BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780889|ref|YP_003065302.1| inosine 5'-monophosphate
dehydrogenase [Candidatus Liberibacter asiaticus str. psy62]
         (493 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780889|ref|YP_003065302.1| inosine 5'-monophosphate dehydrogenase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 493

 Score =  995 bits (2573), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 493/493 (100%), Positives = 493/493 (100%)

Query: 1   MARIIENNVGGVALTFDDVLLRPEFSNVLPRDIDISTRIAKDFTLNLPIMSAAMDQVTDS 60
           MARIIENNVGGVALTFDDVLLRPEFSNVLPRDIDISTRIAKDFTLNLPIMSAAMDQVTDS
Sbjct: 1   MARIIENNVGGVALTFDDVLLRPEFSNVLPRDIDISTRIAKDFTLNLPIMSAAMDQVTDS 60

Query: 61  RLAIAMAQAGGLGVIHRNFSPSEQVAQVHQVKKFESGMVVNPVTISPYATLADALALMKK 120
           RLAIAMAQAGGLGVIHRNFSPSEQVAQVHQVKKFESGMVVNPVTISPYATLADALALMKK
Sbjct: 61  RLAIAMAQAGGLGVIHRNFSPSEQVAQVHQVKKFESGMVVNPVTISPYATLADALALMKK 120

Query: 121 YSISGIPVVESDVGKLVGILTNRDVRFASNAQQAVGELMTRNLITVKKTVNLENAKALLH 180
           YSISGIPVVESDVGKLVGILTNRDVRFASNAQQAVGELMTRNLITVKKTVNLENAKALLH
Sbjct: 121 YSISGIPVVESDVGKLVGILTNRDVRFASNAQQAVGELMTRNLITVKKTVNLENAKALLH 180

Query: 181 QHRIEKLLVVDDDGCCIGLITVKDIERSQLNPNATKDSKGRLRVAAAVSVAKDIADRVGP 240
           QHRIEKLLVVDDDGCCIGLITVKDIERSQLNPNATKDSKGRLRVAAAVSVAKDIADRVGP
Sbjct: 181 QHRIEKLLVVDDDGCCIGLITVKDIERSQLNPNATKDSKGRLRVAAAVSVAKDIADRVGP 240

Query: 241 LFDVNVDLVVVDTAHGHSQKVLDAVVQIKKNFPSLLVMAGNIATAEGALALIDAGADIIK 300
           LFDVNVDLVVVDTAHGHSQKVLDAVVQIKKNFPSLLVMAGNIATAEGALALIDAGADIIK
Sbjct: 241 LFDVNVDLVVVDTAHGHSQKVLDAVVQIKKNFPSLLVMAGNIATAEGALALIDAGADIIK 300

Query: 301 VGIGPGSICTTRVVTGVGCPQLSAIMSVVEVAERAGVAIVADGGIRFSGDIAKAIAAGSA 360
           VGIGPGSICTTRVVTGVGCPQLSAIMSVVEVAERAGVAIVADGGIRFSGDIAKAIAAGSA
Sbjct: 301 VGIGPGSICTTRVVTGVGCPQLSAIMSVVEVAERAGVAIVADGGIRFSGDIAKAIAAGSA 360

Query: 361 CVMIGSLLAGTDESPGDIFLYQGRSFKSYRGMGSVAAMERGSSARYSQDGVTDVLKLVPE 420
           CVMIGSLLAGTDESPGDIFLYQGRSFKSYRGMGSVAAMERGSSARYSQDGVTDVLKLVPE
Sbjct: 361 CVMIGSLLAGTDESPGDIFLYQGRSFKSYRGMGSVAAMERGSSARYSQDGVTDVLKLVPE 420

Query: 421 GIEGRVPYKGPIASVLHQMSGGLKSSMGYVGASNIEEFQKKANFIRVSVAGLRESHVHDV 480
           GIEGRVPYKGPIASVLHQMSGGLKSSMGYVGASNIEEFQKKANFIRVSVAGLRESHVHDV
Sbjct: 421 GIEGRVPYKGPIASVLHQMSGGLKSSMGYVGASNIEEFQKKANFIRVSVAGLRESHVHDV 480

