BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= gi|254780890|ref|YP_003065303.1| hypothetical protein
CLIBASIA_03935 [Candidatus Liberibacter asiaticus str. psy62]
(104 letters)
Database: nr
14,124,377 sequences; 4,842,793,630 total letters
Searching..................................................done
>gi|254780890|ref|YP_003065303.1| hypothetical protein CLIBASIA_03935 [Candidatus Liberibacter
asiaticus str. psy62]
gi|254040567|gb|ACT57363.1| hypothetical protein CLIBASIA_03935 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 104
Score = 172 bits (437), Expect = 1e-41, Method: Composition-based stats.
Identities = 104/104 (100%), Positives = 104/104 (100%)
Query: 1 MFYDSREKEVFLESEVVHNIRLQIEEISAILSKKSRDTPNQEIRTKIYIITARIIALIVF 60
MFYDSREKEVFLESEVVHNIRLQIEEISAILSKKSRDTPNQEIRTKIYIITARIIALIVF
Sbjct: 1 MFYDSREKEVFLESEVVHNIRLQIEEISAILSKKSRDTPNQEIRTKIYIITARIIALIVF 60
Query: 61 REGEKSLIFDLLRTNQKTNSSLTQAIIQEIDTLQHQCKSIERDS 104
REGEKSLIFDLLRTNQKTNSSLTQAIIQEIDTLQHQCKSIERDS
Sbjct: 61 REGEKSLIFDLLRTNQKTNSSLTQAIIQEIDTLQHQCKSIERDS 104
>gi|315122693|ref|YP_004063182.1| hypothetical protein CKC_04725 [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313496095|gb|ADR52694.1| hypothetical protein CKC_04725 [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 100
Score = 87.4 bits (215), Expect = 5e-16, Method: Composition-based stats.
Identities = 49/98 (50%), Positives = 73/98 (74%)
Query: 5 SREKEVFLESEVVHNIRLQIEEISAILSKKSRDTPNQEIRTKIYIITARIIALIVFREGE 64
S K LES+V+++IRLQIEEI IL+++ ++ ++E+ TK+Y++TARIIAL REG+
Sbjct: 3 STRKNDCLESKVIYSIRLQIEEIFKILTQEKKEISDKELYTKMYLVTARIIALTALREGK 62
Query: 65 KSLIFDLLRTNQKTNSSLTQAIIQEIDTLQHQCKSIER 102
KS IF L+ N+K +S LTQ +QEIDTL++Q I++
Sbjct: 63 KSPIFHYLKKNKKYDSLLTQTTMQEIDTLKYQLTPIKK 100
>gi|332667493|ref|YP_004450281.1| signal transduction histidine kinase [Haliscomenobacter hydrossis
DSM 1100]
gi|332336307|gb|AEE53408.1| signal transduction histidine kinase [Haliscomenobacter hydrossis
DSM 1100]
Length = 609
Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 24/94 (25%), Positives = 50/94 (53%), Gaps = 4/94 (4%)
Query: 5 SREKEVFLESEVVHNIRLQIEEISAILSKKSRDTPNQEIRTKIYIITARIIALI----VF 60
S E+++ L+ E+ H ++ ++ I ++L + D ++ R + +++RI A+ V
Sbjct: 401 SLEQQIMLQGEIHHRVKNNLQVIISLLELQKEDIKDENTRNGLEAMSSRIYAIAAVHDVL 460
Query: 61 REGEKSLIFDLLRTNQKTNSSLTQAIIQEIDTLQ 94
+G++ + D L +K S L QA+ +E T Q
Sbjct: 461 YQGQEGQLVDFLNYTKKLCSHLQQAMAREDSTFQ 494
>gi|149186824|ref|ZP_01865134.1| putative signal transduction histidine kinase with GAF domain
[Erythrobacter sp. SD-21]
gi|148829491|gb|EDL47932.1| putative signal transduction histidine kinase with GAF domain
[Erythrobacter sp. SD-21]
Length = 208
Score = 40.1 bits (92), Expect = 0.092, Method: Composition-based stats.
Identities = 25/89 (28%), Positives = 46/89 (51%), Gaps = 4/89 (4%)
Query: 7 EKEVFLESEVVHNIRLQIEEISAILSKKSRDTPNQEIRTKIYIITARIIALIVFREGEKS 66
E+E L EV H ++ + IS+I++ K+R +P++ RT + I RI +L E +
Sbjct: 11 EREQTLRREVDHRVKNSLASISSIITMKARRSPDEGTRTALEDIGLRIRSLASLHEQLQD 70
Query: 67 L----IFDLLRTNQKTNSSLTQAIIQEID 91
+ DL+ ++ + L Q + Q +D
Sbjct: 71 VGAHQTVDLVVLFERVGTDLRQLLPQGVD 99
>gi|306841654|ref|ZP_07474343.1| Peptidoglycan-binding domain 1 protein [Brucella sp. BO2]
gi|306288267|gb|EFM59647.1| Peptidoglycan-binding domain 1 protein [Brucella sp. BO2]
Length = 946
Score = 40.1 bits (92), Expect = 0.10, Method: Composition-based stats.
Identities = 27/97 (27%), Positives = 50/97 (51%), Gaps = 7/97 (7%)
Query: 3 YDSREKEVFLESEVVHNIRLQIEEISAILSKKSRDTPNQEIRTKIYII-----TARIIAL 57
Y SR +SE +HN+ QI I+ L++ SR+ EIR ++ I + R I L
Sbjct: 261 YASRYGPSSADSEAIHNLEQQIASIAQHLAQPSREL--SEIRPRLDSIERSLHSNREIVL 318
Query: 58 IVFREGEKSLIFDLLRTNQKTNSSLTQAIIQEIDTLQ 94
RE +S++ +L+ K+ +++ Q + ++ L+
Sbjct: 319 DAAREATESVVARMLQHGPKSETAIAQQLAADMKALE 355
>gi|294853408|ref|ZP_06794080.1| peptidoglycan-binding protein [Brucella sp. NVSL 07-0026]
gi|294819063|gb|EFG36063.1| peptidoglycan-binding protein [Brucella sp. NVSL 07-0026]
Length = 978
Score = 40.1 bits (92), Expect = 0.11, Method: Composition-based stats.
Identities = 27/97 (27%), Positives = 50/97 (51%), Gaps = 7/97 (7%)
Query: 3 YDSREKEVFLESEVVHNIRLQIEEISAILSKKSRDTPNQEIRTKIYII-----TARIIAL 57
Y SR +SE +HN+ QI I+ L++ SR+ EIR ++ I + R I L
Sbjct: 293 YASRYGASSADSEAIHNLEQQIASIAQHLAQPSREL--AEIRPRLDSIERSLHSNREIVL 350
Query: 58 IVFREGEKSLIFDLLRTNQKTNSSLTQAIIQEIDTLQ 94
RE +S++ +L+ K+ +++ Q + ++ L+
Sbjct: 351 DAAREATESVVARMLQHGPKSETAIAQQLAADMKALE 387
>gi|265999048|ref|ZP_06111541.1| peptidoglycan binding domain-containing protein [Brucella
melitensis bv. 2 str. 63/9]
gi|263092001|gb|EEZ16298.1| peptidoglycan binding domain-containing protein [Brucella
melitensis bv. 2 str. 63/9]
gi|326410976|gb|ADZ68040.1| peptidoglycan-binding domain 1 protein [Brucella melitensis M28]
gi|326554267|gb|ADZ88906.1| peptidoglycan-binding domain 1 protein [Brucella melitensis M5-90]
Length = 978
Score = 40.1 bits (92), Expect = 0.11, Method: Composition-based stats.
