RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780890|ref|YP_003065303.1| hypothetical protein
CLIBASIA_03935 [Candidatus Liberibacter asiaticus str. psy62]
         (104 letters)



>gnl|CDD|182849 PRK10933, PRK10933, trehalose-6-phosphate hydrolase; Provisional.
          Length = 551

 Score = 27.4 bits (61), Expect = 0.95
 Identities = 11/20 (55%), Positives = 14/20 (70%), Gaps = 3/20 (15%)

Query: 25  EEISAILSKKSRD---TPNQ 41
           +E+ AIL+ KSRD   TP Q
Sbjct: 399 DELLAILASKSRDNSRTPMQ 418


>gnl|CDD|181807 PRK09374, rplB, 50S ribosomal protein L2; Validated.
          Length = 276

 Score = 25.4 bits (57), Expect = 2.9
 Identities = 9/18 (50%), Positives = 13/18 (72%), Gaps = 1/18 (5%)

Query: 51  TARIIALIVFREGEKSLI 68
           +ARI AL+ + +GEK  I
Sbjct: 88  SARI-ALLHYADGEKRYI 104


>gnl|CDD|161981 TIGR00656, asp_kin_monofn, aspartate kinase, monofunctional class. 
           The Lys-sensitive enzyme of Bacillus subtilis resembles
           the E. coli form but is an alpha 2/beta 2
           heterotetramer, where the beta subunit is translated
           from an in-phase alternative initiator at Met-246. The
           protein slr0657 from Synechocystis PCC6803 is extended
           by a duplication of the C-terminal region corresponding
           to the beta chain. Incorporation of a second copy of the
           C-terminal domain may be quite common in this subgroup
           of aspartokinases.
          Length = 401

 Score = 25.4 bits (56), Expect = 3.3
 Identities = 12/68 (17%), Positives = 28/68 (41%), Gaps = 4/68 (5%)

Query: 25  EEISAILSKKSRDTPNQEIRTKIYIITARIIALIVFREGEKSLIFDLLRTNQKTNSSLTQ 84
           + I   ++ + RD    E+ +    +++ + +  +   G K++  D       T+ +   
Sbjct: 55  KAIRDAITPRERD----ELVSHGERLSSALFSGALRDLGVKAIWLDGGEAGIITDDNFGN 110

Query: 85  AIIQEIDT 92
           A I  I T
Sbjct: 111 AKIDIIAT 118


>gnl|CDD|150842 pfam10231, DUF2315, Uncharacterized conserved protein (DUF2315). 
          This is a family of small conserved proteins found from
          worms to humans. The function is not known.
          Length = 127

 Score = 24.8 bits (54), Expect = 5.6
 Identities = 10/25 (40%), Positives = 15/25 (60%)

Query: 5  SREKEVFLESEVVHNIRLQIEEISA 29
          S+EKE F+  E +     + EE+SA
Sbjct: 55 SKEKEAFIRKEQLRKESGRTEEVSA 79


>gnl|CDD|162843 TIGR02403, trehalose_treC, alpha,alpha-phosphotrehalase.  Trehalose
           is a glucose disaccharide that serves in many biological
           systems as a compatible solute for protection against
           hyperosmotic and thermal stress. This family describes
           trehalose-6-phosphate hydrolase, product of the treC (or
           treA) gene, which is often found together with a
           trehalose uptake transporter and a trehalose operon
           repressor.
          Length = 543

 Score = 24.6 bits (54), Expect = 6.5
 Identities = 12/20 (60%), Positives = 13/20 (65%), Gaps = 3/20 (15%)

Query: 25  EEISAILSKKSRD---TPNQ 41
           EE  AIL +KSRD   TP Q
Sbjct: 393 EEALAILKQKSRDNSRTPMQ 412


>gnl|CDD|180382 PRK06069, sdhA, succinate dehydrogenase flavoprotein subunit;
           Reviewed.
          Length = 577

 Score = 24.2 bits (53), Expect = 7.2
 Identities = 11/40 (27%), Positives = 18/40 (45%), Gaps = 2/40 (5%)

Query: 25  EEISAILSKKSRDTPNQEIRTKIYIITARIIALIVFREGE 64
           + I   L KK    P+ EIR ++  I  +     +FR+  
Sbjct: 433 KRIFDKLLKKEGGEPSYEIRRELNDIMDK--NFGIFRDES 470


>gnl|CDD|162706 TIGR02104, pulA_typeI, pullulanase, type I.  Pullulan is an
           unusual, industrially important polysaccharide in which
           short alpha-1,4 chains (maltotriose) are connected in
           alpha-1,6 linkages. Enzymes that cleave alpha-1,6
           linkages in pullulan and release maltotriose are called
           pullulanases although pullulan itself may not be the
           natural substrate. This family consists of pullulanases
           related to the subfamilies described in TIGR02102 and
           TIGR02103 but having a different domain architecture
           with shorter sequences. Members are called type I
           pullulanases.
          Length = 605

 Score = 24.2 bits (53), Expect = 7.8
 Identities = 11/36 (30%), Positives = 16/36 (44%), Gaps = 8/36 (22%)

Query: 63  GEKSLIFDLLRTN-----QKTNSSL---TQAIIQEI 90
           G++  + DL RTN     +     L     AII E+
Sbjct: 98  GKRGAVIDLERTNPEGWEKDHRPRLENPEDAIIYEL 133


>gnl|CDD|178730 PLN03188, PLN03188, kinesin-12 family protein; Provisional.
          Length = 1320

 Score = 24.1 bits (52), Expect = 7.9
 Identities = 10/24 (41%), Positives = 16/24 (66%), Gaps = 2/24 (8%)

Query: 2    FYDSREKEVFLESEVVHNIRLQIE 25
            FYD  E+EV LE   + ++R Q++
Sbjct: 982  FYDMGEREVLLEE--IQDLRSQLQ 1003


>gnl|CDD|179102 PRK00733, hppA, membrane-bound proton-translocating
           pyrophosphatase; Validated.
          Length = 666

 Score = 23.9 bits (53), Expect = 8.6
 Identities = 6/22 (27%), Positives = 11/22 (50%)

Query: 15  EVVHNIRLQIEEISAILSKKSR 36
            +V  +R Q  EI  I+   ++
Sbjct: 514 AMVEEVRRQFREIPGIMEGTAK 535


>gnl|CDD|162131 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein.
            
          Length = 1394

 Score = 23.9 bits (52), Expect = 9.0
 Identities = 8/30 (26%), Positives = 15/30 (50%)

Query: 9    EVFLESEVVHNIRLQIEEISAILSKKSRDT 38
            EV+  S     ++ +++ + A LSK   D 
Sbjct: 1035 EVWRNSSEYQAVKNELDRLEAELSKAEDDN 1064


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.319    0.133    0.345 

Gapped
Lambda     K      H
   0.267   0.0713    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 1,544,348
Number of extensions: 84777
Number of successful extensions: 175
Number of sequences better than 10.0: 1
Number of HSP's gapped: 175
Number of HSP's successfully gapped: 33
Length of query: 104
Length of database: 5,994,473
Length adjustment: 71
Effective length of query: 33
Effective length of database: 4,460,305
Effective search space: 147190065
Effective search space used: 147190065
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.1 bits)