HHsearch alignment for GI: 254780891 and conserved domain: PRK04069
>PRK04069 serine-protein kinase RsbW; Provisional.
Probab=98.32 E-value=3.5e-06 Score=59.14 Aligned_cols=88 Identities=11% Similarity=0.065 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHHH---HHCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHCCCCC----CCCCCCCHHHHHHHHHH
Q ss_conf 44567664687653---200111112355772047999878984402458874054545----78998720499999999
Q gi|254780891|r 118 ILLNLFMVAHASLP---RGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE----STIDSHDIQFYYVILLA 190 (215)
Q Consensus 118 vl~NLi~NA~~a~~---~gg~I~i~~~~~~~~~~i~V~D~G~Gi~~~e~~~~~~~~~~~----~~~~g~GlGl~~~~~i~ 190 (215)
T Consensus 46 AV~EA~tNaI~Hay~~~~~~~i~i~~~~~~~~l~i~V~D~G~gfD-~~~~~~~~~P~~~~~~l~~~~~gGlGl~lI~~lm 124 (158)
T PRK04069 46 AVSEACTNAVQHAYKEEEVGEINIRFEIYEDRLEIVVADNGDSFD-YETTKSKIGPYDPSEPIDDLREGGLGLFLIETLM 124 (158)
T ss_pred HHHHHHHHHHHHHCCCCCCCEEEEEEEEECCEEEEEEEECCCCCC-HHHCCCCCCCCCCCCCHHHCCCCCCHHHHHHHHC
T ss_conf 999999999997515699947999999959999999999174879-5674324588888886111367874099999752
Q ss_pred HHCCCEEEEEEECCCCEEEEEE
Q ss_conf 9709879999877992699999
Q gi|254780891|r 191 HENKIRLLPEIIDDHNVVLSAL 212 (215)
Q Consensus 191 ~~~gG~i~v~~~~~~g~~f~~~ 212 (215)
T Consensus 125 De----V~~~~--~~Gt~v~m~ 140 (158)
T PRK04069 125 DD----VTVYK--DSGVTVSMT 140 (158)
T ss_pred CE----EEEEE--CCCEEEEEE
T ss_conf 55----89990--898299999