HHsearch alignment for GI: 254780891 and conserved domain: COG2972

>COG2972 Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms].
Probab=99.49  E-value=3.4e-12  Score=97.37  Aligned_cols=188  Identities=15%  Similarity=0.075  Sum_probs=117.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHH
Q ss_conf             96768799999774545422799999999999614430147898889999999986311001122320000000001344
Q gi|254780891|r    9 LSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ   88 (215)
Q Consensus         9 ~~~~~laallas~IaHdlrtPL~~I~~~~elL~~~~~~~~~~~~i~~~~~~~~~l~~~~r~~~~~~~~~~~~~~~~~~~~   88 (215)
T Consensus       253 ~~~~el~~lqsqi~pHfL~NtL~~I~~~~~~~~----~-------~~~~~~v~~l~~llR~~l~~~--~~~~~l~~E-~~  318 (456)
T COG2972         253 QLEAELRALQSQINPHFLYNTLETIRMLAEEDD----P-------EEAAKVVKALSKLLRYSLSNL--DNIVTLEIE-LL  318 (456)
T ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC----H-------HHHHHHHHHHHHHHHHHHHCC--CCCCCHHHH-HH
T ss_conf             999999997721261689999999999987357----9-------999999999999999750065--553419999-99


Q ss_pred             HHHHHHH-----CCCCCCCCCCCCCCCCC-HHHHHHHHHHHHHHHHHH----HHHCCCCCCCCCCCCCEEEEEEECCCCC
Q ss_conf             4443220-----12233211000000100-012344456766468765----3200111112355772047999878984
Q gi|254780891|r   89 VIEDFIA-----VDKRVQVSWTGEKIDLS-RERAKILLNLFMVAHASL----PRGGKVTISVQDSKNENIFSLKINGNLA  158 (215)
Q Consensus        89 ~~~~~~~-----~~~~~~~~~~~~~~~~~-~~~~qvl~NLi~NA~~a~----~~gg~I~i~~~~~~~~~~i~V~D~G~Gi  158 (215)
T Consensus       319 ~~~kyl~iq~~r~~~~le~~~~i~~~~~~l~~p~l~lqpLvENAi~hgi~~~~~~~~I~i~~~~~~~~i~i~i~Dng~g~  398 (456)
T COG2972         319 LIEKYLEIQKLRIGDRLEVPLPIDEELEPLIDPKLVLQPLVENAIEHGIEPKRPGGSIAISAKKQDDVIQISISDNGPGI  398 (456)
T ss_pred             HHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCEEEEEECCCCCCC
T ss_conf             99999999981998799997203753320232788988879999998620469995799999405879999977699995


Q ss_pred             CCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCE--EEEEEECCCCEEEEEEEEC
Q ss_conf             40245887405454578998720499999999970987--9999877992699999419
Q gi|254780891|r  159 RFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIR--LLPEIIDDHNVVLSALLEK  215 (215)
Q Consensus       159 ~~~e~~~~~~~~~~~~~~~g~GlGl~~~~~i~~~~gG~--i~v~~~~~~g~~f~~~l~~  215 (215)
T Consensus       399 ~-~~~~~~~~~~~~~r----~giGL~Nv~~rl~~~~g~~~~~i~s~~~~gt~v~~~~~~  452 (456)
T COG2972         399 D-EEKLEGLSTKGENR----SGIGLSNVKERLKLYFGEPGLSIDSQPGKGTFVQIIIPK  452 (456)
T ss_pred             C-HHHHHHHHHCCCCC----CCCCHHHHHHHHHHCCCCCCEEEEEECCCCEEEEEEEEH
T ss_conf             8-78886676415777----773588799999871897621799964895899999863