ AGGLG+I +P + V ++ +VK+ Sbjct: 2 TRLCDLLGIEYPIFQGGMAWVATGSLAAAVSNAGGLGIIGAGNAPPDVVRKEIRKVKELT 61 Query: 95 ESGMVVNPVTISPYATLADALALMKKYSISGIPVVESDVG 134 + VN + +SP+ L+ +PVV + G Sbjct: 62 DKPFGVNIMLLSPFVD-----ELVDLVIEEKVPVVTTGAG 96 >gnl|CDD|179231 PRK01130, PRK01130, N-acetylmannosamine-6-phosphate 2-epimerase; Provisional. Length = 221 Score = 41.3 bits (98), Expect = 5e-04 Identities = 29/115 (25%), Positives = 47/115 (40%), Gaps = 14/115 (12%) Query: 262 LDAVVQIKKNFPSLLVMAGNIATAEGALALIDAGADIIKVGIGP---GSICTTRVVTGVG 318 L +V+ K +P L+MA + +T E LA G D IG G T+ Sbjct: 107 LAELVKRIKEYPGQLLMA-DCSTLEEGLAAQKLGFDF----IGTTLSGYTEETKKPEEPD 161 Query: 319 CPQLSAIMSVVEVAERAGVAIVADGGIRFSGDIAKAIAAGSACVMIGSLLAGTDE 373 L E+ + G ++A+G I KA+ G+ V++G + +E Sbjct: 162 FALLK------ELLKAVGCPVIAEGRINTPEQAKKALELGAHAVVVGGAITRPEE 210 >gnl|CDD|129495 TIGR00400, mgtE, Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer. Length = 449 Score = 38.7 bits (90), Expect = 0.004 Identities = 54/288 (18%), Positives = 116/288 (40%), Gaps = 39/288 (13%) Query: 98 MVVNPVTISPYATLADALALMKKYSISGIPV----VESDVGKLVGILTNRDVRFASNAQQ 153 M + V + T+ AL +++ + + + V ++ L G+L+ RD+ A ++ Sbjct: 137 MTIEYVELKEDYTVGKALDYIRRVAKTKEDIYTLYVTNESKHLKGVLSIRDLILAKP-EE 195 Query: 154 AVGELMTRNLITVKKTVNLENAKALLHQHRIEKLLVVDDDGCCIGLITVKDIERSQLNPN 213 + +M ++ ++ + E L+ ++ + VVD++G +G++TV DI + Sbjct: 196 ILSSIMRSSVFSIVGVNDQEEVARLIQKYDFLAVPVVDNEGRLVGIVTVDDI-IDVIQSE 254 Query: 214 ATKDSKGRLRVAAAVSVAKDIA----------DRVGPLFDVNVDLVVVDTAHGHSQKVLD 263 AT+D + AAV D +R+ L + V T + + +L Sbjct: 255 ATED----FYMIAAVKPLDDSYFDTSILVMAKNRIIWLLVLLVSSTFTATIISNYEDLLL 310 Query: 264 AVVQIKKNFPSLLVMAGNIATAEGALALIDAGADIIKVGIGPGSICTTRVVTGVGCPQ-- 321 ++V + P L+ +GN + A+ + + +KV +V+ C Sbjct: 311 SLVALANFIPLLMDTSGNAGSQSSAVVIRGLALETVKVKD------FFKVILREICVSIL 364 Query: 322 LSAIMSVVEVAERAGVAIVADGGIRFSGDIAKAIAAGSACVMIGSLLA 369 + AI++ V + + F G + A S + + +A Sbjct: 365 VGAILASV-------NFLRI---VFFQGKLLIAFVVSS-SLFVSLTVA 401 >gnl|CDD|182814 PRK10892, PRK10892, D-arabinose 5-phosphate isomerase; Provisional. Length = 326 Score = 38.2 bits (89), Expect = 0.006 Identities = 31/110 (28%), Positives = 58/110 (52%), Gaps = 7/110 (6%) Query: 104 TISPYATLADALALMKKYSISGIPVVESDVGKLVGILTNRDVR----FASNAQQA-VGEL 158 +S A+L DAL + + ++ G+ V+ D K+ GI T+ D+R + +QA + ++ Sbjct: 216 HVSKTASLRDALLEITRKNL-GMTVICDDNMKIEGIFTDGDLRRVFDMGIDLRQASIADV 274 Query: 159 MTRNLITVKKTVNLENAKALLHQHRIEKLLVVDDDGCCIGLITVKDIERS 208 MT I V+ + +A L+ I +LV D D +G++ + D+ R+ Sbjct: 275 MTPGGIRVRPGILAVDALNLMQSRHITSVLVADGDH-LLGVLHMHDLLRA 323 Score = 28.5 bits (64), Expect = 3.8 Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 2/47 (4%) Query: 98 MVVNPVTISPYATLADALALMKKYSISGIPVVESDVGKLVGILTNRD 144 M + + P DAL LM+ I+ + V + D L+G+L D Sbjct: 275 MTPGGIRVRPGILAVDALNLMQSRHITSVLVADGD--HLLGVLHMHD 319 >gnl|CDD|162241 TIGR01182, eda, Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida. Length = 204 Score = 37.3 bits (87), Expect = 0.008 Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 8/73 (10%) Query: 262 LDAVVQIKKNFPSLLVMAGNIATAEGALALIDAGADIIKVGIGPGSICTTRVVT---GVG 318 LDA+ ++K P L+ AG + E +DAGA I + PG T + G Sbjct: 47 LDAIRLLRKEVPDALIGAGTVLNPEQLRQAVDAGAQFI---VSPG--LTPELAKHAQDHG 101 Query: 319 CPQLSAIMSVVEV 331 P + + + E+ Sbjct: 102 IPIIPGVATPSEI 114 >gnl|CDD|183033 PRK11197, lldD, L-lactate dehydrogenase; Provisional. Length = 381 Score = 37.3 bits (87), Expect = 0.009 Identities = 29/96 (30%), Positives = 44/96 (45%), Gaps = 20/96 (20%) Query: 276 LVMAGNIATAEGALALIDAGADIIKVGIGPGSICTTRVVTGVGCPQLSAIMSVVE----V 331 +V+ G I E A + GAD GI VV+ G QL ++S + Sbjct: 248 MVIKG-ILDPEDARDAVRFGAD----GI---------VVSNHGGRQLDGVLSSARALPAI 293 Query: 332 AERAG--VAIVADGGIRFSGDIAKAIAAGSACVMIG 365 A+ + I+AD GIR D+ + IA G+ V++G Sbjct: 294 ADAVKGDITILADSGIRNGLDVVRMIALGADTVLLG 329 >gnl|CDD|178150 PLN02535, PLN02535, glycolate oxidase. Length = 364 Score = 36.4 bits (84), Expect = 0.017 Identities = 27/102 (26%), Positives = 48/102 (47%), Gaps = 19/102 (18%) Query: 270 KNFPSLLVMAGNIATAEGALALIDAGADIIKVGIGPGSICTTRVVTGVGCPQLS---AIM 326 ++ +L ++ + T E A+ ++ G I +V+ G QL A + Sbjct: 219 RSITNLPILIKGVLTREDAIKAVEVGVAGI-------------IVSNHGARQLDYSPATI 265 Query: 327 SVVE---VAERAGVAIVADGGIRFSGDIAKAIAAGSACVMIG 365 SV+E A V ++ DGG+R D+ KA+A G+ V++G Sbjct: 266 SVLEEVVQAVGGRVPVLLDGGVRRGTDVFKALALGAQAVLVG 307 >gnl|CDD|180220 PRK05718, PRK05718, keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase; Provisional. Length = 212 Score = 35.2 bits (82), Expect = 0.041 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 3/46 (6%) Query: 262 LDAVVQIKKNFPSLLVMAGNIATAEGALALIDAGADIIKVGIGPGS 307 L+A+ I K P L+ AG + E I+AGA I + PG Sbjct: 54 LEAIRLIAKEVPEALIGAGTVLNPEQLAQAIEAGAQFI---VSPGL 96 >gnl|CDD|178989 PRK00366, ispG, 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed. Length = 360 Score = 35.0 bits (82), Expect = 0.041 Identities = 21/84 (25%), Positives = 34/84 (40%), Gaps = 19/84 (22%) Query: 282 IATAEGALALIDAGADIIKVGIGPGSICTTRVVTGVGCPQLSAIMSVVEVAERAGVAIVA 341 AT L AG +I++ V P + A ++ E+ ++ V +VA Sbjct: 42 EATVAQIKRLARAGCEIVR----------------VAVPDMEAAAALPEIKKQLPVPLVA 85 Query: 342 DGGIRFSGDIA-KAIAAGSACVMI 364 D I F +A A AG+ + I Sbjct: 86 D--IHFDYRLALAAAEAGADALRI 107 >gnl|CDD|180081 PRK05437, PRK05437, isopentenyl pyrophosphate isomerase; Provisional. Length = 352 Score = 35.1 bits (82), Expect = 0.043 Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 6/53 (11%) Query: 327 SVVEVAE-RAGVAIVADGGIRFSGDIAKAIA-----AGSACVMIGSLLAGTDE 373 S++E + I+A GGIR DIAKA+A G A + + L G +E Sbjct: 251 SLLEARSLLPDLPIIASGGIRNGLDIAKALALGADAVGMAGPFLKAALEGGEE 303 >gnl|CDD|131755 TIGR02708, L_lactate_ox, L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence. Length = 367 Score = 34.5 bits (79), Expect = 0.063 Identities = 44/161 (27%), Positives = 64/161 (39%), Gaps = 30/161 (18%) Query: 222 LRVAAAVSVAKDIADRVGPLFDVNVDLV--VVDTAHGHS---------QKVLDAVVQIKK 270 L A V +++ R G +F V + +V + T G S QK+ ++ Sbjct: 165 LTADATVGGNREVDVRNGFVFPVGMPIVQEYLPTGAGKSMDNVYKSAKQKLSPRDIEEIA 224 Query: 271 NFPSLLVMAGNIATAEGALALIDAGADIIKVGIGPGSICTTRVVTGVGCPQL----SAIM 326 + L V E A + AGA I VT G QL +A Sbjct: 225 GYSGLPVYVKGPQCPEDADRALKAGASGI-------------WVTNHGGRQLDGGPAAFD 271 Query: 327 SVVEVAERAG--VAIVADGGIRFSGDIAKAIAAGSACVMIG 365 S+ EVAE V IV D G+R + KA+A+G+ V +G Sbjct: 272 SLQEVAEAVDKRVPIVFDSGVRRGQHVFKALASGADLVALG 312 >gnl|CDD|162733 TIGR02151, IPP_isom_2, isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids. Length = 333 Score = 33.8 bits (78), Expect = 0.11 Identities = 35/124 (28%), Positives = 51/124 (41%), Gaps = 19/124 (15%) Query: 261 VLDAVVQIKK--NFPSLLVMAGNIATAEGALALIDAGADIIKVGIGPGSICTTRVVTGV- 317 L+ + +I + P ++ G + E A L DAG I V G G +V Sbjct: 167 WLEKIAEICSQLSVPVIVKEVGFGISKEVAKLLADAGVSAIDVA-GAGGTSWAQVENYRA 225 Query: 318 ------------GCPQLSAIMSVVEVAERAGVAIVADGGIRFSGDIAKAIAAGSACV-MI 364 G P ++++ V A A I+A GG+R D+AKAIA G+ V M Sbjct: 226 KGSNLASFFNDWGIPTAASLLEVRSDAPDA--PIIASGGLRTGLDVAKAIALGADAVGMA 283 Query: 365 GSLL 368 L Sbjct: 284 RPFL 287 >gnl|CDD|181670 PRK09140, PRK09140, 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed. Length = 206 Score = 33.6 bits (78), Expect = 0.12 Identities = 28/94 (29%), Positives = 46/94 (48%), Gaps = 16/94 (17%) Query: 275 LLVMAGNIATAEGALALIDAGADIIKVGIGPGSICTTRVVTGVGCPQLSAIMSVVEVAER 334 ++VM G +AT A A + AGA +K + P S +G + A+ +V+ Sbjct: 105 MVVMPG-VATPTEAFAALRAGAQALK--LFPASQ--------LGPAGIKALRAVLP---- 149 Query: 335 AGVAIVADGGIRFSGDIAKAIAAGSACVMIGSLL 368 V + A GG+ ++A +AAG+A +GS L Sbjct: 150 PDVPVFAVGGVT-PENLAPYLAAGAAGFGLGSAL 182 >gnl|CDD|130109 TIGR01037, pyrD_sub1_fam, dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase. Length = 300 Score = 32.4 bits (74), Expect = 0.27 Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 11/92 (11%) Query: 286 EGALALIDAGADII---------KVGIGPGSICTTRVVTGVGCPQLS--AIMSVVEVAER 334 E A A +AGAD + K+ I G G+ P + A+ V +V + Sbjct: 173 EIAKAAEEAGADGLTLINTLRGMKIDIKTGKPILANKTGGLSGPAIKPIALRMVYDVYKM 232 