HHsearch alignment for GI: 254780891 and conserved domain: PRK10618
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional.
Probab=99.52 E-value=3e-12 Score=97.72 Aligned_cols=195 Identities=14% Similarity=0.121 Sum_probs=130.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH----HHHCCCCCCCCCCCCCCCCHHH-HHHH
Q ss_conf 9997745454227999999999996144301478988899999999863----1100112232000000000134-4444
Q gi|254780891|r 17 LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLK----FMRLAFGYTGSVDSLIGLGDIE-QVIE 91 (215)
Q Consensus 17 llas~IaHdlrtPL~~I~~~~elL~~~~~~~~~~~~i~~~~~~~~~l~~----~~r~~~~~~~~~~~~~~~~~~~-~~~~ 91 (215)
T Consensus 452 ~~l~Ni~~el~~Pl~~l~~~~~~l~~~~~~~-~l~~L~~qs~~i~~lidnI~Lln~LEsq~W~~~~~~Fsl~~Lid~~l~ 530 (881)
T PRK10618 452 AFLQNIGDELKEPVQSLAELAAQLNAPESQQ-LLKQLAEQADVLVRLIDNIQLANMLENDEWKSEQTLFSLQDLIDEVVP 530 (881)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
T ss_conf 9999999998778999999999862524467-999999999999999988999988860567656771049999999999
Q ss_pred HHHH----CCCCCCCCCCCCC----CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC---CCCEEEEEEECCCCCCC
Q ss_conf 3220----1223321100000----01000123444567664687653200111112355---77204799987898440
Q gi|254780891|r 92 DFIA----VDKRVQVSWTGEK----IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDS---KNENIFSLKINGNLARF 160 (215)
Q Consensus 92 ~~~~----~~~~~~~~~~~~~----~~~~~~~~qvl~NLi~NA~~a~~~gg~I~i~~~~~---~~~~~i~V~D~G~Gi~~ 160 (215)
T Consensus 531 e~Lp~i~~KGL~L~~hn~l~~~~~~~gD~~aLrkil~lLl~YaitTT~~-GKItl~v~~~~~~~~~l~i~i~DTG~Gls- 608 (881)
T PRK10618 531 EVLPAIKRKGLQLLIHNHLKANDMRRGDRDALRKILLLLLQYAVTTTQY-GKITLEVDQDESSEERLTFRILDTGEGVS- 608 (881)
T ss_pred HHHHHHHHCCCEEEEECCCCHHHHCCCCHHHHHHHHHHHHHHHHHCCCC-CEEEEEEECCCCCCCEEEEEEECCCCCCC-
T ss_conf 8768987427033323479889970478999999999999888111445-25999982587778638999954788878-
Q ss_pred HHHHHHHHCCCCC-----CCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEE
Q ss_conf 2458874054545-----78998720499999999970987999987799269999941
Q gi|254780891|r 161 PEKFTQIVDGNVE-----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 (215)
Q Consensus 161 ~e~~~~~~~~~~~-----~~~~g~GlGl~~~~~i~~~~gG~i~v~~~~~~g~~f~~~l~ 214 (215)
T Consensus 609 ~~El~Nl~~PFl~~t~~Dry~~~SGlTf~LC~qLc~KlgG~l~I~Sk~~iGT~Y~i~lp 667 (881)
T PRK10618 609 IHEIDNLHFPFLNQTQGDRYGKASGLTFWLCNQLCRKLGGHLNIKSREDLGTRYSVHLK 667 (881)
T ss_pred HHHHHHCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHCCEEEEECCCCCCCCEEEEEC
T ss_conf 88885537977683122111378872999999999984896788415677664799842