HHsearch alignment for GI: 254780891 and conserved domain: COG4564
>COG4564 Signal transduction histidine kinase [Signal transduction mechanisms].
Probab=98.87 E-value=9.2e-08 Score=69.21 Aligned_cols=105 Identities=14% Similarity=0.060 Sum_probs=80.5
Q ss_pred CCCCCCCCCCCCCC----CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHCCCCC
Q ss_conf 23321100000010----00123444567664687653200111112355772047999878984402458874054545
Q gi|254780891|r 98 KRVQVSWTGEKIDL----SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE 173 (215)
Q Consensus 98 ~~~~~~~~~~~~~~----~~~~~qvl~NLi~NA~~a~~~gg~I~i~~~~~~~~~~i~V~D~G~Gi~~~e~~~~~~~~~~~ 173 (215)
T Consensus 339 ~~itle~~~~p~~l~~e~~talyRv~QEaltNIErHa-~Atrv~ill~~~~d~vql~vrDnG~GF~~~~~---------- 407 (459)
T COG4564 339 IEITLEFDTQPGKLKPEVATALYRVVQEALTNIERHA-GATRVTILLQQMGDMVQLMVRDNGVGFSVKEA---------- 407 (459)
T ss_pred EEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHC-CCEEEEEEECCCCCCEEEEEECCCCCCCCHHH----------
T ss_conf 3799970578644782788899999999987788606-87179998615776069998238998561653----------
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEEC
Q ss_conf 789987204999999999709879999877992699999419
Q gi|254780891|r 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 (215)
Q Consensus 174 ~~~~g~GlGl~~~~~i~~~~gG~i~v~~~~~~g~~f~~~l~~ 215 (215)
T Consensus 408 -~~~~~GiGLRNMrERma~~GG~~~v~s~p~-GTel~v~Lp~ 447 (459)
T COG4564 408 -LQKRHGIGLRNMRERMAHFGGELEVESSPQ-GTELTVLLPL 447 (459)
T ss_pred -CCCCCCCCCCCHHHHHHHHCCEEEEEECCC-CCEEEEEECC
T ss_conf -167556451009999997486589975698-7279998140