Query gi|254780890|ref|YP_003065303.1| hypothetical protein CLIBASIA_03935 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 104 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 13730 Date Wed Jun 1 10:25:11 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780890.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d2qamc2 b.40.4.5 (C:61-124) N- 10.3 12 0.0009 15.9 -1.8 16 54-69 29-44 (64) 2 d1skva_ a.30.5.1 (A:) Hypothet 10.0 51 0.0037 12.6 1.6 10 6-15 5-14 (64) 3 d1rl2a2 b.40.4.5 (A:60-125) N- 6.5 16 0.0012 15.3 -2.5 16 54-69 30-45 (66) 4 d1vqoa2 b.40.4.5 (A:1-90) N-te 5.8 19 0.0014 14.9 -2.5 16 54-69 54-69 (90) 5 d2hfva1 d.58.5.5 (A:23-97) Hyp 5.7 65 0.0047 12.0 0.2 19 71-89 4-22 (75) 6 d2zjra2 b.40.4.5 (A:33-127) N- 5.4 20 0.0015 14.7 -2.5 15 54-68 59-73 (95) 7 d2outa1 a.140.3.2 (A:94-131) U 4.6 73 0.0053 11.7 -0.2 19 48-66 18-36 (38) 8 d2j01d2 b.40.4.5 (D:2-126) N-t 3.0 43 0.0031 13.0 -2.5 14 55-68 91-104 (125) 9 d2gmqa1 b.122.1.11 (A:12-113) 3.0 67 0.0049 11.9 -1.5 24 65-93 30-53 (102) 10 d1gmxa_ c.46.1.3 (A:) Sulfurtr 2.7 1.3E+02 0.0097 10.2 -0.3 39 1-39 22-60 (108) No 1 >d2qamc2 b.40.4.5 (C:61-124) N-terminal domain of ribosomal protein L2 {Escherichia coli [TaxId: 562]} Probab=10.25 E-value=12 Score=15.94 Aligned_cols=16 Identities=38% Similarity=0.868 Sum_probs=12.8 Q ss_pred HHHHHHHHCCCHHHHH Q ss_conf 4424642056357899 Q gi|254780890|r 54 IIALIVFREGEKSLIF 69 (104) Q Consensus 54 iialivfregekslif 69 (104) -|||+.|..|||+.|. T Consensus 29 ~IALv~y~dG~k~Yil 44 (64) T d2qamc2 29 NIALVLYKDGERRYIL 44 (64) T ss_dssp CCBCCCBTTSCCCCBC T ss_pred EEEEEECCCCCEEEEE T ss_conf 5899994799699998 No 2 >d1skva_ a.30.5.1 (A:) Hypothetical protein D-63 {Sulfolobus virus-like particle SSV1 [TaxId: 244589]} Probab=10.00 E-value=51 Score=12.56 Aligned_cols=10 Identities=40% Similarity=0.428 Sum_probs=6.8 Q ss_pred CHHHHHHHHH Q ss_conf 0031232255 Q gi|254780890|r 6 REKEVFLESE 15 (104) Q Consensus 6 rekevflese 15 (104) -|||.|++-. T Consensus 5 ~ekeLfleLD 14 (64) T d1skva_ 5 LEKELFEMLD 14 (64) T ss_dssp HHHHHHHHHH T ss_pred HHHHHHHHHH T ss_conf 1989999986 No 3 >d1rl2a2 b.40.4.5 (A:60-125) N-terminal domain of ribosomal protein L2 {Bacillus stearothermophilus [TaxId: 1422]} Probab=6.48 E-value=16 Score=15.28 Aligned_cols=16 Identities=50% Similarity=0.725 Sum_probs=12.3 Q ss_pred HHHHHHHHCCCHHHHH Q ss_conf 4424642056357899 Q gi|254780890|r 54 IIALIVFREGEKSLIF 69 (104) Q Consensus 54 iialivfregekslif 69 (104) -|||+.|..|+|+.|. T Consensus 30 ~IAlv~y~dG~k~YIL 45 (66) T d1rl2a2 30 NIALINYADGEKRYII 45 (66) T ss_dssp EEEEEEETTSCEEEEE T ss_pred EEEEEECCCCCEEEEE T ss_conf 7999995799199998 No 4 >d1vqoa2 b.40.4.5 (A:1-90) N-terminal domain of ribosomal protein L2 {Archaeon Haloarcula marismortui [TaxId: 2238]} Probab=5.80 E-value=19 Score=14.94 Aligned_cols=16 Identities=31% Similarity=0.725 Sum_probs=12.7 Q ss_pred HHHHHHHHCCCHHHHH Q ss_conf 4424642056357899 Q gi|254780890|r 54 IIALIVFREGEKSLIF 69 (104) Q Consensus 54 iialivfregekslif 69 (104) -|||+.|..|++++|. T Consensus 54 ~iAlv~~~dg~~~yil 69 (90) T d1vqoa2 54 PVAAVEFEDGDRRLIL 69 (90) T ss_dssp EEEEEEETTSCEEEEC T ss_pred EEEEEEECCCCEEEEE T ss_conf 6789994699899997 No 5 >d2hfva1 d.58.5.5 (A:23-97) Hypothetical protein RPA1041 {Rhodopseudomonas palustris [TaxId: 1076]} Probab=5.66 E-value=65 Score=11.96 Aligned_cols=19 Identities=37% Similarity=0.396 Sum_probs=9.7 Q ss_pred HHHCCCCCHHHHHHHHHHH Q ss_conf 9751643303699999999 Q gi|254780890|r 71 LLRTNQKTNSSLTQAIIQE 89 (104) Q Consensus 71 llrtnqktnssltqaiiqe 89 (104) |+|||.