Query: 335 AGVAIVADGGIRFSGDIAKAIAAGSACVMIGS 366 + I+ GGI D + + AG++ V +G+ Sbjct: 233 VDIPIIGVGGITSFEDALEFLMAGASAVQVGT 264 >gnl|CDD|132172 TIGR03128, RuMP_HxlA, 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase. Length = 206 Score = 32.0 bits (73), Expect = 0.36 Identities = 21/85 (24%), Positives = 37/85 (43%), Gaps = 20/85 (23%) Query: 262 LDAVVQIKKNFPSLLVMAGNIATAEG----ALALIDAGADIIKVGIGPGSICTTRVVTGV 317 ++AV ++K+ FP V+A ++ T + A AGADI+ V + Sbjct: 40 IEAVKEMKEAFPDRKVLA-DLKTMDAGEYEAEQAFAAGADIVTV---------------L 83 Query: 318 GCPQLSAIMSVVEVAERAGVAIVAD 342 G + I V+ A++ G + D Sbjct: 84 GVADDATIKGAVKAAKKHGKEVQVD 108 >gnl|CDD|132479 TIGR03438, TIGR03438, probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases. Length = 301 Score = 31.8 bits (73), Expect = 0.39 Identities = 23/100 (23%), Positives = 33/100 (33%), Gaps = 30/100 (30%) Query: 231 AKDIADRVGPLFDVNVDLVVVDTAHGHSQKV---LDA--------------------VVQ 267 A +IA G +V+ G S+K LDA Sbjct: 54 ADEIAAATGA------GCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAA 107 Query: 268 IKKNFPSLLVMAGNIATAEGALALIDAGADIIKVGIGPGS 307 + ++P L + G A LAL A ++G PGS Sbjct: 108 LAADYPQL-EVHGICADFTQPLALPPEPAAGRRLGFFPGS 146 >gnl|CDD|169939 PRK09517, PRK09517, multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional. Length = 755 Score = 31.9 bits (72), Expect = 0.43 Identities = 38/150 (25%), Positives = 63/150 (42%), Gaps = 14/150 (9%) Query: 224 VAAAVSVAKDIADRVG-PLF-DVNVDLVVVDTAHGHSQKVLDAVVQIKKNFPSLLVMAGN 281 V AA K++ D G L + +D+ V H H + Q ++ P+ L + Sbjct: 48 VRAAAKELKELCDARGVALVVNDRLDVAVELGLHVHIGQGDTPYTQARRLLPAHLELGLT 107 Query: 282 IATAEGALALID--AGADIIKV---GIGPGSICTTR--VVTGVGCPQLSAIMSVVEVAER 334 I T + A+I A + GIGP + T+ +G ++ I +V A+ Sbjct: 108 IETLDQLEAVIAQCAETGVALPDVIGIGPVASTATKPDAPPALGVDGIAEIAAV---AQD 164 Query: 335 AGVAIVADGGI--RFSGDIAKAIAAGSACV 362 G+A VA GG+ R + ++A G V Sbjct: 165 HGIASVAIGGVGLRNAAELAATGIDGLCVV 194 >gnl|CDD|185050 PRK15094, PRK15094, magnesium/cobalt efflux protein CorC; Provisional. Length = 292 Score = 31.7 bits (72), Expect = 0.49 Identities = 25/105 (23%), Positives = 51/105 (48%), Gaps = 2/105 (1%) Query: 103 VTISPYATLADALALMKKYSISGIPVVESDVGKLVGILTNRDVR--FASNAQQAVGELMT 160 +T+ TL + L ++ + + S PV+ D + GIL +D+ S+A+ + + Sbjct: 80 ITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMRSDAEAFSMDKVL 139 Query: 161 RNLITVKKTVNLENAKALLHQHRIEKLLVVDDDGCCIGLITVKDI 205 R + V ++ ++ R +V+D+ G GL+T++DI Sbjct: 140 RQAVVVPESKRVDRMLKEFRSQRYHMAIVIDEFGGVSGLVTIEDI 184 >gnl|CDD|161958 TIGR00612, ispG_gcpE, 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins. Length = 346 Score = 30.1 bits (68), Expect = 1.4 Identities = 26/97 (26%), Positives = 36/97 (37%), Gaps = 19/97 (19%) Query: 283 ATAEGALALIDAGADIIKVGIGPGSICTTRVVTGVGCPQLSAIMSVVEVAERAGVAIVAD 342 +T AL +AG DI++ V P + + + E V +VAD Sbjct: 35 STVAQIRALEEAGCDIVR----------------VTVPDRESAAAFEAIKEGTNVPLVAD 78 Query: 343 GGIRFSGD-IAKAIAAGSACVMIGSLLAGTDESPGDI 378 I F A A+A G A V I G E D+ Sbjct: 79 --IHFDYRLAALAMAKGVAKVRINPGNIGFRERVRDV 113 >gnl|CDD|179050 PRK00507, PRK00507, deoxyribose-phosphate aldolase; Provisional. Length = 221 Score = 29.8 bits (68), Expect = 1.7 Identities = 11/20 (55%), Positives = 14/20 (70%) Query: 278 MAGNIATAEGALALIDAGAD 297 +G I T E ALA+I+AGA Sbjct: 184 ASGGIRTLEDALAMIEAGAT 203 >gnl|CDD|166018 PLN02377, PLN02377, 3-ketoacyl-CoA synthase. Length = 502 Score = 29.2 bits (65), Expect = 2.3 Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 5/57 (8%) Query: 160 TRNLITVKKTVNLENAKALLHQHRIEKLLVVDDDGCCIGLITVKDIERSQLNPNATK 216 TR L ++VNL+ K L + + I LL + C I LI + IE SQ+NP+ + Sbjct: 12 TRMLPDFLQSVNLKYVK-LGYHYLISNLLTL----CFIPLIIIISIEASQMNPDDLR 63 >gnl|CDD|161661 TIGR00007, TIGR00007, phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317). Length = 230 Score = 29.1 bits (66), Expect = 3.0 Identities = 10/41 (24%), Positives = 18/41 (43%) Query: 328 VVEVAERAGVAIVADGGIRFSGDIAKAIAAGSACVMIGSLL 368 E+ + V ++A GG+ D+ G V++G L Sbjct: 181 TKELVKAVNVPVIASGGVSSIDDLIALKKLGVYGVIVGKAL 221 >gnl|CDD|183865 PRK13111, trpA, tryptophan synthase subunit alpha; Provisional. Length = 258 Score = 28.9 bits (66), Expect = 3.3 Identities = 13/30 (43%), Positives = 21/30 (70%), Gaps = 3/30 (10%) Query: 277 VMAG--NI-ATAEGALALIDAGADIIKVGI 303 + AG ++ + E AL++AGADII++GI Sbjct: 18 ITAGDPDLETSLEIIKALVEAGADIIELGI 47 >gnl|CDD|184165 PRK13585, PRK13585, 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional. Length = 241 Score = 28.7 bits (65), Expect = 3.5 Identities = 17/55 (30%), Positives = 30/55 (54%) Query: 248 LVVVDTAHGHSQKVLDAVVQIKKNFPSLLVMAGNIATAEGALALIDAGADIIKVG 302 LV +D A +K +A+ +I + + + G I +AE A +L+D G D + +G Sbjct: 51 LVDLDGAFEGERKNAEAIEKIIEAVGVPVQLGGGIRSAEDAASLLDLGVDRVILG 105 Score = 27.9 bits (63), Expect = 6.0 Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 7/69 (10%) Query: 303 IGPGSICTTRV-VTGVGCPQLSAIMS--VVEVAERAGVAIVADGGIRFSGDIAKAIAAGS 359 +G GSI T V V G L + + V E+ + + ++A GG+ D+ AG+ Sbjct: 161 LGAGSILFTNVDVEG----LLEGVNTEPVKELVDSVDIPVIASGGVTTLDDLRALKEAGA 216 Query: 360 ACVMIGSLL 368 A V++GS L Sbjct: 217 AGVVVGSAL 225 >gnl|CDD|182933 PRK11057, PRK11057, ATP-dependent DNA helicase RecQ; Provisional. Length = 607 Score = 28.5 bits (64), Expect = 3.6 Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 7/54 (12%) Query: 241 