BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254780890|ref|YP_003065303.1| hypothetical protein CLIBASIA_03935 [Candidatus Liberibacter asiaticus str. psy62] (104 letters) Database: nr 14,124,377 sequences; 4,842,793,630 total letters Searching..................................................done >gi|254780890|ref|YP_003065303.1| hypothetical protein CLIBASIA_03935 [Candidatus Liberibacter asiaticus str. psy62] gi|254040567|gb|ACT57363.1| hypothetical protein CLIBASIA_03935 [Candidatus Liberibacter asiaticus str. psy62] Length = 104 Score = 172 bits (437), Expect = 1e-41, Method: Composition-based stats. Identities = 104/104 (100%), Positives = 104/104 (100%) Query: 1 MFYDSREKEVFLESEVVHNIRLQIEEISAILSKKSRDTPNQEIRTKIYIITARIIALIVF 60 MFYDSREKEVFLESEVVHNIRLQIEEISAILSKKSRDTPNQEIRTKIYIITARIIALIVF Sbjct: 1 MFYDSREKEVFLESEVVHNIRLQIEEISAILSKKSRDTPNQEIRTKIYIITARIIALIVF 60 Query: 61 REGEKSLIFDLLRTNQKTNSSLTQAIIQEIDTLQHQCKSIERDS 104 REGEKSLIFDLLRTNQKTNSSLTQAIIQEIDTLQHQCKSIERDS Sbjct: 61 REGEKSLIFDLLRTNQKTNSSLTQAIIQEIDTLQHQCKSIERDS 104 >gi|315122693|ref|YP_004063182.1| hypothetical protein CKC_04725 [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313496095|gb|ADR52694.1| hypothetical protein CKC_04725 [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 100 Score = 87.4 bits (215), Expect = 5e-16, Method: Composition-based stats. Identities = 49/98 (50%), Positives = 73/98 (74%) Query: 5 SREKEVFLESEVVHNIRLQIEEISAILSKKSRDTPNQEIRTKIYIITARIIALIVFREGE 64 S K LES+V+++IRLQIEEI IL+++ ++ ++E+ TK+Y++TARIIAL REG+ Sbjct: 3 STRKNDCLESKVIYSIRLQIEEIFKILTQEKKEISDKELYTKMYLVTARIIALTALREGK 62 Query: 65 KSLIFDLLRTNQKTNSSLTQAIIQEIDTLQHQCKSIER 102 KS IF L+ N+K +S LTQ +QEIDTL++Q I++ Sbjct: 63 KSPIFHYLKKNKKYDSLLTQTTMQEIDTLKYQLTPIKK 100 >gi|332667493|ref|YP_004450281.1| signal transduction histidine kinase [Haliscomenobacter hydrossis DSM 1100] gi|332336307|gb|AEE53408.1| signal transduction histidine kinase [Haliscomenobacter hydrossis DSM 1100] Length = 609 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 24/94 (25%), Positives = 50/94 (53%), Gaps = 4/94 (4%) Query: 5 SREKEVFLESEVVHNIRLQIEEISAILSKKSRDTPNQEIRTKIYIITARIIALI----VF 60 S E+++ L+ E+ H ++ ++ I ++L + D ++ R + +++RI A+ V Sbjct: 401 SLEQQIMLQGEIHHRVKNNLQVIISLLELQKEDIKDENTRNGLEAMSSRIYAIAAVHDVL 460 Query: 61 REGEKSLIFDLLRTNQKTNSSLTQAIIQEIDTLQ 94 +G++ + D L +K S L QA+ +E T Q Sbjct: 461 YQGQEGQLVDFLNYTKKLCSHLQQAMAREDSTFQ 