BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= gi|254780890|ref|YP_003065303.1| hypothetical protein
CLIBASIA_03935 [Candidatus Liberibacter asiaticus str. psy62]
(104 letters)
Database: nr
14,124,377 sequences; 4,842,793,630 total letters
Searching..................................................done
>gi|254780890|ref|YP_003065303.1| hypothetical protein CLIBASIA_03935 [Candidatus Liberibacter
asiaticus str. psy62]
gi|254040567|gb|ACT57363.1| hypothetical protein CLIBASIA_03935 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 104
Score = 172 bits (437), Expect = 1e-41, Method: Composition-based stats.
Identities = 104/104 (100%), Positives = 104/104 (100%)
Query: 1 MFYDSREKEVFLESEVVHNIRLQIEEISAILSKKSRDTPNQEIRTKIYIITARIIALIVF 60
MFYDSREKEVFLESEVVHNIRLQIEEISAILSKKSRDTPNQEIRTKIYIITARIIALIVF
Sbjct: 1 MFYDSREKEVFLESEVVHNIRLQIEEISAILSKKSRDTPNQEIRTKIYIITARIIALIVF 60
Query: 61 REGEKSLIFDLLRTNQKTNSSLTQAIIQEIDTLQHQCKSIERDS 104
REGEKSLIFDLLRTNQKTNSSLTQAIIQEIDTLQHQCKSIERDS
Sbjct: 61 REGEKSLIFDLLRTNQKTNSSLTQAIIQEIDTLQHQCKSIERDS 104
>gi|315122693|ref|YP_004063182.1| hypothetical protein CKC_04725 [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313496095|gb|ADR52694.1| hypothetical protein CKC_04725 [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 100
Score = 87.4 bits (215), Expect = 5e-16, Method: Composition-based stats.
Identities = 49/98 (50%), Positives = 73/98 (74%)
Query: 5 SREKEVFLESEVVHNIRLQIEEISAILSKKSRDTPNQEIRTKIYIITARIIALIVFREGE 64
S K LES+V+++IRLQIEEI IL+++ ++ ++E+ TK+Y++TARIIAL REG+
Sbjct: 3 STRKNDCLESKVIYSIRLQIEEIFKILTQEKKEISDKELYTKMYLVTARIIALTALREGK 62
Query: 65 KSLIFDLLRTNQKTNSSLTQAIIQEIDTLQHQCKSIER 102
KS IF L+ N+K +S LTQ +QEIDTL++Q I++
Sbjct: 63 KSPIFHYLKKNKKYDSLLTQTTMQEIDTLKYQLTPIKK 100
>gi|332667493|ref|YP_004450281.1| signal transduction histidine kinase [Haliscomenobacter hydrossis
DSM 1100]
gi|332336307|gb|AEE53408.1| signal transduction histidine kinase [Haliscomenobacter hydrossis
DSM 1100]
Length = 609
Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 24/94 (25%), Positives = 50/94 (53%), Gaps = 4/94 (4%)
Query: 5 SREKEVFLESEVVHNIRLQIEEISAILSKKSRDTPNQEIRTKIYIITARIIALI----VF 60
S E+++ L+ E+ H ++ ++ I ++L + D ++ R + +++RI A+ V
Sbjct: 401 SLEQQIMLQGEIHHRVKNNLQVIISLLELQKEDIKDENTRNGLEAMSSRIYAIAAVHDVL 460
Query: 61 REGEKSLIFDLLRTNQKTNSSLTQAIIQEIDTLQ 94
+G++ + D L +K S L QA+ +E T Q
Sbjct: 461 YQGQEGQLVDFLNYTKKLCSHLQQAMAREDSTFQ 494
>gi|149186824|ref|ZP_01865134.1| putative signal transduction histidine kinase with GAF domain
[Erythrobacter sp. SD-21]
gi|148829491|gb|EDL47932.1| putative signal transduction histidine kinase with GAF domain
[Erythrobacter sp. SD-21]
Length = 208
Score = 40.1 bits (92), Expect = 0.092, Method: Composition-based stats.
