BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780889|ref|YP_003065302.1| inosine 5'-monophosphate dehydrogenase [Candidatus Liberibacter asiaticus str. psy62] (493 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780889|ref|YP_003065302.1| inosine 5'-monophosphate dehydrogenase [Candidatus Liberibacter asiaticus str. psy62] Length = 493 Score = 995 bits (2573), Expect = 0.0, Method: Compositional matrix adjust. Identities = 493/493 (100%), Positives = 493/493 (100%) Query: 1 MARIIENNVGGVALTFDDVLLRPEFSNVLPRDIDISTRIAKDFTLNLPIMSAAMDQVTDS 60 MARIIENNVGGVALTFDDVLLRPEFSNVLPRDIDISTRIAKDFTLNLPIMSAAMDQVTDS Sbjct: 1 MARIIENNVGGVALTFDDVLLRPEFSNVLPRDIDISTRIAKDFTLNLPIMSAAMDQVTDS 60 Query: 61 RLAIAMAQAGGLGVIHRNFSPSEQVAQVHQVKKFESGMVVNPVTISPYATLADALALMKK 120 RLAIAMAQAGGLGVIHRNFSPSEQVAQVHQVKKFESGMVVNPVTISPYATLADALALMKK Sbjct: 61 RLAIAMAQAGGLGVIHRNFSPSEQVAQVHQVKKFESGMVVNPVTISPYATLADALALMKK 120 Query: 121 YSISGIPVVESDVGKLVGILTNRDVRFASNAQQAVGELMTRNLITVKKTVNLENAKALLH 180 YSISGIPVVESDVGKLVGILTNRDVRFASNAQQAVGELMTRNLITVKKTVNLENAKALLH Sbjct: 121 YSISGIPVVESDVGKLVGILTNRDVRFASNAQQAVGELMTRNLITVKKTVNLENAKALLH 180 Query: 181 QHRIEKLLVVDDDGCCIGLITVKDIERSQLNPNATKDSKGRLRVAAAVSVAKDIADRVGP 240 QHRIEKLLVVDDDGCCIGLITVKDIERSQLNPNATKDSKGRLRVAAAVSVAKDIADRVGP Sbjct: 181 QHRIEKLLVVDDDGCCIGLITVKDIERSQLNPNATKDSKGRLRVAAAVSVAKDIADRVGP 240 Query: 241 LFDVNVDLVVVDTAHGHSQKVLDAVVQIKKNFPSLLVMAGNIATAEGALALIDAGADIIK 300 LFDVNVDLVVVDTAHGHSQKVLDAVVQIKKNFPSLLVMAGNIATAEGALALIDAGADIIK Sbjct: 241 LFDVNVDLVVVDTAHGHSQKVLDAVVQIKKNFPSLLVMAGNIATAEGALALIDAGADIIK 300 Query: 301 VGIGPGSICTTRVVTGVGCPQLSAIMSVVEVAERAGVAIVADGGIRFSGDIAKAIAAGSA 360 VGIGPGSICTTRVVTGVGCPQLSAIMSVVEVAERAGVAIVADGGIRFSGDIAKAIAAGSA Sbjct: 301 VGIGPGSICTTRVVTGVGCPQLSAIMSVVEVAERAGVAIVADGGIRFSGDIAKAIAAGSA 360 Query: 361 CVMIGSLLAGTDESPGDIFLYQGRSFKSYRGMGSVAAMERGSSARYSQDGVTDVLKLVPE 420 CVMIGSLLAGTDESPGDIFLYQGRSFKSYRGMGSVAAMERGSSARYSQDGVTDVLKLVPE Sbjct: 361 CVMIGSLLAGTDESPGDIFLYQGRSFKSYRGMGSVAAMERGSSARYSQDGVTDVLKLVPE 420 Query: 421 GIEGRVPYKGPIASVLHQMSGGLKSSMGYVGASNIEEFQKKANFIRVSVAGLRESHVHDV 480 GIEGRVPYKGPIASVLHQMSGGLKSSMGYVGASNIEEFQKKANFIRVSVAGLRESHVHDV Sbjct: 421 GIEGRVPYKGPIASVLHQMSGGLKSSMGYVGASNIEEFQKKANFIRVSVAGLRESHVHDV 480 Query: 481 KITRESPNYSETI 493 KITRESPNYSETI Sbjct: 481 KITRESPNYSETI 493 >gi|255764505|ref|YP_003065248.2| polysialic acid capsule expression protein [Candidatus Liberibacter asiaticus str. psy62] Length = 341 Score = 38.1 bits (87), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 49/174 (28%), Positives = 75/174 (43%), Gaps = 25/174 (14%) Query: 48 PIMSAAMDQVTDSRLAIAMAQAGGLGVIHRNFSPSEQVAQVHQVKKF-----------ES 96 P SA M LAIA+ ++ RNFS ++ +H K S Sbjct: 175 PTTSAIMQLAIGDALAIALLES-------RNFSENDFYV-LHPGGKLGTLFVCASDVMHS 226 Query: 97 GMVVNPVTISPYATLADALALMKKYSISGIPVVESDVGKLVGILTNRDV--RFASNAQQ- 153 G + V I L DA+ ++ + + VV+ KL GI+T D+ F + Sbjct: 227 GDSIPLVKIG--CPLIDAITILSEKRFGCVAVVDEG-QKLKGIITEGDIFRNFHKDLNTL 