Identities = 27/97 (27%), Positives = 50/97 (51%), Gaps = 7/97 (7%)
Query: 3 YDSREKEVFLESEVVHNIRLQIEEISAILSKKSRDTPNQEIRTKIYII-----TARIIAL 57
Y SR +SE +HN+ QI I+ L++ SR+ EIR ++ I + R I L
Sbjct: 293 YASRYGASSADSEAIHNLEQQIASIAQHLAQPSREL--AEIRPRLDSIERSLHSNREIVL 350
Query: 58 IVFREGEKSLIFDLLRTNQKTNSSLTQAIIQEIDTLQ 94
RE +S++ +L+ K+ +++ Q + ++ L+
Sbjct: 351 DAAREATESVVARMLQHGPKSETAIAQQLAADMKALE 387
>gi|265992772|ref|ZP_06105329.1| peptidoglycan binding domain-containing protein [Brucella
melitensis bv. 3 str. Ether]
gi|262763642|gb|EEZ09674.1| peptidoglycan binding domain-containing protein [Brucella
melitensis bv. 3 str. Ether]
Length = 978
Score = 40.1 bits (92), Expect = 0.11, Method: Composition-based stats.
Identities = 27/97 (27%), Positives = 50/97 (51%), Gaps = 7/97 (7%)
Query: 3 YDSREKEVFLESEVVHNIRLQIEEISAILSKKSRDTPNQEIRTKIYII-----TARIIAL 57
Y SR +SE +HN+ QI I+ L++ SR+ EIR ++ I + R I L
Sbjct: 293 YASRYGASSADSEAIHNLEQQIASIAQHLAQPSREL--AEIRPRLDSIERSLHSNREIVL 350
Query: 58 IVFREGEKSLIFDLLRTNQKTNSSLTQAIIQEIDTLQ 94
RE +S++ +L+ K+ +++ Q + ++ L+
Sbjct: 351 DAAREATESVVARMLQHGPKSETAIAQQLAADMKALE 387
>gi|261750518|ref|ZP_05994227.1| peptidoglycan-binding domain 1 protein [Brucella suis bv. 5 str.
513]
gi|261740271|gb|EEY28197.1| peptidoglycan-binding domain 1 protein [Brucella suis bv. 5 str.
513]
Length = 942
Score = 40.1 bits (92), Expect = 0.11, Method: Composition-based stats.
Identities = 27/97 (27%), Positives = 50/97 (51%), Gaps = 7/97 (7%)
Query: 3 YDSREKEVFLESEVVHNIRLQIEEISAILSKKSRDTPNQEIRTKIYII-----TARIIAL 57
Y SR +SE +HN+ QI I+ L++ SR+ EIR ++ I + R I L
Sbjct: 293 YASRYGASSADSEAIHNLEQQIASIAQHLAQPSREL--AEIRPRLDSIERSLHSNREIVL 350
Query: 58 IVFREGEKSLIFDLLRTNQKTNSSLTQAIIQEIDTLQ 94
RE +S++ +L+ K+ +++ Q + ++ L+
Sbjct: 351 DAAREATESVVARMLQHGPKSETAIAQQLAADMKALE 387
>gi|261322945|ref|ZP_05962142.1| peptidoglycan binding domain-containing protein [Brucella neotomae
5K33]
gi|261298925|gb|EEY02422.1| peptidoglycan binding domain-containing protein [Brucella neotomae
5K33]
Length = 959
Score = 40.1 bits (92), Expect = 0.11, Method: Composition-based stats.
Identities = 27/97 (27%), Positives = 50/97 (51%), Gaps = 7/97 (7%)
Query: 3 YDSREKEVFLESEVVHNIRLQIEEISAILSKKSRDTPNQEIRTKIYII-----TARIIAL 57
Y SR +SE +HN+ QI I+ L++ SR+ EIR ++ I + R I L
Sbjct: 293 YASRYGASSADSEAIHNLEQQIASIAQHLAQPSREL--AEIRPRLDSIERSLHSNREIVL 350
Query: 58 IVFREGEKSLIFDLLRTNQKTNSSLTQAIIQEIDTLQ 94
RE +S++ +L+ K+ +++ Q + ++ L+
Sbjct: 351 DAAREATESVVARMLQHGPKSETAIAQQLAADMKALE 387
>gi|261217417|ref|ZP_05931698.1| peptidoglycan-binding domain 1 protein [Brucella ceti M13/05/1]
gi|261320291|ref|ZP_05959488.1| peptidoglycan-binding domain 1 protein [Brucella ceti M644/93/1]
gi|260922506|gb|EEX89074.1| peptidoglycan-binding domain 1 protein [Brucella ceti M13/05/1]
gi|261292981|gb|EEX96477.1| peptidoglycan-binding domain 1 protein [Brucella ceti M644/93/1]
Length = 978
Score = 40.1 bits (92), Expect = 0.11, Method: Composition-based stats.
Identities = 27/97 (27%), Positives = 50/97 (51%), Gaps = 7/97 (7%)
Query: 3 YDSREKEVFLESEVVHNIRLQIEEISAILSKKSRDTPNQEIRTKIYII-----TARIIAL 57
Y SR +SE +HN+ QI I+ L++ SR+ EIR ++ I + R I L
Sbjct: 293 YASRYGASSADSEAIHNLEQQIASIAQHLAQPSREL--AEIRPRLDSIERSLHSNREIVL 350
Query: 58 IVFREGEKSLIFDLLRTNQKTNSSLTQAIIQEIDTLQ 94
RE +S++ +L+ K+ +++ Q + ++ L+
Sbjct: 351 DAAREATESVVARMLQHGPKSETAIAQQLAADMKALE 387
>gi|261216267|ref|ZP_05930548.1| peptidoglycan-binding domain 1 protein [Brucella abortus bv. 3 str.
Tulya]
gi|260917874|gb|EEX84735.1| peptidoglycan-binding domain 1 protein [Brucella abortus bv. 3 str.
Tulya]
Length = 942
Score = 40.1 bits (92), Expect = 0.11, Method: Composition-based stats.
Identities = 27/97 (27%), Positives = 50/97 (51%), Gaps = 7/97 (7%)
Query: 3 YDSREKEVFLESEVVHNIRLQIEEISAILSKKSRDTPNQEIRTKIYII-----TARIIAL 57
Y SR +SE +HN+ QI I+ L++ SR+ EIR ++ I + R I L
Sbjct: 293 YASRYGASSADSEAIHNLEQQIASIAQHLAQPSREL--AEIRPRLDSIERSLHSNREIVL 350
Query: 58 IVFREGEKSLIFDLLRTNQKTNSSLTQAIIQEIDTLQ 94
RE +S++ +L+ K+ +++ Q + ++ L+
Sbjct: 351 DAAREATESVVARMLQHGPKSETAIAQQLAADMKALE 387
>gi|260756423|ref|ZP_05868771.1| peptidoglycan-binding domain 1 protein [Brucella abortus bv. 6 str.
870]
gi|260676531|gb|EEX63352.1| peptidoglycan-binding domain 1 protein [Brucella abortus bv. 6 str.
870]
Length = 893
Score = 40.1 bits (92), Expect = 0.11, Method: Composition-based stats.
Identities = 27/97 (27%), Positives = 50/97 (51%), Gaps = 7/97 (7%)
Query: 3 YDSREKEVFLESEVVHNIRLQIEEISAILSKKSRDTPNQEIRTKIYII-----TARIIAL 57
Y SR +SE +HN+ QI I+ L++ SR+ EIR ++ I + R I L
Sbjct: 293 YASRYGASSADSEAIHNLEQQIASIAQHLAQPSREL--AEIRPRLDSIERSLHSNREIVL 350
Query: 58 IVFREGEKSLIFDLLRTNQKTNSSLTQAIIQEIDTLQ 94
RE +S++ +L+ K+ +++ Q + ++ L+
Sbjct: 351 DAAREATESVVARMLQHGPKSETAIAQQLAADMKALE 387
>gi|260567915|ref|ZP_05838384.1| peptidoglycan-binding domain 1 protein [Brucella suis bv. 4 str.