Query: 481 KITRESPNYSETI 493
           KITRESPNYSETI
Sbjct: 481 KITRESPNYSETI 493


>gi|255764505|ref|YP_003065248.2| polysialic acid capsule expression protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 341

 Score = 38.1 bits (87), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 75/174 (43%), Gaps = 25/174 (14%)

Query: 48  PIMSAAMDQVTDSRLAIAMAQAGGLGVIHRNFSPSEQVAQVHQVKKF-----------ES 96
           P  SA M       LAIA+ ++       RNFS ++    +H   K             S
Sbjct: 175 PTTSAIMQLAIGDALAIALLES-------RNFSENDFYV-LHPGGKLGTLFVCASDVMHS 226

Query: 97  GMVVNPVTISPYATLADALALMKKYSISGIPVVESDVGKLVGILTNRDV--RFASNAQQ- 153
           G  +  V I     L DA+ ++ +     + VV+    KL GI+T  D+   F  +    
Sbjct: 227 GDSIPLVKIG--CPLIDAITILSEKRFGCVAVVDEG-QKLKGIITEGDIFRNFHKDLNTL 283

Query: 154 AVGELMTRNLITVKKTVNLENAKALLHQHRIEKLLVVDDDGCCIGLITVKDIER 207
           +V ++M +N   + +   L  A  LL QH I  L+VVDD    IG++   D+ R
Sbjct: 284 SVEDVMIKNPKVILEDTLLTVAMQLLRQHNISVLMVVDDCQKAIGIVHFLDLLR 337


>gi|254780426|ref|YP_003064839.1| hemolysin protein [Candidatus Liberibacter asiaticus str. psy62]
          Length = 320

 Score = 35.8 bits (81), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 36/140 (25%), Positives = 69/140 (49%), Gaps = 14/140 (10%)

Query: 109 ATLADALALMKKYSISGIPVVESDVGKLVGILTNRDV------RFAS------NAQQAVG 156
           AT+ +A+ + +KY  S +PV ++ +    G++  RDV       +A       N Q +  
Sbjct: 106 ATVYEAMLMFEKYGRSWMPVYKNSLDNPRGMVHMRDVISYISHMYAKTNNINLNIQLSES 165

Query: 157 ELMTRNLITVKKTVNLENAKALLHQHRIEKLLVVDDDGCCIGLITVKDIERSQLNPNATK 216
            L+ +N++ V  ++ + +    + + RI   LV+D+ G   GL++ +DI  S L  + T 
Sbjct: 166 NLI-KNILFVPSSMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDI-VSVLMRDITS 223

Query: 217 DSKGRLRVAAAVSVAKDIAD 236
           +   +  + +AVS    I D
Sbjct: 224 EHHSKKSMISAVSDNTFIVD 243


>gi|254780300|ref|YP_003064713.1| aspartate carbamoyltransferase catalytic subunit [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 316

 Score = 26.2 bits (56), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 3/46 (6%)

Query: 396 AAMERGSSARYSQDGVTDVLKLVPEGIEGRVPYKGPIASVLHQMSG 441
           +AM++G +     D +  +  L P  I  R PY G + S++H++ G
Sbjct: 83  SAMKKGENI---ADTIATLNALRPNIIVIRHPYSGAVNSLMHKIKG 125


>gi|254780724|ref|YP_003065137.1| component of type IV pilus [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 483

 Score = 25.8 bits (55), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 4/52 (7%)

Query: 408 QDGVTDVLKLVPEGI-EGRVPYKGP-IASVLHQMSGGLKSSMGYVGASNIEE 457
           +D V + L++ PE I  G V  +GP +  +L  M+ G   SMG + A+N  E
Sbjct: 315 RDLVKNCLRMRPERIILGEV--RGPEVLDLLQAMNTGHDGSMGTIHANNARE 364


>gi|254780434|ref|YP_003064847.1| dihydroorotate dehydrogenase 2 [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 362

 Score = 25.0 bits (53), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 13/47 (27%), Positives = 26/47 (55%), Gaps = 2/47 (4%)