Identities = 25/89 (28%), Positives = 46/89 (51%), Gaps = 4/89 (4%)
Query: 7 EKEVFLESEVVHNIRLQIEEISAILSKKSRDTPNQEIRTKIYIITARIIALIVFREGEKS 66
E+E L EV H ++ + IS+I++ K+R +P++ RT + I RI +L E +
Sbjct: 11 EREQTLRREVDHRVKNSLASISSIITMKARRSPDEGTRTALEDIGLRIRSLASLHEQLQD 70
Query: 67 L----IFDLLRTNQKTNSSLTQAIIQEID 91
+ DL+ ++ + L Q + Q +D
Sbjct: 71 VGAHQTVDLVVLFERVGTDLRQLLPQGVD 99
>gi|306841654|ref|ZP_07474343.1| Peptidoglycan-binding domain 1 protein [Brucella sp. BO2]
gi|306288267|gb|EFM59647.1| Peptidoglycan-binding domain 1 protein [Brucella sp. BO2]
Length = 946
Score = 40.1 bits (92), Expect = 0.10, Method: Composition-based stats.
Identities = 27/97 (27%), Positives = 50/97 (51%), Gaps = 7/97 (7%)
Query: 3 YDSREKEVFLESEVVHNIRLQIEEISAILSKKSRDTPNQEIRTKIYII-----TARIIAL 57
Y SR +SE +HN+ QI I+ L++ SR+ EIR ++ I + R I L
Sbjct: 261 YASRYGPSSADSEAIHNLEQQIASIAQHLAQPSREL--SEIRPRLDSIERSLHSNREIVL 318
Query: 58 IVFREGEKSLIFDLLRTNQKTNSSLTQAIIQEIDTLQ 94
RE +S++ +L+ K+ +++ Q + ++ L+
Sbjct: 319 DAAREATESVVARMLQHGPKSETAIAQQLAADMKALE 355
>gi|294853408|ref|ZP_06794080.1| peptidoglycan-binding protein [Brucella sp. NVSL 07-0026]
gi|294819063|gb|EFG36063.1| peptidoglycan-binding protein [Brucella sp. NVSL 07-0026]
Length = 978
Score = 40.1 bits (92), Expect = 0.11, Method: Composition-based stats.
Identities = 27/97 (27%), Positives = 50/97 (51%), Gaps = 7/97 (7%)
Query: 3 YDSREKEVFLESEVVHNIRLQIEEISAILSKKSRDTPNQEIRTKIYII-----TARIIAL 57
Y SR +SE +HN+ QI I+ L++ SR+ EIR ++ I + R I L
Sbjct: 293 YASRYGASSADSEAIHNLEQQIASIAQHLAQPSREL--AEIRPRLDSIERSLHSNREIVL 350
Query: 58 IVFREGEKSLIFDLLRTNQKTNSSLTQAIIQEIDTLQ 94
RE +S++ +L+ K+ +++ Q + ++ L+
Sbjct: 351 DAAREATESVVARMLQHGPKSETAIAQQLAADMKALE 387
>gi|265999048|ref|ZP_06111541.1| peptidoglycan binding domain-containing protein [Brucella
melitensis bv. 2 str. 63/9]
gi|263092001|gb|EEZ16298.1| peptidoglycan binding domain-containing protein [Brucella
melitensis bv. 2 str. 63/9]
gi|326410976|gb|ADZ68040.1| peptidoglycan-binding domain 1 protein [Brucella melitensis M28]
gi|326554267|gb|ADZ88906.1| peptidoglycan-binding domain 1 protein [Brucella melitensis M5-90]
Length = 978
Score = 40.1 bits (92), Expect = 0.11, Method: Composition-based stats.