283 Query: 154 AVGELMTRNLITVKKTVNLENAKALLHQHRIEKLLVVDDDGCCIGLITVKDIER 207 +V ++M +N + + L A LL QH I L+VVDD IG++ D+ R Sbjct: 284 SVEDVMIKNPKVILEDTLLTVAMQLLRQHNISVLMVVDDCQKAIGIVHFLDLLR 337 >gi|254780426|ref|YP_003064839.1| hemolysin protein [Candidatus Liberibacter asiaticus str. psy62] Length = 320 Score = 35.8 bits (81), Expect = 0.001, Method: Compositional matrix adjust. Identities = 36/140 (25%), Positives = 69/140 (49%), Gaps = 14/140 (10%) Query: 109 ATLADALALMKKYSISGIPVVESDVGKLVGILTNRDV------RFAS------NAQQAVG 156 AT+ +A+ + +KY S +PV ++ + G++ RDV +A N Q + Sbjct: 106 ATVYEAMLMFEKYGRSWMPVYKNSLDNPRGMVHMRDVISYISHMYAKTNNINLNIQLSES 165 Query: 157 ELMTRNLITVKKTVNLENAKALLHQHRIEKLLVVDDDGCCIGLITVKDIERSQLNPNATK 216 L+ +N++ V ++ + + + + RI LV+D+ G GL++ +DI S L + T Sbjct: 166 NLI-KNILFVPSSMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDI-VSVLMRDITS 223 Query: 217 DSKGRLRVAAAVSVAKDIAD 236 + + + +AVS I D Sbjct: 224 EHHSKKSMISAVSDNTFIVD 243 >gi|254780300|ref|YP_003064713.1| aspartate carbamoyltransferase catalytic subunit [Candidatus Liberibacter asiaticus str. psy62] Length = 316 Score = 26.2 bits (56), Expect = 1.2, Method: Compositional matrix adjust. Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 3/46 (6%) Query: 396 AAMERGSSARYSQDGVTDVLKLVPEGIEGRVPYKGPIASVLHQMSG 441 +AM++G + D + + L P I R PY G + S++H++ G Sbjct: 83 SAMKKGENI---ADTIATLNALRPNIIVIRHPYSGAVNSLMHKIKG 125 >gi|254780724|ref|YP_003065137.1| component of type IV pilus [Candidatus Liberibacter asiaticus str. psy62] Length = 483 Score = 25.8 bits (55), Expect = 1.5, Method: Compositional matrix adjust. Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 4/52 (7%) Query: 408 QDGVTDVLKLVPEGI-EGRVPYKGP-IASVLHQMSGGLKSSMGYVGASNIEE 457 +D V + L++ PE I G V +GP + +L M+ G SMG + A+N E Sbjct: 315 RDLVKNCLRMRPERIILGEV--RGPEVLDLLQAMNTGHDGSMGTIHANNARE 364 >gi|254780434|ref|YP_003064847.1| dihydroorotate dehydrogenase 2 [Candidatus Liberibacter asiaticus str. psy62] Length = 362 Score = 25.0 bits (53), Expect = 3.2, Method: Compositional matrix adjust. Identities = 13/47 (27%), Positives = 26/47 (55%), Gaps = 2/47 (4%) Query: 322 LSAIMSVVEVAERAG--VAIVADGGIRFSGDIAKAIAAGSACVMIGS 366 L + +++ ++ +R G +AI+ GGI + D I AG+ + + S Sbjct: 271 LKSTIALAKIRQRVGPKIAIIGTGGISSTKDALDKIMAGANLIQLYS 317 >gi|254780279|ref|YP_003064692.1| dihydrodipicolinate reductase [Candidatus Liberibacter asiaticus str. psy62] Length = 280 Score = 24.6 bits (52), Expect = 3.3, Method: Compositional matrix adjust. Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%) Query: 124 SGIPVVESDVGKLVGILTNRDVRFASNAQQAV 155 SG P++ DVG VGI + ++F+ N A+ Sbjct: 39 SGSPLIGQDVGNFVGI-SPMGIKFSDNLAMAI 69 >gi|254780138|ref|YP_003064551.1| ABC transporter [Candidatus Liberibacter asiaticus str. psy62] Length = 373 Score = 24.6 bits (52), Expect = 3.5, Method: Compositional matrix adjust. Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 10/65 (15%) Query: 280 GNIATAEGALALIDAGADIIKVGIGPGSICTTRVVTGVGCPQLSAIMSVVEVAERAGVAI 339 G + +GA L GA+I + + SI R ++ +++ V +A R+G AI Sbjct: 179 GAVIAQQGAFQLSQFGAEIFSIDLM--SILQLR--------EIGVLLTAVMIAGRSGSAI 228 Query: 340 VADGG 344 VA+ G Sbjct: 229 VAEIG 233 >gi|255764472|ref|YP_003064841.2| 2-methylthioadenine synthetase (miaB-like) protein [Candidatus Liberibacter asiaticus str. psy62] Length = 469 Score = 24.3 bits (51), Expect = 4.4, Method: Compositional matrix adjust. Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 13/72 (18%) Query: 245 NVDLVVVDTAH---GHSQKVLDAV--------VQIKKNFPSLLVMAGNIATAEGALALID 293 + DL+V++T H ++KV + +IK+ L+V+AG +A AEG L Sbjct: 61 DADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEIL-- 118 Query: 294 AGADIIKVGIGP 305 + I+ V +GP Sbjct: 119 RRSPIVNVVVGP 130 >gi|254781043|ref|YP_003065456.1| succinate dehydrogenase flavoprotein subunit [Candidatus Liberibacter asiaticus str. psy62] Length = 611 Score = 23.9 bits (50), Expect = 6.3, Method: Compositional matrix adjust. Identities = 5/16 (31%), Positives = 13/16 (81%) Query: 188 LVVDDDGCCIGLITVK 203 L+++ +GCC+G++ + Sbjct: 180 LIINSEGCCVGVVAWQ 195 >gi|254781163|ref|YP_003065576.1| hypothetical protein CLIBASIA_05350 [Candidatus Liberibacter asiaticus str. psy62] Length = 214 Score = 23.5 bits (49), Expect = 7.4, Method: Compositional matrix adjust. Identities = 15/61 (24%), Positives = 29/61 (47%), Gaps = 6/61 (9%) Query: 83 EQVAQVHQVKKFESGMVVNPVTISPYATLADAL-ALMKKYSISGIPVVESDVGKLVGILT 141 E+++Q + K F N + + D + ++ +Y I GIP+ + D K+ LT Sbjct: 131 EKISQKNVEKDF-----FNSKFFTHFKEYIDEVDKILMRYGIEGIPLTDFDHEKIKSYLT 185 Query: 142 N 142 + Sbjct: 186 H 186 >gi|254780280|ref|YP_003064693.1| glucokinase [Candidatus Liberibacter asiaticus str. psy62] Length = 348 Score = 23.5 bits (49), Expect = 9.0, Method: Compositional matrix adjust. Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 1/57 (1%) Query: 137 VGILTNRDVR-FASNAQQAVGELMTRNLITVKKTVNLENAKALLHQHRIEKLLVVDD 192 +G T RD F ++A G L NL++ K VN+ A + K+L D Sbjct: 178 IGPSTQRDYEIFPHLTERAEGRLSAENLLSGKGLVNIYKALCIADGFESNKVLSSKD 234 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.318 0.134 0.371 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 288,882 Number of Sequences: 1233 Number of extensions: 11602 Number of successful extensions: 48 Number of sequences better than 100.0: 16 Number of HSP's better than 100.0 without gapping: 7 Number of HSP's successfully gapped in prelim test: 9 Number of HSP's that attempted gapping in prelim test: 39 Number of HSP's gapped (non-prelim): 17 length of query: 493 length of database: 328,796 effective HSP length: 78 effective length of query: 415 effective length of database: 232,622 effective search space: 96538130 effective search space used: 96538130 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 40 (20.0 bits)