HHsearch alignment for GI: 254780891 and conserved domain: TIGR00585
>TIGR00585 mutl DNA mismatch repair protein MutL; InterPro: IPR014763 This entry represents DNA mismatch repair proteins, such as MutL. The dimeric MutL protein has a key function in communicating mismatch recognition by MutS to downstream repair processes. Mismatch repair contributes to the overall fidelity of DNA replication by targeting mispaired bases that arise through replication errors during homologous recombination and as a result of DNA damage. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex ..
Probab=97.29 E-value=0.00035 Score=46.48 Aligned_cols=61 Identities=15% Similarity=0.209 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHCCCCCCCCCC
Q ss_conf 12344456766468765320011111235577204799987898440245887405454578998
Q gi|254780891|r 114 ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDS 178 (215)
Q Consensus 114 ~~~qvl~NLi~NA~~a~~~gg~I~i~~~~~~~~~~i~V~D~G~Gi~~~e~~~~~~~~~~~~~~~g 178 (215)
T Consensus 22 ~p~~vVKELvENSLDAGA--t~I~v~~~~-gG~~~I~V~DNG~Gi~-~~d~~~~~~~haTSKI~~ 82 (367)
T TIGR00585 22 RPASVVKELVENSLDAGA--TKIEVEIEE-GGLKLIEVSDNGSGID-KEDLELACERHATSKIQS 82 (367)
T ss_pred HHHHHHHHHHHHHHCCCC--CEEEEEEEE-CCEEEEEEEECCCCCC-HHHHHHHHCCCCCCCCCC
T ss_conf 279999998873121488--589999962-6535899997785677-777998612357763224