HHsearch alignment for GI: 254780891 and conserved domain: PRK11086
>PRK11086 sensory histidine kinase DcuS; Provisional.
Probab=100.00 E-value=1.3e-32 Score=226.94 Aligned_cols=192 Identities=15% Similarity=0.074 Sum_probs=132.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH----HHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 9676879999977454542279999999999961443014789888999999----998631100112232000000000
Q gi|254780891|r 9 LSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA----IIRLKFMRLAFGYTGSVDSLIGLG 84 (215)
Q Consensus 9 ~~~~~laallas~IaHdlrtPL~~I~~~~elL~~~~~~~~~~~~i~~~~~~~----~~l~~~~r~~~~~~~~~~~~~~~~ 84 (215)
T Consensus 332 L~~v~~~~e~Lra~sHE~~n~L~~I~Gll~l~~~d----~~~~~i~~~~~~~~~~~~~l~~~i~~----------p~la~ 397 (541)
T PRK11086 332 LDGVVNYADALRAQSHEFMNKLHVILGLLHLKSYD----QLEDYILKTANNYQEEIGSLLGKIKS----------PVIAG 397 (541)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH----HHHHHHHHHHHHHHHHHHHHHHHCCC----------HHHHH
T ss_conf 99999999998761166640579998888643089----99999999999999999999986116----------88899
Q ss_pred HHHHHHHHHHHCCCCCCCCCCC--CCCCCC---HHHHHHHHHHHHHHHHHHH--HHCCCCCCCCCCCCCEEEEEEECCCC
Q ss_conf 1344444322012233211000--000100---0123444567664687653--20011111235577204799987898
Q gi|254780891|r 85 DIEQVIEDFIAVDKRVQVSWTG--EKIDLS---RERAKILLNLFMVAHASLP--RGGKVTISVQDSKNENIFSLKINGNL 157 (215)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~---~~~~qvl~NLi~NA~~a~~--~gg~I~i~~~~~~~~~~i~V~D~G~G 157 (215)
T Consensus 398 ~Llgk~~~a~E~gi~L~i~~~~~l~~~~~~~~~~~l~tVlgNLidNAi~A~~~~~~g~V~v~l~~~~~~l~i~V~D~G~G 477 (541)
T PRK11086 398 FLLGKISRARELGITLIISEDSQLPDSDDEDQVHELITILGNLIENALEAVSNEEGGEISVSLHYRHGWLHIEVSDDGPG 477 (541)
T ss_pred HHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCEEEEEEEECCCC
T ss_conf 99988999996698599706776778886466657999999999999997316899679999998899899999977988
Q ss_pred CCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEEC
Q ss_conf 4402458874054545789987204999999999709879999877992699999419
Q gi|254780891|r 158 ARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 (215)
Q Consensus 158 i~~~e~~~~~~~~~~~~~~~g~GlGl~~~~~i~~~~gG~i~v~~~~~~g~~f~~~l~~ 215 (215)
T Consensus 478 I~-~e~~~~IFerg~StK~~g~GLGLaIvk~iVe~~gG~I~veS~~g~GT~Fti~LP~ 534 (541)
T PRK11086 478 IA-PEEIEAIFDKGYSTKGSNRGVGLYLVKQSVENLGGSIAVESEPGIGTQFFVQIPW 534 (541)
T ss_pred CC-HHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCEEEEEEECC
T ss_conf 59-7799887179874189991103999999999859989999669993799999606