LFDVNVDLVVVDTAHGHSQKVLD------AVVQIKKNFPSLLVMAGNIATAEGA 288 L N L+ VD AH SQ D A+ Q+++ FP+L MA ATA+ Sbjct: 135 LAHWNPALLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALT-ATADDT 187 >gnl|CDD|181755 PRK09283, PRK09283, delta-aminolevulinic acid dehydratase; Validated. Length = 323 Score = 28.5 bits (65), Expect = 4.0 Identities = 18/61 (29%), Positives = 25/61 (40%), Gaps = 25/61 (40%) Query: 264 AVVQIKKNFPSLLVMA------------------GNI---AT----AEGALALIDAGADI 298 A+ IKK FP L V+ G + T A+ AL+ +AGADI Sbjct: 102 AIRAIKKAFPELGVITDVCLDEYTSHGHCGILEDGYVDNDETLELLAKQALSQAEAGADI 161 Query: 299 I 299 + Sbjct: 162 V 162 >gnl|CDD|130830 TIGR01769, GGGP, geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum. Length = 205 Score = 28.6 bits (64), Expect = 4.0 Identities = 13/40 (32%), Positives = 21/40 (52%) Query: 263 DAVVQIKKNFPSLLVMAGNIATAEGALALIDAGADIIKVG 302 + + +KK L++ G I + E A ++ AGAD I G Sbjct: 166 ETISLVKKASGIPLIVGGGIRSPEIAYEIVLAGADAIVTG 205 >gnl|CDD|178042 PLN02422, PLN02422, dephospho-CoA kinase. Length = 232 Score = 28.6 bits (64), Expect = 4.1 Identities = 20/92 (21%), Positives = 40/92 (43%), Gaps = 5/92 (5%) Query: 107 PYATLADALALMKKYSISGIPVVESDVGKLVGI----LTNRDVRFASNAQQAVGELMTRN 162 PY + ++K + + G V+ D+ L T V + + + LM R+ Sbjct: 89 PYISSGIFWEILKLW-LKGCKVIVLDIPLLFETKMDKWTKPVVVVWVDPETQLERLMARD 147 Query: 163 LITVKKTVNLENAKALLHQHRIEKLLVVDDDG 194 ++ ++ N NA+ L R + +V+D+ G Sbjct: 148 GLSEEQARNRINAQMPLDWKRSKADIVIDNSG 179 >gnl|CDD|179992 PRK05286, PRK05286, dihydroorotate dehydrogenase 2; Reviewed. Length = 344 Score = 28.2 bits (64), Expect = 4.4 Identities = 10/33 (30%), Positives = 17/33 (51%), Gaps = 2/33 (6%) Query: 267 QIKKNFPSLLVMAGNIATAEGALALIDAGADII 299 ++ P ++ G I +AE A I AGA ++ Sbjct: 285 ELGGRLP--IIGVGGIDSAEDAYEKIRAGASLV 315 >gnl|CDD|179344 PRK01862, PRK01862, putative voltage-gated ClC-type chloride channel ClcB; Provisional. Length = 574 Score = 28.2 bits (63), Expect = 4.8 Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 5/62 (8%) Query: 161 RNLITVKKTV-----NLENAKALLHQHRIEKLLVVDDDGCCIGLITVKDIERSQLNPNAT 215 R LI +TV ++ + + ++ ++ L VVDDDG G + +KDI L+ T Sbjct: 450 RELIQPAQTVVPPTASVADMTRVFLEYPVKYLYVVDDDGRFRGAVALKDITSDLLDKRDT 509 Query: 216 KD 217 D Sbjct: 510 TD 511 >gnl|CDD|179762 PRK04169, PRK04169, geranylgeranylglyceryl phosphate synthase-like protein; Reviewed. Length = 232 Score = 27.9 bits (63), Expect = 5.6 Identities = 13/27 (48%), Positives = 16/27 (59%) Query: 276 LVMAGNIATAEGALALIDAGADIIKVG 302 L+ G I + E A L+ AGAD I VG Sbjct: 187 LIYGGGIRSPEQARELMAAGADTIVVG 213 >gnl|CDD|179386 PRK02227, PRK02227, hypothetical protein; Provisional. Length = 238 Score = 28.0 bits (63), Expect = 5.9 Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 2/29 (6%) Query: 279 AGNIATAEGALALIDAGADIIKVGIGPGS 307 G I+ A AL GAD +KVG+ G Sbjct: 66 PGTISLA--ALGAAATGADYVKVGLYGGK 92 >gnl|CDD|129155 TIGR00044, TIGR00044, pyridoxal phosphate enzyme, YggS family. Members of this protein family include YggS from Escherichia coli and YBL036C, an uncharacterized pyridoxal protein of Saccharomyces cerevisiae. Length = 229 Score = 27.9 bits (62), Expect = 5.9 Identities = 11/23 (47%), Positives = 15/23 (65%) Query: 348 SGDIAKAIAAGSACVMIGSLLAG 370 S D +AIAAG+ V IG+ + G Sbjct: 205 SDDFEEAIAAGATMVRIGTAIFG 227 >gnl|CDD|181033 PRK07565, PRK07565, dihydroorotate dehydrogenase 2; Reviewed. Length = 334 Score = 27.9 bits (63), Expect = 7.0 Identities = 13/35 (37%), Positives = 19/35 (54%) Query: 334 RAGVAIVADGGIRFSGDIAKAIAAGSACVMIGSLL 368 R G + A G+ + D+ K + AG+ VMI S L Sbjct: 237 RVGADLAATTGVHDAEDVIKMLLAGADVVMIASAL 271 >gnl|CDD|181722 PRK09243, PRK09243, nicotinate phosphoribosyltransferase; Validated. Length = 464 Score = 27.8 bits (63), Expect = 7.1 Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 10/65 (15%) Query: 290 ALIDAGADIIKVGIGPGSICTTRVVTGVGCPQLSAIMSVVEVAERAGVAIVADGGIRFSG 349 +L GA I G+G T++VTG P L + +V + G+ I+ S Sbjct: 302 SLKLQGAPIDGFGVG------TKLVTGSDAPALGGVYKLVAIEGEGGMIPK----IKLSN 351 Query: 350 DIAKA 354 K Sbjct: 352 SPEKV 356 >gnl|CDD|161723 TIGR00126, deoC, deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria. Length = 211 Score = 27.4 bits (61), Expect = 9.6 Identities = 11/21 (52%), Positives = 16/21 (76%) Query: 279 AGNIATAEGALALIDAGADII 299 +G + TAE A+A+I+AGA I Sbjct: 181 SGGVRTAEDAIAMIEAGASRI 201 >gnl|CDD|162523 TIGR01768, GGGP-family, geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired. Length = 223 Score = 27.1 bits (60), Expect = 9.8 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%) Query: 263 DAVVQIKKNFPS-LLVMAGNIATAEGALALIDAGADIIKVG 302 + V ++KK L + G I + E A + +AGAD I G Sbjct: 168 ELVAEVKKVLDKARLFVGGGIRSVEKAREMAEAGADTIVTG 208 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.318 0.134 0.371 Gapped Lambda K H 0.267 0.0803 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 7,947,027 Number of extensions: 535750 Number of successful extensions: 1553 Number of sequences better than 10.0: 1 Number of HSP's gapped: 1488 Number of HSP's successfully gapped: 115 Length of query: 493 Length of database: 5,994,473 Length adjustment: 97 Effective length of query: 396 Effective length of database: 3,898,497 Effective search space: 1543804812 Effective search space used: 1543804812 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 59 (26.4 bits)