40]
gi|261753776|ref|ZP_05997485.1| peptidoglycan-binding domain 1 protein [Brucella suis bv. 3 str.
686]
gi|260154580|gb|EEW89661.1| peptidoglycan-binding domain 1 protein [Brucella suis bv. 4 str.
40]
gi|261743529|gb|EEY31455.1| peptidoglycan-binding domain 1 protein [Brucella suis bv. 3 str.
686]
Length = 942
Score = 40.1 bits (92), Expect = 0.11, Method: Composition-based stats.
Identities = 27/97 (27%), Positives = 50/97 (51%), Gaps = 7/97 (7%)
Query: 3 YDSREKEVFLESEVVHNIRLQIEEISAILSKKSRDTPNQEIRTKIYII-----TARIIAL 57
Y SR +SE +HN+ QI I+ L++ SR+ EIR ++ I + R I L
Sbjct: 293 YASRYGASSADSEAIHNLEQQIASIAQHLAQPSREL--AEIRPRLDSIERSLHSNREIVL 350
Query: 58 IVFREGEKSLIFDLLRTNQKTNSSLTQAIIQEIDTLQ 94
RE +S++ +L+ K+ +++ Q + ++ L+
Sbjct: 351 DAAREATESVVARMLQHGPKSETAIAQQLAADMKALE 387
>gi|260564886|ref|ZP_05835371.1| peptidoglycan-binding domain 1 protein [Brucella melitensis bv. 1
str. 16M]
gi|265990118|ref|ZP_06102675.1| peptidoglycan-binding domain 1 protein [Brucella melitensis bv. 1
str. Rev.1]
gi|260152529|gb|EEW87622.1| peptidoglycan-binding domain 1 protein [Brucella melitensis bv. 1
str. 16M]
gi|263000787|gb|EEZ13477.1| peptidoglycan-binding domain 1 protein [Brucella melitensis bv. 1
str. Rev.1]
Length = 978
Score = 40.1 bits (92), Expect = 0.11, Method: Composition-based stats.
Identities = 27/97 (27%), Positives = 50/97 (51%), Gaps = 7/97 (7%)
Query: 3 YDSREKEVFLESEVVHNIRLQIEEISAILSKKSRDTPNQEIRTKIYII-----TARIIAL 57
Y SR +SE +HN+ QI I+ L++ SR+ EIR ++ I + R I L
Sbjct: 293 YASRYGASSADSEAIHNLEQQIASIAQHLAQPSREL--AEIRPRLDSIERSLHSNREIVL 350
Query: 58 IVFREGEKSLIFDLLRTNQKTNSSLTQAIIQEIDTLQ 94
RE +S++ +L+ K+ +++ Q + ++ L+
Sbjct: 351 DAAREATESVVARMLQHGPKSETAIAQQLAADMKALE 387
>gi|256111259|ref|ZP_05452290.1| Peptidoglycan-binding domain 1 protein [Brucella melitensis bv. 3
str. Ether]
Length = 949
Score = 40.1 bits (92), Expect = 0.11, Method: Composition-based stats.
Identities = 27/97 (27%), Positives = 50/97 (51%), Gaps = 7/97 (7%)
Query: 3 YDSREKEVFLESEVVHNIRLQIEEISAILSKKSRDTPNQEIRTKIYII-----TARIIAL 57
Y SR +SE +HN+ QI I+ L++ SR+ EIR ++ I + R I L
Sbjct: 264 YASRYGASSADSEAIHNLEQQIASIAQHLAQPSREL--AEIRPRLDSIERSLHSNREIVL 321
Query: 58 IVFREGEKSLIFDLLRTNQKTNSSLTQAIIQEIDTLQ 94
RE +S++ +L+ K+ +++ Q + ++ L+
Sbjct: 322 DAAREATESVVARMLQHGPKSETAIAQQLAADMKALE 358
>gi|256059001|ref|ZP_05449212.1| Peptidoglycan-binding domain 1 protein [Brucella neotomae 5K33]
Length = 930
Score = 40.1 bits (92), Expect = 0.11, Method: Composition-based stats.
Identities = 27/97 (27%), Positives = 50/97 (51%), Gaps = 7/97 (7%)
Query: 3 YDSREKEVFLESEVVHNIRLQIEEISAILSKKSRDTPNQEIRTKIYII-----TARIIAL 57
Y SR +SE +HN+ QI I+ L++ SR+ EIR ++ I + R I L
Sbjct: 264 YASRYGASSADSEAIHNLEQQIASIAQHLAQPSREL--AEIRPRLDSIERSLHSNREIVL 321
Query: 58 IVFREGEKSLIFDLLRTNQKTNSSLTQAIIQEIDTLQ 94
RE +S++ +L+ K+ +++ Q + ++ L+
Sbjct: 322 DAAREATESVVARMLQHGPKSETAIAQQLAADMKALE 358
>gi|256043697|ref|ZP_05446621.1| Peptidoglycan-binding domain 1 protein [Brucella melitensis bv. 1
str. Rev.1]
Length = 949
Score = 40.1 bits (92), Expect = 0.11, Method: Composition-based stats.
Identities = 27/97 (27%), Positives = 50/97 (51%), Gaps = 7/97 (7%)
Query: 3 YDSREKEVFLESEVVHNIRLQIEEISAILSKKSRDTPNQEIRTKIYII-----TARIIAL 57
Y SR +SE +HN+ QI I+ L++ SR+ EIR ++ I + R I L
Sbjct: 264 YASRYGASSADSEAIHNLEQQIASIAQHLAQPSREL--AEIRPRLDSIERSLHSNREIVL 321
Query: 58 IVFREGEKSLIFDLLRTNQKTNSSLTQAIIQEIDTLQ 94
RE +S++ +L+ K+ +++ Q + ++ L+
Sbjct: 322 DAAREATESVVARMLQHGPKSETAIAQQLAADMKALE 358
>gi|256015586|ref|YP_003105595.1| putative peptidoglycan-binding protein [Brucella microti CCM 4915]
gi|255998246|gb|ACU49933.1| putative peptidoglycan-binding protein [Brucella microti CCM 4915]
Length = 978
Score = 40.1 bits (92), Expect = 0.11, Method: Composition-based stats.
Identities = 27/97 (27%), Positives = 50/97 (51%), Gaps = 7/97 (7%)
Query: 3 YDSREKEVFLESEVVHNIRLQIEEISAILSKKSRDTPNQEIRTKIYII-----TARIIAL 57
Y SR +SE +HN+ QI I+ L++ SR+ EIR ++ I + R I L
Sbjct: 293 YASRYGASSADSEAIHNLEQQIASIAQHLAQPSREL--AEIRPRLDSIERSLHSNREIVL 350
Query: 58 IVFREGEKSLIFDLLRTNQKTNSSLTQAIIQEIDTLQ 94
RE +S++ +L+ K+ +++ Q + ++ L+
Sbjct: 351 DAAREATESVVARMLQHGPKSETAIAQQLAADMKALE 387
>gi|254712597|ref|ZP_05174408.1| Peptidoglycan-binding domain 1 protein [Brucella ceti M644/93/1]
gi|254715669|ref|ZP_05177480.1| Peptidoglycan-binding domain 1 protein [Brucella ceti M13/05/1]
Length = 949
Score = 40.1 bits (92), Expect = 0.11, Method: Composition-based stats.