494 >gi|149186824|ref|ZP_01865134.1| putative signal transduction histidine kinase with GAF domain [Erythrobacter sp. SD-21] gi|148829491|gb|EDL47932.1| putative signal transduction histidine kinase with GAF domain [Erythrobacter sp. SD-21] Length = 208 Score = 40.1 bits (92), Expect = 0.092, Method: Composition-based stats. Identities = 25/89 (28%), Positives = 46/89 (51%), Gaps = 4/89 (4%) Query: 7 EKEVFLESEVVHNIRLQIEEISAILSKKSRDTPNQEIRTKIYIITARIIALIVFREGEKS 66 E+E L EV H ++ + IS+I++ K+R +P++ RT + I RI +L E + Sbjct: 11 EREQTLRREVDHRVKNSLASISSIITMKARRSPDEGTRTALEDIGLRIRSLASLHEQLQD 70 Query: 67 L----IFDLLRTNQKTNSSLTQAIIQEID 91 + DL+ ++ + L Q + Q +D Sbjct: 71 VGAHQTVDLVVLFERVGTDLRQLLPQGVD 99 >gi|306841654|ref|ZP_07474343.1| Peptidoglycan-binding domain 1 protein [Brucella sp. BO2] gi|306288267|gb|EFM59647.1| Peptidoglycan-binding domain 1 protein [Brucella sp. BO2] Length = 946 Score = 40.1 bits (92), Expect = 0.10, Method: Composition-based stats. Identities = 27/97 (27%), Positives = 50/97 (51%), Gaps = 7/97 (7%) Query: 3 YDSREKEVFLESEVVHNIRLQIEEISAILSKKSRDTPNQEIRTKIYII-----TARIIAL 57 Y SR +SE +HN+ QI I+ L++ SR+ EIR ++ I + R I L Sbjct: 261 YASRYGPSSADSEAIHNLEQQIASIAQHLAQPSREL--SEIRPRLDSIERSLHSNREIVL 318 Query: 58 IVFREGEKSLIFDLLRTNQKTNSSLTQAIIQEIDTLQ 94 RE +S++ +L+ K+ +++ Q + ++ L+ Sbjct: 319 DAAREATESVVARMLQHGPKSETAIAQQLAADMKALE 355 >gi|294853408|ref|ZP_06794080.1| peptidoglycan-binding protein [Brucella sp. NVSL 07-0026] gi|294819063|gb|EFG36063.1| peptidoglycan-binding protein [Brucella sp. NVSL 07-0026] Length = 978 Score = 40.1 bits (92), Expect = 0.11, Method: Composition-based stats. Identities = 27/97 (27%), Positives = 50/97 (51%), Gaps = 7/97 (7%) Query: 3 YDSREKEVFLESEVVHNIRLQIEEISAILSKKSRDTPNQEIRTKIYII-----TARIIAL 57 Y SR +SE +HN+ QI I+ L++ SR+ EIR ++ I + R I L Sbjct: 293 YASRYGASSADSEAIHNLEQQIASIAQHLAQPSREL--AEIRPRLDSIERSLHSNREIVL 350 Query: 58 IVFREGEKSLIFDLLRTNQKTNSSLTQAIIQEIDTLQ 94 RE +S++ +L+ K+ +++ Q + ++ L+ Sbjct: 351 DAAREATESVVARMLQHGPKSETAIAQQLAADMKALE 387 >gi|265999048|ref|ZP_06111541.1| peptidoglycan binding domain-containing protein [Brucella melitensis bv. 2 str. 63/9] gi|263092001|gb|EEZ16298.1| peptidoglycan binding domain-containing protein [Brucella melitensis bv. 2 str. 63/9] gi|326410976|gb|ADZ68040.1| peptidoglycan-binding domain 1 protein [Brucella melitensis M28] gi|326554267|gb|ADZ88906.1| peptidoglycan-binding