HHsearch alignment for GI: 254780891 and conserved domain: PTZ00108
>PTZ00108 DNA topoisomerase II; Provisional.
Probab=91.40 E-value=0.2 Score=28.99 Aligned_cols=76 Identities=13% Similarity=0.141 Sum_probs=44.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHH--------CCCCCCCCCCCCCEEEEEEECCCCCCCH----------HH-HHHHHCC-C
Q ss_conf 0012344456766468765320--------0111112355772047999878984402----------45-8874054-5
Q gi|254780891|r 112 SRERAKILLNLFMVAHASLPRG--------GKVTISVQDSKNENIFSLKINGNLARFP----------EK-FTQIVDG-N 171 (215)
Q Consensus 112 ~~~~~qvl~NLi~NA~~a~~~g--------g~I~i~~~~~~~~~~i~V~D~G~Gi~~~----------e~-~~~~~~~-~ 171 (215)
T Consensus 56 vPGLyKIFDEILVNAaDNk~Rd~~~~~~pmt~IKVtID~--eng~ISV~NNGRGIPVeiH~kekvyvPELIFGhLlTGsN 133 (1506)
T PTZ00108 56 VPGLYKIFDEIIVNAADVKAREKEKSENPMTCIKIEINK--DNKKISVYNDGEGIPVDIHKEMNIYVPHMIFGELLTSDN 133 (1506)
T ss_pred CCHHHHHHHHHHCCCHHHHHCCCCCCCCCCCEEEEEEEC--CCCEEEEEECCCCCCCCCCCCCCCCHHHHHHCCCCCCCC
T ss_conf 653475444564151444320754356876659999967--899799997999524368776797472686520767678
Q ss_pred CCC-----CCCCCCHHHHHHHHH
Q ss_conf 457-----899872049999999
Q gi|254780891|r 172 VES-----TIDSHDIQFYYVILL 189 (215)
Q Consensus 172 ~~~-----~~~g~GlGl~~~~~i 189 (215)
T Consensus 134 FDDdeyKVSGGrNGvGAKLvNIF 156 (1506)
T PTZ00108 134 YDDAEDRITGGRNGFGAKLTNIF 156 (1506)
T ss_pred CCCCCCEECCCCCCCCEEEEEEC
T ss_conf 78995634488887245787862