Identities = 27/97 (27%), Positives = 50/97 (51%), Gaps = 7/97 (7%)
Query: 3 YDSREKEVFLESEVVHNIRLQIEEISAILSKKSRDTPNQEIRTKIYII-----TARIIAL 57
Y SR +SE +HN+ QI I+ L++ SR+ EIR ++ I + R I L
Sbjct: 264 YASRYGASSADSEAIHNLEQQIASIAQHLAQPSREL--AEIRPRLDSIERSLHSNREIVL 321
Query: 58 IVFREGEKSLIFDLLRTNQKTNSSLTQAIIQEIDTLQ 94
RE +S++ +L+ K+ +++ Q + ++ L+
Sbjct: 322 DAAREATESVVARMLQHGPKSETAIAQQLAADMKALE 358
>gi|254710930|ref|ZP_05172741.1| Peptidoglycan-binding domain 1 protein [Brucella pinnipedialis
B2/94]
gi|256029312|ref|ZP_05442926.1| Peptidoglycan-binding domain 1 protein [Brucella pinnipedialis
M292/94/1]
gi|256157508|ref|ZP_05455426.1| Peptidoglycan-binding domain 1 protein [Brucella ceti M490/95/1]
gi|256253515|ref|ZP_05459051.1| Peptidoglycan-binding domain 1 protein [Brucella ceti B1/94]
gi|260167596|ref|ZP_05754407.1| putative peptidoglycan-binding protein [Brucella sp. F5/99]
Length = 949
Score = 40.1 bits (92), Expect = 0.11, Method: Composition-based stats.
Identities = 27/97 (27%), Positives = 50/97 (51%), Gaps = 7/97 (7%)
Query: 3 YDSREKEVFLESEVVHNIRLQIEEISAILSKKSRDTPNQEIRTKIYII-----TARIIAL 57
Y SR +SE +HN+ QI I+ L++ SR+ EIR ++ I + R I L
Sbjct: 264 YASRYGASSADSEAIHNLEQQIASIAQHLAQPSREL--AEIRPRLDSIERSLHSNREIVL 321
Query: 58 IVFREGEKSLIFDLLRTNQKTNSSLTQAIIQEIDTLQ 94
RE +S++ +L+ K+ +++ Q + ++ L+
Sbjct: 322 DAAREATESVVARMLQHGPKSETAIAQQLAADMKALE 358
>gi|254700036|ref|ZP_05161864.1| localization factor podJL [Brucella suis bv. 5 str. 513]
Length = 913
Score = 40.1 bits (92), Expect = 0.11, Method: Composition-based stats.
Identities = 27/97 (27%), Positives = 50/97 (51%), Gaps = 7/97 (7%)
Query: 3 YDSREKEVFLESEVVHNIRLQIEEISAILSKKSRDTPNQEIRTKIYII-----TARIIAL 57
Y SR +SE +HN+ QI I+ L++ SR+ EIR ++ I + R I L
Sbjct: 264 YASRYGASSADSEAIHNLEQQIASIAQHLAQPSREL--AEIRPRLDSIERSLHSNREIVL 321
Query: 58 IVFREGEKSLIFDLLRTNQKTNSSLTQAIIQEIDTLQ 94
RE +S++ +L+ K+ +++ Q + ++ L+
Sbjct: 322 DAAREATESVVARMLQHGPKSETAIAQQLAADMKALE 358
>gi|254695847|ref|ZP_05157675.1| peptidoglycan binding domain 1:Sel1-like repeat-containing protein
[Brucella abortus bv. 3 str. Tulya]
Length = 913
Score = 40.1 bits (92), Expect = 0.11, Method: Composition-based stats.
Identities = 27/97 (27%), Positives = 50/97 (51%), Gaps = 7/97 (7%)
Query: 3 YDSREKEVFLESEVVHNIRLQIEEISAILSKKSRDTPNQEIRTKIYII-----TARIIAL 57
Y SR +SE +HN+ QI I+ L++ SR+ EIR ++ I + R I L
Sbjct: 264 YASRYGASSADSEAIHNLEQQIASIAQHLAQPSREL--AEIRPRLDSIERSLHSNREIVL 321
Query: 58 IVFREGEKSLIFDLLRTNQKTNSSLTQAIIQEIDTLQ 94
RE +S++ +L+ K+ +++ Q + ++ L+
Sbjct: 322 DAAREATESVVARMLQHGPKSETAIAQQLAADMKALE 358
>gi|254690844|ref|ZP_05154098.1| Sel1-like repeat [Brucella abortus bv. 6 str. 870]
Length = 864
Score = 40.1 bits (92), Expect = 0.11, Method: Composition-based stats.
Identities = 27/97 (27%), Positives = 50/97 (51%), Gaps = 7/97 (7%)
Query: 3 YDSREKEVFLESEVVHNIRLQIEEISAILSKKSRDTPNQEIRTKIYII-----TARIIAL 57
Y SR +SE +HN+ QI I+ L++ SR+ EIR ++ I + R I L
Sbjct: 264 YASRYGASSADSEAIHNLEQQIASIAQHLAQPSREL--AEIRPRLDSIERSLHSNREIVL 321
Query: 58 IVFREGEKSLIFDLLRTNQKTNSSLTQAIIQEIDTLQ 94
RE +S++ +L+ K+ +++ Q + ++ L+
Sbjct: 322 DAAREATESVVARMLQHGPKSETAIAQQLAADMKALE 358
>gi|225686585|ref|YP_002734557.1| peptidoglycan-binding domain 1 protein [Brucella melitensis ATCC
23457]
gi|225642690|gb|ACO02603.1| Peptidoglycan-binding domain 1 protein [Brucella melitensis ATCC
23457]
Length = 949
Score = 40.1 bits (92), Expect = 0.11, Method: Composition-based stats.
Identities = 27/97 (27%), Positives = 50/97 (51%), Gaps = 7/97 (7%)
Query: 3 YDSREKEVFLESEVVHNIRLQIEEISAILSKKSRDTPNQEIRTKIYII-----TARIIAL 57
Y SR +SE +HN+ QI I+ L++ SR+ EIR ++ I + R I L
Sbjct: 264 YASRYGASSADSEAIHNLEQQIASIAQHLAQPSREL--AEIRPRLDSIERSLHSNREIVL 321
Query: 58 IVFREGEKSLIFDLLRTNQKTNSSLTQAIIQEIDTLQ 94
RE +S++ +L+ K+ +++ Q + ++ L+
Sbjct: 322 DAAREATESVVARMLQHGPKSETAIAQQLAADMKALE 358
>gi|225629289|ref|ZP_03787322.1| peptidoglycan-binding protein [Brucella ceti str. Cudo]
gi|261220645|ref|ZP_05934926.1| peptidoglycan binding domain-containing protein [Brucella ceti
B1/94]
gi|261318512|ref|ZP_05957709.1| peptidoglycan-binding domain 1 protein [Brucella pinnipedialis
B2/94]
gi|261757018|ref|ZP_06000727.1| peptidoglycan-binding domain 1 protein [Brucella sp. F5/99]
gi|265986312|ref|ZP_06098869.1| peptidoglycan-binding domain 1 protein [Brucella pinnipedialis
M292/94/1]
gi|265996006|ref|ZP_06108563.1| peptidoglycan-binding domain 1 protein [Brucella ceti M490/95/1]
gi|225615785|gb|EEH12834.1| peptidoglycan-binding protein [Brucella ceti str. Cudo]
gi|260919229|gb|EEX85882.1| peptidoglycan binding domain-containing protein [Brucella ceti
B1/94]
gi|261297735|gb|EEY01232.1| peptidoglycan-binding domain 1 protein [Brucella pinnipedialis
B2/94]
gi|261737002|gb|EEY24998.1| peptidoglycan-binding domain 1 protein [Brucella sp. F5/99]
gi|262550303|gb|EEZ06464.1| peptidoglycan-binding domain 1 protein [Brucella ceti M490/95/1]
gi|264658509|gb|EEZ28770.1| peptidoglycan-binding domain 1 protein [Brucella pinnipedialis
M292/94/1]
Length = 978
Score = 40.1 bits (92), Expect = 0.11, Method: Composition-based stats.
