HHsearch alignment for GI: 254780891 and conserved domain: PRK13837
>PRK13837 two-component VirA-like sensor kinase; Provisional.
Probab=100.00 E-value=2e-41 Score=282.97 Aligned_cols=208 Identities=14% Similarity=0.084 Sum_probs=167.1
Q ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHCC----CCHHHHHHHHHHHHHHHHH----HHHHHCCCCCCCC
Q ss_conf 99967687999--997745454227999999999996144----3014789888999999998----6311001122320
Q gi|254780891|r 7 FNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVG----IEDEVMQLIRLSSMSAIIR----LKFMRLAFGYTGS 76 (215)
Q Consensus 7 ~~~~~~~laal--las~IaHdlrtPL~~I~~~~elL~~~~----~~~~~~~~i~~~~~~~~~l----~~~~r~~~~~~~~ 76 (215)
T Consensus 443 qL~qAQKmEAiG~LAgGIAHDFNNiLt~I~G~aeLa~~~l~~~~~~~~~L~~I~~aa~Ra~~Lv~qLL~FSR~~~~~~~~ 522 (831)
T PRK13837 443 RLEHARRLEAVGTLASGIAHNFNNILGAILGYAEMALNKLRRHSRARRHIDEIISSGDRARLIIDQILTFGRKGERRTKP 522 (831)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCE
T ss_conf 99999999999999989999870089999999999862069984778999999999999999999999985899997717
Q ss_pred CCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCC---CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC-----------
Q ss_conf 00000000134444432201223321100000---0100012344456766468765320011111235-----------
Q gi|254780891|r 77 VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK---IDLSRERAKILLNLFMVAHASLPRGGKVTISVQD----------- 142 (215)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~qvl~NLi~NA~~a~~~gg~I~i~~~~----------- 142 (215)
T Consensus 523 vdl~~lv~e~~~llr~~l~~~I~l~~~~~~~~~~V~aD~~QL~QVllNL~~NA~dAM~~gG~l~I~~~~~~~~~~~~~~~ 602 (831)
T PRK13837 523 FSLSELVTEIAPLLRVSLPPTVELDFDFDQEPAVVEGNPAQLQQVILNLCKNAAQAMDENGRVDIRLSRVDLRKPKVLAH 602 (831)
T ss_pred ECHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCEEEECHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCHHHHCC
T ss_conf 74999999999999987589869999718988538887999999999999999997679986999985553363232115
Q ss_pred ----CCCCEEEEEEECCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEEC
Q ss_conf ----5772047999878984402458874054545789987204999999999709879999877992699999419
Q gi|254780891|r 143 ----SKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 (215)
Q Consensus 143 ----~~~~~~i~V~D~G~Gi~~~e~~~~~~~~~~~~~~~g~GlGl~~~~~i~~~~gG~i~v~~~~~~g~~f~~~l~~ 215 (215)
T Consensus 603 ~~~~~G~yv~L~VsDtG~GI~-~e~l~RIFEPFFTTK~~GTGLGLAvV~gIV~~hgG~I~V~S~pG~GTtF~v~LP~ 678 (831)
T PRK13837 603 GTAPPGRYVLLRVSDTGRGID-EAVLPHIFEPFFTTRARGTGLGLATVHGIVSAHAGYIDVQSTVGRGTRFDVYLPP 678 (831)
T ss_pred CCCCCCCEEEEEEEECCCCCC-HHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCEEEEEEEEC
T ss_conf 778998989999986799989-8999660489867889988746999999999869869997269997189998317