HHsearch alignment for GI: 254780891 and conserved domain: COG3290

>COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms].
Probab=99.91  E-value=1.4e-22  Score=163.37  Aligned_cols=197  Identities=16%  Similarity=0.130  Sum_probs=142.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHH
Q ss_conf             99676879999977454542279999999999961443014789888999999998631100112232000000000134
Q gi|254780891|r    8 NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE   87 (215)
Q Consensus         8 ~~~~~~laallas~IaHdlrtPL~~I~~~~elL~~~~~~~~~~~~i~~~~~~~~~l~~~~r~~~~~~~~~~~~~~~~~~~   87 (215)
T Consensus       326 qLt~vr~ya~aLRaq~HEfmNkLhtI~GLlql~----~yd~a~~~I~~~~~~qq~~~~~l~~~i------~~~~lAg~Ll  395 (537)
T COG3290         326 QLTGVRQYAEALRAQSHEFMNKLHTILGLLQLG----EYDDALDYIQQESEEQQELIDSLSEKI------KDPVLAGFLL  395 (537)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHH
T ss_conf             999899999999885288888899998788505----378999999998764045689999851------2088899988


Q ss_pred             HHHHHHHHCCCCCCCCCCCC-----CCCCCHHHHHHHHHHHHHHHHHHH---HHCCCCCCCCCCCCCEEEEEEECCCCCC
Q ss_conf             44443220122332110000-----001000123444567664687653---2001111123557720479998789844
Q gi|254780891|r   88 QVIEDFIAVDKRVQVSWTGE-----KIDLSRERAKILLNLFMVAHASLP---RGGKVTISVQDSKNENIFSLKINGNLAR  159 (215)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~qvl~NLi~NA~~a~~---~gg~I~i~~~~~~~~~~i~V~D~G~Gi~  159 (215)
T Consensus       396 gK~~rArElgv~l~Id~~S~l~~~p~~~~~~~litIlGNLidNA~eA~~~~~~~k~I~l~i~~~~~~lvieV~D~G~GI~  475 (537)
T COG3290         396 GKISRARELGVSLIIDPNSQLPQLPSELQPHDLVTILGNLIDNALEALLAPEENKEIELSLSDRGDELVIEVADTGPGIP  475 (537)
T ss_pred             HHHHHHHHCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCEEEEEEECCCCCCC
T ss_conf             68999997296599757986788987667678999999988778888515578967999998369879999957999989


Q ss_pred             CHHHHHHHHCCCCCCCC-CCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEEC
Q ss_conf             02458874054545789-987204999999999709879999877992699999419
Q gi|254780891|r  160 FPEKFTQIVDGNVESTI-DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK  215 (215)
Q Consensus       160 ~~e~~~~~~~~~~~~~~-~g~GlGl~~~~~i~~~~gG~i~v~~~~~~g~~f~~~l~~  215 (215)
T Consensus       476 -~~~~~~iFe~G~Stk~~~~rGiGL~Lvkq~V~~~~G~I~~~s~~~~Gt~F~i~iP~  531 (537)
T COG3290         476 -PEVRDKIFEKGVSTKNTGGRGIGLYLVKQLVERLGGSIEVESEKGQGTRFSIYIPK  531 (537)
T ss_pred             -HHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCEEEEEECCC
T ss_conf             -68877787348414677887612889999998749669995078981499998888