Identities = 27/97 (27%), Positives = 50/97 (51%), Gaps = 7/97 (7%)
Query: 3 YDSREKEVFLESEVVHNIRLQIEEISAILSKKSRDTPNQEIRTKIYII-----TARIIAL 57
Y SR +SE +HN+ QI I+ L++ SR+ EIR ++ I + R I L
Sbjct: 293 YASRYGASSADSEAIHNLEQQIASIAQHLAQPSREL--AEIRPRLDSIERSLHSNREIVL 350
Query: 58 IVFREGEKSLIFDLLRTNQKTNSSLTQAIIQEIDTLQ 94
RE +S++ +L+ K+ +++ Q + ++ L+
Sbjct: 351 DAAREATESVVARMLQHGPKSETAIAQQLAADMKALE 387
>gi|265992772|ref|ZP_06105329.1| peptidoglycan binding domain-containing protein [Brucella
melitensis bv. 3 str. Ether]
gi|262763642|gb|EEZ09674.1| peptidoglycan binding domain-containing protein [Brucella
melitensis bv. 3 str. Ether]
Length = 978
Score = 40.1 bits (92), Expect = 0.11, Method: Composition-based stats.
Identities = 27/97 (27%), Positives = 50/97 (51%), Gaps = 7/97 (7%)
Query: 3 YDSREKEVFLESEVVHNIRLQIEEISAILSKKSRDTPNQEIRTKIYII-----TARIIAL 57
Y SR +SE +HN+ QI I+ L++ SR+ EIR ++ I + R I L
Sbjct: 293 YASRYGASSADSEAIHNLEQQIASIAQHLAQPSREL--AEIRPRLDSIERSLHSNREIVL 350
Query: 58 IVFREGEKSLIFDLLRTNQKTNSSLTQAIIQEIDTLQ 94
RE +S++ +L+ K+ +++ Q + ++ L+
Sbjct: 351 DAAREATESVVARMLQHGPKSETAIAQQLAADMKALE 387
>gi|261750518|ref|ZP_05994227.1| peptidoglycan-binding domain 1 protein [Brucella suis bv. 5 str.
513]
gi|261740271|gb|EEY28197.1| peptidoglycan-binding domain 1 protein [Brucella suis bv. 5 str.
513]
Length = 942
Score = 40.1 bits (92), Expect = 0.11, Method: Composition-based stats.
Identities = 27/97 (27%), Positives = 50/97 (51%), Gaps = 7/97 (7%)
Query: 3 YDSREKEVFLESEVVHNIRLQIEEISAILSKKSRDTPNQEIRTKIYII-----TARIIAL 57
Y SR +SE +HN+ QI I+ L++ SR+ EIR ++ I + R I L
Sbjct: 293 YASRYGASSADSEAIHNLEQQIASIAQHLAQPSREL--AEIRPRLDSIERSLHSNREIVL 350
Query: 58 IVFREGEKSLIFDLLRTNQKTNSSLTQAIIQEIDTLQ 94
RE +S++ +L+ K+ +++ Q + ++ L+
Sbjct: 351 DAAREATESVVARMLQHGPKSETAIAQQLAADMKALE 387
>gi|261322945|ref|ZP_05962142.1| peptidoglycan binding domain-containing protein [Brucella neotomae
5K33]
gi|261298925|gb|EEY02422.1| peptidoglycan binding domain-containing protein [Brucella neotomae
5K33]
Length = 959
Score = 40.1 bits (92), Expect = 0.11, Method: Composition-based stats.
