HHsearch alignment for GI: 254780891 and conserved domain: PTZ00108

>PTZ00108 DNA topoisomerase II; Provisional.
Probab=91.40  E-value=0.2  Score=28.99  Aligned_cols=76  Identities=13%  Similarity=0.141  Sum_probs=44.2

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHH--------CCCCCCCCCCCCCEEEEEEECCCCCCCH----------HH-HHHHHCC-C
Q ss_conf             0012344456766468765320--------0111112355772047999878984402----------45-8874054-5
Q gi|254780891|r  112 SRERAKILLNLFMVAHASLPRG--------GKVTISVQDSKNENIFSLKINGNLARFP----------EK-FTQIVDG-N  171 (215)
Q Consensus       112 ~~~~~qvl~NLi~NA~~a~~~g--------g~I~i~~~~~~~~~~i~V~D~G~Gi~~~----------e~-~~~~~~~-~  171 (215)
T Consensus        56 vPGLyKIFDEILVNAaDNk~Rd~~~~~~pmt~IKVtID~--eng~ISV~NNGRGIPVeiH~kekvyvPELIFGhLlTGsN  133 (1506)
T PTZ00108         56 VPGLYKIFDEIIVNAADVKAREKEKSENPMTCIKIEINK--DNKKISVYNDGEGIPVDIHKEMNIYVPHMIFGELLTSDN  133 (1506)
T ss_pred             CCHHHHHHHHHHCCCHHHHHCCCCCCCCCCCEEEEEEEC--CCCEEEEEECCCCCCCCCCCCCCCCHHHHHHCCCCCCCC
T ss_conf             653475444564151444320754356876659999967--899799997999524368776797472686520767678


Q ss_pred             CCC-----CCCCCCHHHHHHHHH
Q ss_conf             457-----899872049999999
Q gi|254780891|r  172 VES-----TIDSHDIQFYYVILL  189 (215)
Q Consensus       172 ~~~-----~~~g~GlGl~~~~~i  189 (215)
T Consensus       134 FDDdeyKVSGGrNGvGAKLvNIF  156 (1506)
T PTZ00108        134 YDDAEDRITGGRNGFGAKLTNIF  156 (1506)
T ss_pred             CCCCCCEECCCCCCCCEEEEEEC
T ss_conf             78995634488887245787862