Identities = 27/97 (27%), Positives = 50/97 (51%), Gaps = 7/97 (7%)
Query: 3 YDSREKEVFLESEVVHNIRLQIEEISAILSKKSRDTPNQEIRTKIYII-----TARIIAL 57
Y SR +SE +HN+ QI I+ L++ SR+ EIR ++ I + R I L
Sbjct: 293 YASRYGASSADSEAIHNLEQQIASIAQHLAQPSREL--AEIRPRLDSIERSLHSNREIVL 350
Query: 58 IVFREGEKSLIFDLLRTNQKTNSSLTQAIIQEIDTLQ 94
RE +S++ +L+ K+ +++ Q + ++ L+
Sbjct: 351 DAAREATESVVARMLQHGPKSETAIAQQLAADMKALE 387
>gi|189022598|ref|YP_001932339.1| Sel1-like repeat [Brucella abortus S19]
gi|237816900|ref|ZP_04595892.1| Localization factor podJL [Brucella abortus str. 2308 A]
gi|260544579|ref|ZP_05820400.1| peptidoglycan-binding domain 1 protein [Brucella abortus NCTC 8038]
gi|260759855|ref|ZP_05872203.1| peptidoglycan-binding domain 1 protein [Brucella abortus bv. 4 str.
292]
gi|260763094|ref|ZP_05875426.1| peptidoglycan-binding domain 1 protein [Brucella abortus bv. 2 str.
86/8/59]
gi|260882246|ref|ZP_05893860.1| peptidoglycan binding domain-containing protein [Brucella abortus
bv. 9 str. C68]
gi|297249385|ref|ZP_06933086.1| TPR repeat-containing protein [Brucella abortus bv. 5 str. B3196]
gi|189021172|gb|ACD73893.1| Sel1-like repeat [Brucella abortus S19]
gi|237787713|gb|EEP61929.1| Localization factor podJL [Brucella abortus str. 2308 A]
gi|260097850|gb|EEW81724.1| peptidoglycan-binding domain 1 protein [Brucella abortus NCTC 8038]
gi|260670173|gb|EEX57113.1| peptidoglycan-binding domain 1 protein [Brucella abortus bv. 4 str.
292]
gi|260673515|gb|EEX60336.1| peptidoglycan-binding domain 1 protein [Brucella abortus bv. 2 str.
86/8/59]
gi|260871774|gb|EEX78843.1| peptidoglycan binding domain-containing protein [Brucella abortus
bv. 9 str. C68]
gi|297173254|gb|EFH32618.1| TPR repeat-containing protein [Brucella abortus bv. 5 str. B3196]
Length = 942
Score = 40.1 bits (92), Expect = 0.11, Method: Composition-based stats.
Identities = 27/97 (27%), Positives = 50/97 (51%), Gaps = 7/97 (7%)
Query: 3 YDSREKEVFLESEVVHNIRLQIEEISAILSKKSRDTPNQEIRTKIYII-----TARIIAL 57
Y SR +SE +HN+ QI I+ L++ SR+ EIR ++ I + R I L
Sbjct: 293 YASRYGASSADSEAIHNLEQQIASIAQHLAQPSREL--AEIRPRLDSIERSLHSNREIVL 350
Query: 58 IVFREGEKSLIFDLLRTNQKTNSSLTQAIIQEIDTLQ 94
RE +S++ +L+ K+ +++ Q + ++ L+
Sbjct: 351 DAAREATESVVARMLQHGPKSETAIAQQLAADMKALE 387
>gi|163844942|ref|YP_001622597.1| hypothetical protein BSUIS_B0814 [Brucella suis ATCC 23445]
gi|163675665|gb|ABY39775.1| Hypothetical protein, conserved [Brucella suis ATCC 23445]
Length = 913
Score = 40.1 bits (92), Expect = 0.11, Method: Composition-based stats.
Identities = 27/97 (27%), Positives = 50/97 (51%), Gaps = 7/97 (7%)
Query: 3 YDSREKEVFLESEVVHNIRLQIEEISAILSKKSRDTPNQEIRTKIYII-----TARIIAL 57
Y SR +SE +HN+ QI I+ L++ SR+ EIR ++ I + R I L
Sbjct: 264 YASRYGASSADSEAIHNLEQQIASIAQHLAQPSREL--AEIRPRLDSIERSLHSNREIVL 321
Query: 58 IVFREGEKSLIFDLLRTNQKTNSSLTQAIIQEIDTLQ 94
RE +S++ +L+ K+ +++ Q + ++ L+
Sbjct: 322 DAAREATESVVARMLQHGPKSETAIAQQLAADMKALE 358
>gi|161620880|ref|YP_001594766.1| localization factor podJL [Brucella canis ATCC 23365]
gi|254703156|ref|ZP_05164984.1| localization factor podJL [Brucella suis bv. 3 str. 686]
gi|161337691|gb|ABX63995.1| Localization factor podJL [Brucella canis ATCC 23365]
Length = 913
Score = 40.1 bits (92), Expect = 0.11, Method: Composition-based stats.
Identities = 27/97 (27%), Positives = 50/97 (51%), Gaps = 7/97 (7%)
Query: 3 YDSREKEVFLESEVVHNIRLQIEEISAILSKKSRDTPNQEIRTKIYII-----TARIIAL 57
Y SR +SE +HN+ QI I+ L++ SR+ EIR ++ I + R I L
Sbjct: 264 YASRYGASSADSEAIHNLEQQIASIAQHLAQPSREL--AEIRPRLDSIERSLHSNREIVL 321
Query: 58 IVFREGEKSLIFDLLRTNQKTNSSLTQAIIQEIDTLQ 94
RE +S++ +L+ K+ +++ Q + ++ L+
Sbjct: 322 DAAREATESVVARMLQHGPKSETAIAQQLAADMKALE 358
>gi|23500552|ref|NP_699992.1| peptidoglycan-binding protein [Brucella suis 1330]
gi|23464187|gb|AAN33997.1| peptidoglycan-binding protein, putative [Brucella suis 1330]
Length = 913
Score = 40.1 bits (92), Expect = 0.11, Method: Composition-based stats.
Identities = 27/97 (27%), Positives = 50/97 (51%), Gaps = 7/97 (7%)
Query: 3 YDSREKEVFLESEVVHNIRLQIEEISAILSKKSRDTPNQEIRTKIYII-----TARIIAL 57
Y SR +SE +HN+ QI I+ L++ SR+ EIR ++ I + R I L
Sbjct: 264 YASRYGASSADSEAIHNLEQQIASIAQHLAQPSREL--AEIRPRLDSIERSLHSNREIVL 321
Query: 58 IVFREGEKSLIFDLLRTNQKTNSSLTQAIIQEIDTLQ 94
RE +S++ +L+ K+ +++ Q + ++ L+
Sbjct: 322 DAAREATESVVARMLQHGPKSETAIAQQLAADMKALE 358
>gi|62317347|ref|YP_223200.1| peptidoglycan-binding protein [Brucella abortus bv. 1 str. 9-941]
gi|83269325|ref|YP_418616.1| Sel1-like repeat-containing protein [Brucella melitensis biovar
Abortus 2308]
gi|254698625|ref|ZP_05160453.1| Sel1-like repeat [Brucella abortus bv. 2 str. 86/8/59]
gi|254732072|ref|ZP_05190650.1| Sel1-like repeat [Brucella abortus bv. 4 str. 292]
gi|256256027|ref|ZP_05461563.1| Sel1-like repeat [Brucella abortus bv. 9 str. C68]
gi|62197540|gb|AAX75839.1| peptidoglycan-binding protein [Brucella abortus bv. 1 str. 9-941]
gi|82939599|emb|CAJ12579.1| Putative peptidoglycan binding domain 1:Sel1-like repeat [Brucella
melitensis biovar Abortus 2308]
Length = 913
Score = 40.1 bits (92), Expect = 0.11, Method: Composition-based stats.
