HHsearch alignment for GI: 254780891 and conserved domain: COG3920
>COG3920 Signal transduction histidine kinase [Signal transduction mechanisms].
Probab=99.14 E-value=2.1e-08 Score=73.21 Aligned_cols=183 Identities=15% Similarity=0.063 Sum_probs=117.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC-CCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 999774545422799999999999614430147898889999999986311001122-3200000000013444443220
Q gi|254780891|r 17 LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGY-TGSVDSLIGLGDIEQVIEDFIA 95 (215)
Q Consensus 17 llas~IaHdlrtPL~~I~~~~elL~~~~~~~~~~~~i~~~~~~~~~l~~~~r~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 95 (215)
T Consensus 21 ~ll~Ei~HRVKNnLqiIsSll~lq~r~~~~~-~~e~~~~~~~Ri~sla~~He~L~~s~~~~~~~~~y~~~L~~~l~~~~- 98 (221)
T COG3920 21 LLLREIHHRVKNNLQIISSLLRLQARKFEDE-VLEALRESQNRIQSLALIHELLYKSGDDTWDFASYLELLASNLFPSY- 98 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHC-
T ss_conf 9999999998879999999999777523667-89999999889999999999980688651759999999999988762-
Q ss_pred CCCCCCCCCCCCC-CCCC----HHHHHHHHHHHHHHHHHHHH---HCCCCCCCCCCCCC--EEEEEEECCCCCCCHHHHH
Q ss_conf 1223321100000-0100----01234445676646876532---00111112355772--0479998789844024588
Q gi|254780891|r 96 VDKRVQVSWTGEK-IDLS----RERAKILLNLFMVAHASLPR---GGKVTISVQDSKNE--NIFSLKINGNLARFPEKFT 165 (215)
Q Consensus 96 ~~~~~~~~~~~~~-~~~~----~~~~qvl~NLi~NA~~a~~~---gg~I~i~~~~~~~~--~~i~V~D~G~Gi~~~e~~~ 165 (215)
T Consensus 99 ~~~~~~~~~~~~~~~~l~~d~A~~Lgliv~EL~tNa~Khaf~~~~~G~I~I~~~~~~~~~~~~l~v~deg~G~~--~~~- 175 (221)
T COG3920 99 GGKDIRLILDSGPNVFLDPDTAVPLGLIVHELVTNALKHAFLSRPGGEIRITLSREGDGGRFLLTVWDEGGGPP--VEA- 175 (221)
T ss_pred CCCCCEEEEECCCCEEECHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCEEEEEEEECCCCCC--CCC-
T ss_conf 78875278822886226736788999999999998898617888997799999984799717999987898988--888-
Q ss_pred HHHCCCCCCCCCCCCHHHHHHHHHH-HHCCCEEEEEEECCCCEEEEEEEEC
Q ss_conf 7405454578998720499999999-9709879999877992699999419
Q gi|254780891|r 166 QIVDGNVESTIDSHDIQFYYVILLA-HENKIRLLPEIIDDHNVVLSALLEK 215 (215)
Q Consensus 166 ~~~~~~~~~~~~g~GlGl~~~~~i~-~~~gG~i~v~~~~~~g~~f~~~l~~ 215 (215)
T Consensus 176 --------~~-~~~g~G~~Lv~~lv~~q~~g~~~~~~~~--Gt~~~i~~~~ 215 (221)
T COG3920 176 --------PL-SRGGFGLQLVERLVPEQLGGELEDERPD--GTEFRLRFPL 215 (221)
T ss_pred --------CC-CCCCCHHHHHHHHHHHHCCCEEEEECCC--CEEEEEEEEC
T ss_conf --------87-8998379999999999679727997499--7799999886