Query: 322 LSAIMSVVEVAERAG--VAIVADGGIRFSGDIAKAIAAGSACVMIGS 366
           L + +++ ++ +R G  +AI+  GGI  + D    I AG+  + + S
Sbjct: 271 LKSTIALAKIRQRVGPKIAIIGTGGISSTKDALDKIMAGANLIQLYS 317


>gi|254780279|ref|YP_003064692.1| dihydrodipicolinate reductase [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 280

 Score = 24.6 bits (52), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)

Query: 124 SGIPVVESDVGKLVGILTNRDVRFASNAQQAV 155
           SG P++  DVG  VGI +   ++F+ N   A+
Sbjct: 39  SGSPLIGQDVGNFVGI-SPMGIKFSDNLAMAI 69


>gi|254780138|ref|YP_003064551.1| ABC transporter [Candidatus Liberibacter asiaticus str. psy62]
          Length = 373

 Score = 24.6 bits (52), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 10/65 (15%)

Query: 280 GNIATAEGALALIDAGADIIKVGIGPGSICTTRVVTGVGCPQLSAIMSVVEVAERAGVAI 339
           G +   +GA  L   GA+I  + +   SI   R        ++  +++ V +A R+G AI
Sbjct: 179 GAVIAQQGAFQLSQFGAEIFSIDLM--SILQLR--------EIGVLLTAVMIAGRSGSAI 228

Query: 340 VADGG 344
           VA+ G
Sbjct: 229 VAEIG 233


>gi|255764472|ref|YP_003064841.2| 2-methylthioadenine synthetase (miaB-like) protein [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 469

 Score = 24.3 bits (51), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 13/72 (18%)

Query: 245 NVDLVVVDTAH---GHSQKVLDAV--------VQIKKNFPSLLVMAGNIATAEGALALID 293
           + DL+V++T H     ++KV   +         +IK+    L+V+AG +A AEG   L  
Sbjct: 61  DADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEIL-- 118

Query: 294 AGADIIKVGIGP 305
             + I+ V +GP
Sbjct: 119 RRSPIVNVVVGP 130


>gi|254781043|ref|YP_003065456.1| succinate dehydrogenase flavoprotein subunit [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 611

 Score = 23.9 bits (50), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 5/16 (31%), Positives = 13/16 (81%)

Query: 188 LVVDDDGCCIGLITVK 203
           L+++ +GCC+G++  +
Sbjct: 180 LIINSEGCCVGVVAWQ 195


>gi|254781163|ref|YP_003065576.1| hypothetical protein CLIBASIA_05350 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 214

 Score = 23.5 bits (49), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 15/61 (24%), Positives = 29/61 (47%), Gaps = 6/61 (9%)

Query: 83  EQVAQVHQVKKFESGMVVNPVTISPYATLADAL-ALMKKYSISGIPVVESDVGKLVGILT 141
           E+++Q +  K F      N    + +    D +  ++ +Y I GIP+ + D  K+   LT
Sbjct: 131 EKISQKNVEKDF-----FNSKFFTHFKEYIDEVDKILMRYGIEGIPLTDFDHEKIKSYLT 185

Query: 142 N 142
           +
Sbjct: 186 H 186


>gi|254780280|ref|YP_003064693.1| glucokinase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 348

 Score = 23.5 bits (49), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 1/57 (1%)

Query: 137 VGILTNRDVR-FASNAQQAVGELMTRNLITVKKTVNLENAKALLHQHRIEKLLVVDD 192
           +G  T RD   F    ++A G L   NL++ K  VN+  A  +       K+L   D
Sbjct: 178 IGPSTQRDYEIFPHLTERAEGRLSAENLLSGKGLVNIYKALCIADGFESNKVLSSKD 234


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.318    0.134    0.371 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 288,882
Number of Sequences: 1233
Number of extensions: 11602
Number of successful extensions: 48
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 39
Number of HSP's gapped (non-prelim): 17
length of query: 493
length of database: 328,796
effective HSP length: 78
effective length of query: 415
effective length of database: 232,622
effective search space: 96538130
effective search space used: 96538130
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 40 (20.0 bits)