HHsearch alignment for GI: 254780891 and conserved domain: COG3290
>COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms].
Probab=99.91 E-value=1.4e-22 Score=163.37 Aligned_cols=197 Identities=16% Similarity=0.130 Sum_probs=142.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHH
Q ss_conf 99676879999977454542279999999999961443014789888999999998631100112232000000000134
Q gi|254780891|r 8 NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE 87 (215)
Q Consensus 8 ~~~~~~laallas~IaHdlrtPL~~I~~~~elL~~~~~~~~~~~~i~~~~~~~~~l~~~~r~~~~~~~~~~~~~~~~~~~ 87 (215)
T Consensus 326 qLt~vr~ya~aLRaq~HEfmNkLhtI~GLlql~----~yd~a~~~I~~~~~~qq~~~~~l~~~i------~~~~lAg~Ll 395 (537)
T COG3290 326 QLTGVRQYAEALRAQSHEFMNKLHTILGLLQLG----EYDDALDYIQQESEEQQELIDSLSEKI------KDPVLAGFLL 395 (537)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHH
T ss_conf 999899999999885288888899998788505----378999999998764045689999851------2088899988
Q ss_pred HHHHHHHHCCCCCCCCCCCC-----CCCCCHHHHHHHHHHHHHHHHHHH---HHCCCCCCCCCCCCCEEEEEEECCCCCC
Q ss_conf 44443220122332110000-----001000123444567664687653---2001111123557720479998789844
Q gi|254780891|r 88 QVIEDFIAVDKRVQVSWTGE-----KIDLSRERAKILLNLFMVAHASLP---RGGKVTISVQDSKNENIFSLKINGNLAR 159 (215)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~qvl~NLi~NA~~a~~---~gg~I~i~~~~~~~~~~i~V~D~G~Gi~ 159 (215)
T Consensus 396 gK~~rArElgv~l~Id~~S~l~~~p~~~~~~~litIlGNLidNA~eA~~~~~~~k~I~l~i~~~~~~lvieV~D~G~GI~ 475 (537)
T COG3290 396 GKISRARELGVSLIIDPNSQLPQLPSELQPHDLVTILGNLIDNALEALLAPEENKEIELSLSDRGDELVIEVADTGPGIP 475 (537)
T ss_pred HHHHHHHHCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCEEEEEEECCCCCCC
T ss_conf 68999997296599757986788987667678999999988778888515578967999998369879999957999989
Q ss_pred CHHHHHHHHCCCCCCCC-CCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEEC
Q ss_conf 02458874054545789-987204999999999709879999877992699999419
Q gi|254780891|r 160 FPEKFTQIVDGNVESTI-DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 (215)
Q Consensus 160 ~~e~~~~~~~~~~~~~~-~g~GlGl~~~~~i~~~~gG~i~v~~~~~~g~~f~~~l~~ 215 (215)
T Consensus 476 -~~~~~~iFe~G~Stk~~~~rGiGL~Lvkq~V~~~~G~I~~~s~~~~Gt~F~i~iP~ 531 (537)
T COG3290 476 -PEVRDKIFEKGVSTKNTGGRGIGLYLVKQLVERLGGSIEVESEKGQGTRFSIYIPK 531 (537)
T ss_pred -HHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCEEEEEECCC
T ss_conf -68877787348414677887612889999998749669995078981499998888