HHsearch alignment for GI: 254780891 and conserved domain: PRK13837

>PRK13837 two-component VirA-like sensor kinase; Provisional.
Probab=100.00  E-value=2e-41  Score=282.97  Aligned_cols=208  Identities=14%  Similarity=0.084  Sum_probs=167.1

Q ss_pred             HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHCC----CCHHHHHHHHHHHHHHHHH----HHHHHCCCCCCCC
Q ss_conf             99967687999--997745454227999999999996144----3014789888999999998----6311001122320
Q gi|254780891|r    7 FNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVG----IEDEVMQLIRLSSMSAIIR----LKFMRLAFGYTGS   76 (215)
Q Consensus         7 ~~~~~~~laal--las~IaHdlrtPL~~I~~~~elL~~~~----~~~~~~~~i~~~~~~~~~l----~~~~r~~~~~~~~   76 (215)
T Consensus       443 qL~qAQKmEAiG~LAgGIAHDFNNiLt~I~G~aeLa~~~l~~~~~~~~~L~~I~~aa~Ra~~Lv~qLL~FSR~~~~~~~~  522 (831)
T PRK13837        443 RLEHARRLEAVGTLASGIAHNFNNILGAILGYAEMALNKLRRHSRARRHIDEIISSGDRARLIIDQILTFGRKGERRTKP  522 (831)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCE
T ss_conf             99999999999999989999870089999999999862069984778999999999999999999999985899997717


Q ss_pred             CCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCC---CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC-----------
Q ss_conf             00000000134444432201223321100000---0100012344456766468765320011111235-----------
Q gi|254780891|r   77 VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK---IDLSRERAKILLNLFMVAHASLPRGGKVTISVQD-----------  142 (215)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~qvl~NLi~NA~~a~~~gg~I~i~~~~-----------  142 (215)
T Consensus       523 vdl~~lv~e~~~llr~~l~~~I~l~~~~~~~~~~V~aD~~QL~QVllNL~~NA~dAM~~gG~l~I~~~~~~~~~~~~~~~  602 (831)
T PRK13837        523 FSLSELVTEIAPLLRVSLPPTVELDFDFDQEPAVVEGNPAQLQQVILNLCKNAAQAMDENGRVDIRLSRVDLRKPKVLAH  602 (831)
T ss_pred             ECHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCEEEECHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCHHHHCC
T ss_conf             74999999999999987589869999718988538887999999999999999997679986999985553363232115


Q ss_pred             ----CCCCEEEEEEECCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEEC
Q ss_conf             ----5772047999878984402458874054545789987204999999999709879999877992699999419
Q gi|254780891|r  143 ----SKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK  215 (215)
Q Consensus       143 ----~~~~~~i~V~D~G~Gi~~~e~~~~~~~~~~~~~~~g~GlGl~~~~~i~~~~gG~i~v~~~~~~g~~f~~~l~~  215 (215)
T Consensus       603 ~~~~~G~yv~L~VsDtG~GI~-~e~l~RIFEPFFTTK~~GTGLGLAvV~gIV~~hgG~I~V~S~pG~GTtF~v~LP~  678 (831)
T PRK13837        603 GTAPPGRYVLLRVSDTGRGID-EAVLPHIFEPFFTTRARGTGLGLATVHGIVSAHAGYIDVQSTVGRGTRFDVYLPP  678 (831)
T ss_pred             CCCCCCCEEEEEEEECCCCCC-HHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCEEEEEEEEC
T ss_conf             778998989999986799989-8999660489867889988746999999999869869997269997189998317