Identities = 27/97 (27%), Positives = 50/97 (51%), Gaps = 7/97 (7%)
Query: 3 YDSREKEVFLESEVVHNIRLQIEEISAILSKKSRDTPNQEIRTKIYII-----TARIIAL 57
Y SR +SE +HN+ QI I+ L++ SR+ EIR ++ I + R I L
Sbjct: 264 YASRYGASSADSEAIHNLEQQIASIAQHLAQPSREL--AEIRPRLDSIERSLHSNREIVL 321
Query: 58 IVFREGEKSLIFDLLRTNQKTNSSLTQAIIQEIDTLQ 94
RE +S++ +L+ K+ +++ Q + ++ L+
Sbjct: 322 DAAREATESVVARMLQHGPKSETAIAQQLAADMKALE 358
>gi|148558507|ref|YP_001257764.1| putative peptidoglycan-binding protein [Brucella ovis ATCC 25840]
gi|148369792|gb|ABQ62664.1| putative peptidoglycan-binding protein [Brucella ovis ATCC 25840]
Length = 978
Score = 39.3 bits (90), Expect = 0.16, Method: Composition-based stats.
Identities = 27/97 (27%), Positives = 50/97 (51%), Gaps = 7/97 (7%)
Query: 3 YDSREKEVFLESEVVHNIRLQIEEISAILSKKSRDTPNQEIRTKIYII-----TARIIAL 57
Y SR +SE +HN+ QI I+ L++ SR+ EIR ++ I + R I L
Sbjct: 293 YASRYGASPADSEAIHNLEQQIASIAQHLAQPSREL--AEIRPRLDSIERSLHSNREIVL 350
Query: 58 IVFREGEKSLIFDLLRTNQKTNSSLTQAIIQEIDTLQ 94
RE +S++ +L+ K+ +++ Q + ++ L+
Sbjct: 351 DAAREATESVVARMLQHGPKSETAIAQQLAADMKALE 387
>gi|261313118|ref|ZP_05952315.1| peptidoglycan-binding protein [Brucella pinnipedialis M163/99/10]
gi|261302144|gb|EEY05641.1| peptidoglycan-binding protein [Brucella pinnipedialis M163/99/10]
Length = 580
Score = 39.3 bits (90), Expect = 0.19, Method: Composition-based stats.
Identities = 27/97 (27%), Positives = 50/97 (51%), Gaps = 7/97 (7%)
Query: 3 YDSREKEVFLESEVVHNIRLQIEEISAILSKKSRDTPNQEIRTKIYII-----TARIIAL 57
Y SR +SE +HN+ QI I+ L++ SR+ EIR ++ I + R I L
Sbjct: 125 YASRYGASSADSEAIHNLEQQIASIAQHLAQPSREL--AEIRPRLDSIERSLHSNREIVL 182
Query: 58 IVFREGEKSLIFDLLRTNQKTNSSLTQAIIQEIDTLQ 94
RE +S++ +L+ K+ +++ Q + ++ L+
Sbjct: 183 DAAREATESVVARMLQHGPKSETAIAQQLAADMKALE 219
>gi|306837317|ref|ZP_07470199.1| Peptidoglycan-binding domain 1 protein [Brucella sp. NF 2653]
gi|306407594|gb|EFM63791.1| Peptidoglycan-binding domain 1 protein [Brucella sp. NF 2653]
Length = 979
Score = 38.9 bits (89), Expect = 0.22, Method: Composition-based stats.
Identities = 27/97 (27%), Positives = 49/97 (50%), Gaps = 7/97 (7%)
Query: 3 YDSREKEVFLESEVVHNIRLQIEEISAILSKKSRDTPNQEIRTKIYII-----TARIIAL 57
Y SR +SE +HN+ QI I+ L++ SR+ EIR ++ I + R I L
Sbjct: 293 YASRYGASSADSEAIHNLEQQIASIAQHLAQPSREL--SEIRPRLDSIERSLHSNREIVL 350
Query: 58 IVFREGEKSLIFDLLRTNQKTNSSLTQAIIQEIDTLQ 94
RE +S++ +L+ K +++ Q + ++ L+
Sbjct: 351 DAAREATESVVARMLQHGPKGETAIAQQLAADMKALE 387
>gi|265985084|ref|ZP_06097819.1| peptidoglycan-binding domain 1 protein [Brucella sp. 83/13]
gi|264663676|gb|EEZ33937.1| peptidoglycan-binding domain 1 protein [Brucella sp. 83/13]
Length = 979
Score = 38.9 bits (89), Expect = 0.22, Method: Composition-based stats.
Identities = 27/97 (27%), Positives = 49/97 (50%), Gaps = 7/97 (7%)
Query: 3 YDSREKEVFLESEVVHNIRLQIEEISAILSKKSRDTPNQEIRTKIYII-----TARIIAL 57
Y SR +SE +HN+ QI I+ L++ SR+ EIR ++ I + R I L
Sbjct: 293 YASRYGASSADSEAIHNLEQQIASIAQHLAQPSREL--SEIRPRLDSIERSLHSNREIVL 350
Query: 58 IVFREGEKSLIFDLLRTNQKTNSSLTQAIIQEIDTLQ 94
RE +S++ +L+ K +++ Q + ++ L+
Sbjct: 351 DAAREATESVVARMLQHGPKGETAIAQQLAADMKALE 387
>gi|254720079|ref|ZP_05181890.1| putative peptidoglycan-binding protein [Brucella sp. 83/13]
Length = 950
Score = 38.9 bits (89), Expect = 0.22, Method: Composition-based stats.
Identities = 27/97 (27%), Positives = 49/97 (50%), Gaps = 7/97 (7%)
Query: 3 YDSREKEVFLESEVVHNIRLQIEEISAILSKKSRDTPNQEIRTKIYII-----TARIIAL 57
Y SR +SE +HN+ QI I+ L++ SR+ EIR ++ I + R I L
Sbjct: 264 YASRYGASSADSEAIHNLEQQIASIAQHLAQPSREL--SEIRPRLDSIERSLHSNREIVL 321
Query: 58 IVFREGEKSLIFDLLRTNQKTNSSLTQAIIQEIDTLQ 94
RE +S++ +L+ K +++ Q + ++ L+
Sbjct: 322 DAAREATESVVARMLQHGPKGETAIAQQLAADMKALE 358
>gi|222086837|ref|YP_002545371.1| hypothetical protein Arad_3509 [Agrobacterium radiobacter K84]
gi|221724285|gb|ACM27441.1| conserved hypothetical protein [Agrobacterium radiobacter K84]
Length = 388
Score = 37.7 bits (86), Expect = 0.50, Method: Composition-based stats.
Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 3/67 (4%)
Query: 9 EVFLESEVVH---NIRLQIEEISAILSKKSRDTPNQEIRTKIYIITARIIALIVFREGEK 65
E +E ++ H +R + +S LSK +Q +R +I +I A ++AL +EG++
Sbjct: 297 ERTVEDDIAHLTEEVRNRAAALSDRLSKSRSPAHDQAMREEIAVIGANMVALTARQEGDQ 356
Query: 66 SLIFDLL 72
S IFDLL
Sbjct: 357 SPIFDLL 363
>gi|294786774|ref|ZP_06752028.1| sensor histidine kinase [Parascardovia denticolens F0305]
gi|315226397|ref|ZP_07868185.1| sensor histidine kinase [Parascardovia denticolens DSM 10105]
gi|294485607|gb|EFG33241.1| sensor histidine kinase [Parascardovia denticolens F0305]
gi|315120529|gb|EFT83661.1| sensor histidine kinase [Parascardovia denticolens DSM 10105]
Length = 502
Score = 35.4 bits (80), Expect = 2.9, Method: Composition-based stats.
Identities = 15/50 (30%), Positives = 30/50 (60%)
Query: 14 SEVVHNIRLQIEEISAILSKKSRDTPNQEIRTKIYIITARIIALIVFREG 63
+E+ H ++ ++ +S++L ++R T NQE+R ++ RI + V EG
Sbjct: 298 AEIHHRVKNNLQAVSSLLRLQARRTSNQEVRKELQEAMRRIETIAVVHEG 347
>gi|50551433|ref|XP_503190.1| YALI0D23419p [Yarrowia lipolytica]
gi|49649058|emb|CAG81390.1| YALI0D23419p [Yarrowia lipolytica]
Length = 757
Score = 35.0 bits (79), Expect = 3.6, Method: Composition-based stats.
Identities = 24/77 (31%), Positives = 42/77 (54%), Gaps = 2/77 (2%)
Query: 17 VHNIRLQIEEISAILSKKSRDTPNQEIRTKIYIITARIIALIVFREGEKSLIFDLLRTNQ 76
V ++ L ++ I ++SK ++DTP E ++ I TA+ +V + S+ F T+
Sbjct: 84 VTSLALSVKAIEGLISKANQDTPKAEGWAELGINTAQQTVTLV--QLFTSISFHFTSTSI 141
Query: 77 KTNSSLTQAIIQEIDTL 93
T SS TQ +I ID++
Sbjct: 142 HTVSSSTQDVIHVIDSV 158
>gi|149185692|ref|ZP_01864008.1| putative signal transduction histidine kinase with GAF domain
[Erythrobacter sp. SD-21]
gi|148830912|gb|EDL49347.1| putative signal transduction histidine kinase with GAF domain
[Erythrobacter sp. SD-21]
Length = 362
Score = 34.7 bits (78), Expect = 4.3, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 30/51 (58%)
Query: 7 EKEVFLESEVVHNIRLQIEEISAILSKKSRDTPNQEIRTKIYIITARIIAL 57
++E L EV H ++ + I A+LS K+R T N+ +R ++ + RI +L
Sbjct: 164 QEERILRREVDHRVKNSLASIGALLSMKARKTSNEALRLELDDASTRIRSL 214
>gi|85373663|ref|YP_457725.1| signal transduction histidine kinase [Erythrobacter litoralis
HTCC2594]
gi|84786746|gb|ABC62928.1| putative signal transduction histidine kinase with GAF domain
[Erythrobacter litoralis HTCC2594]
Length = 365
Score = 34.7 bits (78), Expect = 4.3, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 31/53 (58%)
Query: 5 SREKEVFLESEVVHNIRLQIEEISAILSKKSRDTPNQEIRTKIYIITARIIAL 57
S E+E L EV H ++ + I A+LS K+R T N+ ++ ++ + RI +L
Sbjct: 162 SLEEERVLRREVDHRVKNSLASIGAMLSMKARRTSNETLKMELDDASTRIRSL 214
>gi|294790723|ref|ZP_06755881.1| sensor histidine kinase [Scardovia inopinata F0304]
gi|294458620|gb|EFG26973.1| sensor histidine kinase [Scardovia inopinata F0304]
Length = 500
Score = 34.3 bits (77), Expect = 5.9, Method: Composition-based stats.
Identities = 15/50 (30%), Positives = 30/50 (60%)
Query: 14 SEVVHNIRLQIEEISAILSKKSRDTPNQEIRTKIYIITARIIALIVFREG 63
+EV H I+ ++ +S++L ++R T N+E+R ++ R+ + V EG
Sbjct: 295 AEVHHRIKNNLQAVSSLLRLQARRTKNEEVRKELQEAQRRVETIAVVHEG 344
>gi|309801261|ref|ZP_07695390.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
[Bifidobacterium dentium JCVIHMP022]
gi|308222150|gb|EFO78433.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
[Bifidobacterium dentium JCVIHMP022]
Length = 494
Score = 33.9 bits (76), Expect = 7.2, Method: Composition-based stats.
Identities = 22/100 (22%), Positives = 55/100 (55%), Gaps = 6/100 (6%)
Query: 6 REKEVFLE----SEVVHNIRLQIEEISAILSKKSRDTPNQEIRTKIYIITARIIALIVFR 61
REKE+ + SE+ H ++ ++ +SA+L ++R T ++E++ ++ R+ + +
Sbjct: 279 REKELQTKDATISEIHHRVKNNLQAVSALLRLQARKTKSEEVKKELKEAQRRVQTIAMVH 338
Query: 62 EGEKSLIFDLLRTNQKTNSSLTQAIIQEIDTLQHQCKSIE 101
EG +++ ++ +S L A+ ++ T++ Q +I+
Sbjct: 339 EGLSQTADEIVDYDKVISSLLKMAV--DLATMRDQHINID 376
>gi|283455794|ref|YP_003360358.1| histidine kinase-like protein [Bifidobacterium dentium Bd1]
gi|283102428|gb|ADB09534.1| Histidine kinase-like protein [Bifidobacterium dentium Bd1]
Length = 508
Score = 33.9 bits (76), Expect = 7.2, Method: Composition-based stats.
Identities = 22/100 (22%), Positives = 55/100 (55%), Gaps = 6/100 (6%)
Query: 6 REKEVFLE----SEVVHNIRLQIEEISAILSKKSRDTPNQEIRTKIYIITARIIALIVFR 61
REKE+ + SE+ H ++ ++ +SA+L ++R T ++E++ ++ R+ + +
Sbjct: 293 REKELQTKDATISEIHHRVKNNLQAVSALLRLQARKTKSEEVKKELKEAQRRVQTIAMVH 352
Query: 62 EGEKSLIFDLLRTNQKTNSSLTQAIIQEIDTLQHQCKSIE 101
EG +++ ++ +S L A+ ++ T++ Q +I+
Sbjct: 353 EGLSQTADEIVDYDKVISSLLKMAV--DLATMRDQHINID 390
>gi|171743228|ref|ZP_02919035.1| hypothetical protein BIFDEN_02356 [Bifidobacterium dentium ATCC
27678]
gi|306823071|ref|ZP_07456447.1| histidine kinase family protein [Bifidobacterium dentium ATCC
27679]
gi|171278842|gb|EDT46503.1| hypothetical protein BIFDEN_02356 [Bifidobacterium dentium ATCC
27678]
gi|304553703|gb|EFM41614.1| histidine kinase family protein [Bifidobacterium dentium ATCC
27679]
Length = 498
Score = 33.9 bits (76), Expect = 7.2, Method: Composition-based stats.
Identities = 22/100 (22%), Positives = 55/100 (55%), Gaps = 6/100 (6%)
Query: 6 REKEVFLE----SEVVHNIRLQIEEISAILSKKSRDTPNQEIRTKIYIITARIIALIVFR 61
REKE+ + SE+ H ++ ++ +SA+L ++R T ++E++ ++ R+ + +
Sbjct: 283 REKELQTKDATISEIHHRVKNNLQAVSALLRLQARKTKSEEVKKELKEAQRRVQTIAMVH 342
Query: 62 EGEKSLIFDLLRTNQKTNSSLTQAIIQEIDTLQHQCKSIE 101
EG +++ ++ +S L A+ ++ T++ Q +I+
Sbjct: 343 EGLSQTADEIVDYDKVISSLLKMAV--DLATMRDQHINID 380
>gi|289178777|gb|ADC86023.1| Sensory Transduction Protein Kinase [Bifidobacterium animalis
subsp. lactis BB-12]
Length = 501
Score = 33.9 bits (76), Expect = 7.3, Method: Composition-based stats.
