HHsearch alignment for GI: 254780891 and conserved domain: PRK11086

>PRK11086 sensory histidine kinase DcuS; Provisional.
Probab=100.00  E-value=1.3e-32  Score=226.94  Aligned_cols=192  Identities=15%  Similarity=0.074  Sum_probs=132.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH----HHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf             9676879999977454542279999999999961443014789888999999----998631100112232000000000
Q gi|254780891|r    9 LSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA----IIRLKFMRLAFGYTGSVDSLIGLG   84 (215)
Q Consensus         9 ~~~~~laallas~IaHdlrtPL~~I~~~~elL~~~~~~~~~~~~i~~~~~~~----~~l~~~~r~~~~~~~~~~~~~~~~   84 (215)
T Consensus       332 L~~v~~~~e~Lra~sHE~~n~L~~I~Gll~l~~~d----~~~~~i~~~~~~~~~~~~~l~~~i~~----------p~la~  397 (541)
T PRK11086        332 LDGVVNYADALRAQSHEFMNKLHVILGLLHLKSYD----QLEDYILKTANNYQEEIGSLLGKIKS----------PVIAG  397 (541)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH----HHHHHHHHHHHHHHHHHHHHHHHCCC----------HHHHH
T ss_conf             99999999998761166640579998888643089----99999999999999999999986116----------88899


Q ss_pred             HHHHHHHHHHHCCCCCCCCCCC--CCCCCC---HHHHHHHHHHHHHHHHHHH--HHCCCCCCCCCCCCCEEEEEEECCCC
Q ss_conf             1344444322012233211000--000100---0123444567664687653--20011111235577204799987898
Q gi|254780891|r   85 DIEQVIEDFIAVDKRVQVSWTG--EKIDLS---RERAKILLNLFMVAHASLP--RGGKVTISVQDSKNENIFSLKINGNL  157 (215)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~---~~~~qvl~NLi~NA~~a~~--~gg~I~i~~~~~~~~~~i~V~D~G~G  157 (215)
T Consensus       398 ~Llgk~~~a~E~gi~L~i~~~~~l~~~~~~~~~~~l~tVlgNLidNAi~A~~~~~~g~V~v~l~~~~~~l~i~V~D~G~G  477 (541)
T PRK11086        398 FLLGKISRARELGITLIISEDSQLPDSDDEDQVHELITILGNLIENALEAVSNEEGGEISVSLHYRHGWLHIEVSDDGPG  477 (541)
T ss_pred             HHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCEEEEEEEECCCC
T ss_conf             99988999996698599706776778886466657999999999999997316899679999998899899999977988


Q ss_pred             CCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEEC
Q ss_conf             4402458874054545789987204999999999709879999877992699999419
Q gi|254780891|r  158 ARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK  215 (215)
Q Consensus       158 i~~~e~~~~~~~~~~~~~~~g~GlGl~~~~~i~~~~gG~i~v~~~~~~g~~f~~~l~~  215 (215)
T Consensus       478 I~-~e~~~~IFerg~StK~~g~GLGLaIvk~iVe~~gG~I~veS~~g~GT~Fti~LP~  534 (541)
T PRK11086        478 IA-PEEIEAIFDKGYSTKGSNRGVGLYLVKQSVENLGGSIAVESEPGIGTQFFVQIPW  534 (541)
T ss_pred             CC-HHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCEEEEEEECC
T ss_conf             59-7799887179874189991103999999999859989999669993799999606