Identities = 27/97 (27%), Positives = 50/97 (51%), Gaps = 7/97 (7%)
Query: 3 YDSREKEVFLESEVVHNIRLQIEEISAILSKKSRDTPNQEIRTKIYII-----TARIIAL 57
Y SR +SE +HN+ QI I+ L++ SR+ EIR ++ I + R I L
Sbjct: 293 YASRYGASSADSEAIHNLEQQIASIAQHLAQPSREL--AEIRPRLDSIERSLHSNREIVL 350
Query: 58 IVFREGEKSLIFDLLRTNQKTNSSLTQAIIQEIDTLQ 94
RE +S++ +L+ K+ +++ Q + ++ L+
Sbjct: 351 DAAREATESVVARMLQHGPKSETAIAQQLAADMKALE 387
>gi|261217417|ref|ZP_05931698.1| peptidoglycan-binding domain 1 protein [Brucella ceti M13/05/1]
gi|261320291|ref|ZP_05959488.1| peptidoglycan-binding domain 1 protein [Brucella ceti M644/93/1]
gi|260922506|gb|EEX89074.1| peptidoglycan-binding domain 1 protein [Brucella ceti M13/05/1]
gi|261292981|gb|EEX96477.1| peptidoglycan-binding domain 1 protein [Brucella ceti M644/93/1]
Length = 978
Score = 40.1 bits (92), Expect = 0.11, Method: Composition-based stats.
Identities = 27/97 (27%), Positives = 50/97 (51%), Gaps = 7/97 (7%)
Query: 3 YDSREKEVFLESEVVHNIRLQIEEISAILSKKSRDTPNQEIRTKIYII-----TARIIAL 57
Y SR +SE +HN+ QI I+ L++ SR+ EIR ++ I + R I L
Sbjct: 293 YASRYGASSADSEAIHNLEQQIASIAQHLAQPSREL--AEIRPRLDSIERSLHSNREIVL 350
Query: 58 IVFREGEKSLIFDLLRTNQKTNSSLTQAIIQEIDTLQ 94
RE +S++ +L+ K+ +++ Q + ++ L+
Sbjct: 351 DAAREATESVVARMLQHGPKSETAIAQQLAADMKALE 387
>gi|261216267|ref|ZP_05930548.1| peptidoglycan-binding domain 1 protein [Brucella abortus bv. 3 str.
Tulya]
gi|260917874|gb|EEX84735.1| peptidoglycan-binding domain 1 protein [Brucella abortus bv. 3 str.
Tulya]
Length = 942
Score = 40.1 bits (92), Expect = 0.11, Method: Composition-based stats.
Identities = 27/97 (27%), Positives = 50/97 (51%), Gaps = 7/97 (7%)
Query: 3 YDSREKEVFLESEVVHNIRLQIEEISAILSKKSRDTPNQEIRTKIYII-----TARIIAL 57
Y SR +SE +HN+ QI I+ L++ SR+ EIR ++ I + R I L
Sbjct: 293 YASRYGASSADSEAIHNLEQQIASIAQHLAQPSREL--AEIRPRLDSIERSLHSNREIVL 350
Query: 58 IVFREGEKSLIFDLLRTNQKTNSSLTQAIIQEIDTLQ 94
RE +S++ +L+ K+ +++ Q + ++ L+
Sbjct: 351 DAAREATESVVARMLQHGPKSETAIAQQLAADMKALE 387
>gi|260756423|ref|ZP_05868771.1| peptidoglycan-binding domain 1 protein [Brucella abortus bv. 6 str.
870]
gi|260676531|gb|EEX63352.1| peptidoglycan-binding domain 1 protein [Brucella abortus bv. 6 str.
870]
Length = 893
Score = 40.1 bits (92), Expect = 0.11, Method: Composition-based stats.
Identities = 27/97 (27%), Positives = 50/97 (51%), Gaps = 7/97 (7%)
Query: 3 YDSREKEVFLESEVVHNIRLQIEEISAILSKKSRDTPNQEIRTKIYII-----TARIIAL 57
Y SR +SE +HN+ QI I+ L++ SR+ EIR ++ I + R I L
Sbjct: 293 YASRYGASSADSEAIHNLEQQIASIAQHLAQPSREL--AEIRPRLDSIERSLHSNREIVL 350
Query: 58 IVFREGEKSLIFDLLRTNQKTNSSLTQAIIQEIDTLQ 94
RE +S++ +L+ K+ +++ Q + ++