domain 1 protein [Brucella melitensis M5-90] Length = 978 Score = 40.1 bits (92), Expect = 0.11, Method: Composition-based stats. Identities = 27/97 (27%), Positives = 50/97 (51%), Gaps = 7/97 (7%) Query: 3 YDSREKEVFLESEVVHNIRLQIEEISAILSKKSRDTPNQEIRTKIYII-----TARIIAL 57 Y SR +SE +HN+ QI I+ L++ SR+ EIR ++ I + R I L Sbjct: 293 YASRYGASSADSEAIHNLEQQIASIAQHLAQPSREL--AEIRPRLDSIERSLHSNREIVL 350 Query: 58 IVFREGEKSLIFDLLRTNQKTNSSLTQAIIQEIDTLQ 94 RE +S++ +L+ K+ +++ Q + ++ L+ Sbjct: 351 DAAREATESVVARMLQHGPKSETAIAQQLAADMKALE 387 >gi|265992772|ref|ZP_06105329.1| peptidoglycan binding domain-containing protein [Brucella melitensis bv. 3 str. Ether] gi|262763642|gb|EEZ09674.1| peptidoglycan binding domain-containing protein [Brucella melitensis bv. 3 str. Ether] Length = 978 Score = 40.1 bits (92), Expect = 0.11, Method: Composition-based stats. Identities = 27/97 (27%), Positives = 50/97 (51%), Gaps = 7/97 (7%) Query: 3 YDSREKEVFLESEVVHNIRLQIEEISAILSKKSRDTPNQEIRTKIYII-----TARIIAL 57 Y SR +SE +HN+ QI I+ L++ SR+ EIR ++ I + R I L Sbjct: 293 YASRYGASSADSEAIHNLEQQIASIAQHLAQPSREL--AEIRPRLDSIERSLHSNREIVL 350 Query: 58 IVFREGEKSLIFDLLRTNQKTNSSLTQAIIQEIDTLQ 94 RE +S++ +L+ K+ +++ Q + ++ L+ Sbjct: 351 DAAREATESVVARMLQHGPKSETAIAQQLAADMKALE 387 >gi|261750518|ref|ZP_05994227.1| peptidoglycan-binding domain 1 protein [Brucella suis bv. 5 str. 513] gi|261740271|gb|EEY28197.1| peptidoglycan-binding domain 1 protein [Brucella suis bv. 5 str. 513] Length = 942 Score = 40.1 bits (92), Expect = 0.11, Method: Composition-based stats. Identities = 27/97 (27%), Positives = 50/97 (51%), Gaps = 7/97 (7%) Query: 3 YDSREKEVFLESEVVHNIRLQIEEISAILSKKSRDTPNQEIRTKIYII-----TARIIAL 57 Y SR +SE +HN+ QI I+ L++ SR+ EIR ++ I + R I L Sbjct: 293 YASRYGASSADSEAIHNLEQQIASIAQHLAQPSREL--AEIRPRLDSIERSLHSNREIVL 350 Query: 58 IVFREGEKSLIFDLLRTNQKTNSSLTQAIIQEIDTLQ 94 RE +S++ +L+ K+ +++ Q + ++ L+ Sbjct: 351 DAAREATESVVARMLQHGPKSETAIAQQLAADMKALE 387 >gi|261322945|ref|ZP_05962142.1| peptidoglycan binding domain-containing protein [Brucella neotomae 5K33] gi|261298925|gb|EEY02422.1| peptidoglycan binding domain-containing protein [Brucella neotomae 5K33] Length = 959 Score = 40.1 bits (92), Expect = 0.11, Method: Composition-based stats. Identities = 27/97 (27%), Positives = 50/97 (51%), Gaps = 7/97 (7%) Query: 3 YDSREKEVFLESEVVHNIRLQIEEISAILSKKSRDTPNQEIRTKIYII-----TARIIAL 57 Y SR +SE +HN+ QI I+ L++ SR+ EIR ++ I + R I L Sbjct: 293 YASRYGASSADSEAIHNLEQQIASIAQHLAQPSREL--AEIRPRLDSIERSLHSNREIVL 350 Query: 58 IVFREGEKSLIFDLLRTNQKTNSSLTQAIIQEIDTLQ 94 RE +S++ +L+ K+ +++ Q + ++ L+ Sbjct: 351 DAAREATESVVARMLQHGPKSETAIAQQLAADMKALE 387 >gi|261217417|ref|ZP_05931698.1| peptidoglycan-binding domain 1 protein [Brucella ceti M13/05/1] gi|261320291|ref|ZP_05959488.1| peptidoglycan-binding domain 1 protein [Brucella ceti M644/93/1] gi|260922506|gb|EEX89074.1| peptidoglycan-binding domain 1 protein [Brucella ceti M13/05/1] gi|261292981|gb|EEX96477.1| peptidoglycan-binding domain 1 protein [Brucella ceti M644/93/1] Length = 978 Score = 40.1 bits (92), Expect = 0.11, Method: Composition-based stats. Identities = 27/97 (27%), Positives = 50/97 (51%), Gaps = 7/97 (7%) Query: 3 YDSREKEVFLESEVVHNIRLQIEEISAILSKKSRDTPNQEIRTKIYII-----TARIIAL 57 Y SR +SE +HN+ QI I+ L++ SR+ EIR ++ I + R I L Sbjct: 293 YASRYGASSADSEAIHNLEQQIASIAQHLAQPSREL--AEIRPRLDSIERSLHSNREIVL 350 Query: 58 IVFREGEKSLIFDLLRTNQKTNSSLTQAIIQEIDTLQ 94 RE +S++ +L+ K+ +++ Q + ++ L+ Sbjct: 351 DAAREATESVVARMLQHGPKSETAIAQQLAADMKALE 387 >gi|261216267|ref|ZP_05930548.1| peptidoglycan-binding domain 1 protein [Brucella abortus bv. 3 str. Tulya] gi|260917874|gb|EEX84735.1| peptidoglycan-binding domain 1 protein [Brucella abortus bv. 3 str. Tulya] Length = 942 Score = 40.1 bits (92), Expect = 0.11, Method: Composition-based stats. Identities = 27/97 (27%), Positives = 50/97 (51%), Gaps = 7/97 (7%) Query: 3 YDSREKEVFLESEVVHNIRLQIEEISAILSKKSRDTPNQEIRTKIYII-----TARIIAL 57 Y SR +SE +HN+ QI I+ L++ SR+ EIR ++ I + R I L Sbjct: 293 YASRYGASSADSEAIHNLEQQIASIAQHLAQPSREL--AEIRPRLDSIERSLHSNREIVL 350 Query: 58 IVFREGEKSLIFDLLRTNQKTNSSLTQAIIQEIDTLQ 94 RE +S++ +L+ K+ +++ Q + ++ L+ Sbjct: 351 DAAREATESVVARMLQHGPKSETAIAQQLAADMKALE 387 >gi|260756423|ref|ZP_05868771.1| peptidoglycan-binding domain 1 protein [Brucella abortus bv. 6 str. 870] gi|260676531|gb|EEX63352.1| peptidoglycan-binding domain 1 protein [Brucella abortus bv. 6 str. 870] Length = 893 Score = 40.1 bits (92), Expect = 0.11, Method: Composition-based stats. Identities = 27/97 (27%), Positives = 50/97 (51%), Gaps = 7/97 (7%) Query: 3 YDSREKEVFLESEVVHNIRLQIEEISAILSKKSRDTPNQEIRTKIYII-----TARIIAL 57 Y SR +SE +HN+ QI I+ L++ SR+ EIR ++ I + R I L Sbjct: 293 YASRYGASSADSEAIHNLEQQIASIAQHLAQPSREL--AEIRPRLDSIERSLHSNREIVL 350 Query: 58 IVFREGEKSLIFDLLRTNQKTNSSLTQAIIQEIDTLQ 94 RE +S++ +L+ K+ +++ Q + ++