-+--|.-+|+.++ T Consensus 4 LlrTnD~v~is~~~aLL~~ 22 (75) T d2hfva1 4 LLRTNDAVLLSAVGALLDG 22 (75) T ss_dssp EEEECCHHHHHHHHHHHHH T ss_pred EEECCCHHHHHHHHHHHHH T ss_conf 1234888899999999735 No 6 >d2zjra2 b.40.4.5 (A:33-127) N-terminal domain of ribosomal protein L2 {Deinococcus radiodurans [TaxId: 1299]} Probab=5.42 E-value=20 Score=14.74 Aligned_cols=15 Identities=47% Similarity=0.738 Sum_probs=12.1 Q ss_pred HHHHHHHHCCCHHHH Q ss_conf 442464205635789 Q gi|254780890|r 54 IIALIVFREGEKSLI 68 (104) Q Consensus 54 iialivfregeksli 68 (104) -|||+.|..||++.| T Consensus 59 ~IALv~y~dG~k~YI 73 (95) T d2zjra2 59 RIALLHYADGEKRYI 73 (95) T ss_dssp CEEEEEETTSCEEEE T ss_pred EEEEEECCCCEEEEE T ss_conf 899999379949999 No 7 >d2outa1 a.140.3.2 (A:94-131) Uncharacterized protein HI1507 in Mu-like prophage FluMu region {Haemophilus influenzae [TaxId: 727]} Probab=4.58 E-value=73 Score=11.69 Aligned_cols=19 Identities=42% Similarity=0.489 Sum_probs=14.3 Q ss_pred EEEHHHHHHHHHHHCCCHH Q ss_conf 0010124424642056357 Q gi|254780890|r 48 YIITARIIALIVFREGEKS 66 (104) Q Consensus 48 yiitariialivfregeks 66 (104) --..|..|||..-..|||| T Consensus 18 satkaelialfapadgeks 36 (38) T d2outa1 18 SATKAELIALFAPADGEKS 36 (38) T ss_dssp SCCSHHHHHHCCSCCSSCC T ss_pred CCHHHHHHHHCCCCCCCCC T ss_conf 3006768874266676536 No 8 >d2j01d2 b.40.4.5 (D:2-126) N-terminal domain of ribosomal protein L2 {Thermus thermophilus [TaxId: 274]} Probab=2.99 E-value=43 Score=12.97 Aligned_cols=14 Identities=50% Similarity=0.814 Sum_probs=0.0 Q ss_pred HHHHHHHCCCHHHH Q ss_conf 42464205635789 Q gi|254780890|r 55 IALIVFREGEKSLI 68 (104) Q Consensus 55 ialivfregeksli 68 (104) |||+.+..|+++.| T Consensus 91 IALv~y~dg~k~YI 104 (125) T d2j01d2 91 IALLHYVDGEKRYI 104 (125) T ss_dssp EEEEEETTSCEEEE T ss_pred EEEEEECCCCEEEE T ss_conf 99999279959999 No 9 >d2gmqa1 b.122.1.11 (A:12-113) Uncharacterized protein PrgU {Enterococcus faecalis [TaxId: 1351]} Probab=2.97 E-value=67 Score=11.88 Aligned_cols=24 Identities=33% Similarity=0.433 Sum_probs=0.0 Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHH Q ss_conf 57899997516433036999999999989 Q gi|254780890|r 65 KSLIFDLLRTNQKTNSSLTQAIIQEIDTL 93 (104) Q Consensus 65 kslifdllrtnqktnssltqaiiqeidtl 93 (104) +.--|.++-.||-|... |||||++ T Consensus 30 ~~~~~E~~~N~QiT~EN-----I~EI~~i 53 (102) T d2gmqa1 30 NTRAMEMWYNKQITEEN-----IQEITTL 53 (102) T ss_dssp HHHHHHHHHHTSSCTTT-----GGGCCEE T ss_pred CCCEEEEHHHCCCCHHH-----CEEEEEE T ss_conf 78067531307688443-----3155677 No 10 >d1gmxa_ c.46.1.3 (A:) Sulfurtransferase GlpE {Escherichia coli [TaxId: 562]} Probab=2.71 E-value=1.3e+02 Score=10.24 Aligned_cols=39 Identities=23% Similarity=0.428 Sum_probs=0.0 Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC Q ss_conf 972640031232255335567758888998510024796 Q gi|254780890|r 1 MFYDSREKEVFLESEVVHNIRLQIEEISAILSKKSRDTP 39 (104) Q Consensus 1 mfydsrekevflesevvhnirlqieeisailskksrdtp 39 (104) .+-|.|..+-|....+..-+.+..+++...+....+|+| T Consensus 22 ~liDvR~~~e~~~ghI~gA~~ip~~~l~~~~~~~~~~~~ 60 (108) T d1gmxa_ 22 VLVDIRDPQSFAMGHAVQAFHLTNDTLGAFMRDNDFDTP 60 (108) T ss_dssp EEEECSCHHHHHHCEETTCEECCHHHHHHHHHHSCTTSC T ss_pred EEEECCCHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCC T ss_conf 999788789987437787521000117887530024676 Done!