Identities = 20/81 (24%), Positives = 45/81 (55%), Gaps = 11/81 (13%)
Query: 6 REKEVFLE------SEVVHNIRLQIEEISAILSKKSRDTPNQEIRTKIYIITARIIALIV 59
R +EV L+ SE+ H ++ ++ +SA+L ++R T +QE++ ++ R+ + +
Sbjct: 286 RRREVELQTKDATISEIHHRVKNNLQAVSALLRLQARKTKSQEVKKELQEAMRRVQTIAM 345
Query: 60 FREG-----EKSLIFDLLRTN 75
EG ++++ FD + +N
Sbjct: 346 VHEGLSQTADENVDFDKVISN 366
>gi|219683520|ref|YP_002469903.1| histidine kinase-like protein [Bifidobacterium animalis subsp.
lactis AD011]
gi|219621170|gb|ACL29327.1| histidine kinase-like protein [Bifidobacterium animalis subsp.
lactis AD011]
Length = 509
Score = 33.9 bits (76), Expect = 7.3, Method: Composition-based stats.
Identities = 20/81 (24%), Positives = 45/81 (55%), Gaps = 11/81 (13%)
Query: 6 REKEVFLE------SEVVHNIRLQIEEISAILSKKSRDTPNQEIRTKIYIITARIIALIV 59
R +EV L+ SE+ H ++ ++ +SA+L ++R T +QE++ ++ R+ + +
Sbjct: 294 RRREVELQTKDATISEIHHRVKNNLQAVSALLRLQARKTKSQEVKKELQEAMRRVQTIAM 353
Query: 60 FREG-----EKSLIFDLLRTN 75
EG ++++ FD + +N
Sbjct: 354 VHEGLSQTADENVDFDKVISN 374
>gi|183601466|ref|ZP_02962836.1| histidine kinase-like protein [Bifidobacterium animalis subsp.
lactis HN019]
gi|241191034|ref|YP_002968428.1| histidine kinase-like protein [Bifidobacterium animalis subsp.
lactis Bl-04]
gi|241196440|ref|YP_002969995.1| histidine kinase-like protein [Bifidobacterium animalis subsp.
lactis DSM 10140]
gi|183219072|gb|EDT89713.1| histidine kinase-like protein [Bifidobacterium animalis subsp.
lactis HN019]
gi|240249426|gb|ACS46366.1| histidine kinase-like protein [Bifidobacterium animalis subsp.
lactis Bl-04]
gi|240250994|gb|ACS47933.1| histidine kinase-like protein [Bifidobacterium animalis subsp.
lactis DSM 10140]
gi|295794023|gb|ADG33558.1| histidine kinase-like protein [Bifidobacterium animalis subsp.
lactis V9]
Length = 492
Score = 33.9 bits (76), Expect = 7.3, Method: Composition-based stats.
Identities = 20/81 (24%), Positives = 45/81 (55%), Gaps = 11/81 (13%)
Query: 6 REKEVFLE------SEVVHNIRLQIEEISAILSKKSRDTPNQEIRTKIYIITARIIALIV 59
R +EV L+ SE+ H ++ ++ +SA+L ++R T +QE++ ++ R+ + +
Sbjct: 277 RRREVELQTKDATISEIHHRVKNNLQAVSALLRLQARKTKSQEVKKELQEAMRRVQTIAM 336
Query: 60 FREG-----EKSLIFDLLRTN 75
EG ++++ FD + +N
Sbjct: 337 VHEGLSQTADENVDFDKVISN 357
>gi|225351853|ref|ZP_03742876.1| hypothetical protein BIFPSEUDO_03455 [Bifidobacterium
pseudocatenulatum DSM 20438]
gi|225157100|gb|EEG70439.1| hypothetical protein BIFPSEUDO_03455 [Bifidobacterium
pseudocatenulatum DSM 20438]
Length = 501
Score = 33.9 bits (76), Expect = 8.2, Method: Composition-based stats.
Identities = 21/95 (22%), Positives = 52/95 (54%), Gaps = 6/95 (6%)
Query: 6 REKEVFLE----SEVVHNIRLQIEEISAILSKKSRDTPNQEIRTKIYIITARIIALIVFR 61
REKE+ + SE+ H ++ ++ +SA+L ++R T ++E++ ++ R+ + +
Sbjct: 285 REKELQTKDATISEIHHRVKNNLQAVSALLRLQARKTKSEEVKKELKEAQRRVQTIAMVH 344
Query: 62 EGEKSLIFDLLRTNQKTNSSLTQAIIQEIDTLQHQ 96
EG +++ ++ +S L A+ ++ T++ Q
Sbjct: 345 EGLSQTADEIVDYDKVISSLLKMAV--DLATMRDQ 377
>gi|212716146|ref|ZP_03324274.1| hypothetical protein BIFCAT_01061 [Bifidobacterium catenulatum DSM
16992]
gi|212661513|gb|EEB22088.1| hypothetical protein BIFCAT_01061 [Bifidobacterium catenulatum DSM
16992]
Length = 498
Score = 33.9 bits (76), Expect = 8.2, Method: Composition-based stats.
Identities = 21/95 (22%), Positives = 52/95 (54%), Gaps = 6/95 (6%)
Query: 6 REKEVFLE----SEVVHNIRLQIEEISAILSKKSRDTPNQEIRTKIYIITARIIALIVFR 61
REKE+ + SE+ H ++ ++ +SA+L ++R T ++E++ ++ R+ + +
Sbjct: 285 REKELQTKDATISEIHHRVKNNLQAVSALLRLQARKTKSEEVKKELKEAQRRVQTIAMVH 344
Query: 62 EGEKSLIFDLLRTNQKTNSSLTQAIIQEIDTLQHQ 96
EG +++ ++ +S L A+ ++ T++ Q
Sbjct: 345 EGLSQTADEIVDYDKVISSLLKMAV--DLATMRDQ 377
Database: nr
Posted date: May 22, 2011 12:22 AM
Number of letters in database: 999,999,966
Number of sequences in database: 2,987,313
Database: /data/usr2/db/fasta/nr.01
Posted date: May 22, 2011 12:30 AM
Number of letters in database: 999,999,796
Number of sequences in database: 2,903,041
Database: /data/usr2/db/fasta/nr.02
Posted date: May 22, 2011 12:36 AM
Number of letters in database: 999,999,281
Number of sequences in database: 2,904,016
Database: /data/usr2/db/fasta/nr.03
Posted date: May 22, 2011 12:41 AM
Number of letters in database: 999,999,960
Number of sequences in database: 2,935,328
Database: /data/usr2/db/fasta/nr.04
Posted date: May 22, 2011 12:46 AM
Number of letters in database: 842,794,627
Number of sequences in database: 2,394,679
Lambda K H
0.319 0.133 0.345
Lambda K H
0.267 0.0423 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 843,103,538
Number of Sequences: 14124377
Number of extensions: 28077125
Number of successful extensions: 77518
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 43
Number of HSP's that attempted gapping in prelim test: 77510
Number of HSP's gapped (non-prelim): 51
length of query: 104
length of database: 4,842,793,630
effective HSP length: 73
effective length of query: 31
effective length of database: 3,811,714,109
effective search space: 118163137379
effective search space used: 118163137379
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 76 (33.8 bits)