HHsearch alignment for GI: 254780891 and conserved domain: TIGR01925

>TIGR01925 spIIAB anti-sigma F factor; InterPro: IPR010194 This entry describes the SpoIIAB anti-sigma F factor. Sigma F regulates spore development in B subtilis. SpoIIAB binds to sigma F, preventing formation of the transcription complex at the promoter . SpoIIAA (anti-anti-sigma F factor) binds to SpoIIAB to inhibit association with sigma F, however SpoIIAB can phosphorylate SpoIIAA, causing disassociation of the SpoIIAA/B complex . The SpoIIE phosphatase dephosphorylates SpoIIAA.; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0016989 sigma factor antagonist activity, 0006468 protein amino acid phosphorylation, 0030435 sporulation, 0045892 negative regulation of transcription DNA-dependent.
Probab=97.30  E-value=0.00033  Score=46.59  Aligned_cols=90  Identities=10%  Similarity=0.008  Sum_probs=69.8

Q ss_pred             HHHHHHHHHHHHHHHH---HHCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHCCCCCCCC--CCCCHHHHHHHHHH
Q ss_conf             3444567664687653---200111112355772047999878984402458874054545789--98720499999999
Q gi|254780891|r  116 AKILLNLFMVAHASLP---RGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLA  190 (215)
Q Consensus       116 ~qvl~NLi~NA~~a~~---~gg~I~i~~~~~~~~~~i~V~D~G~Gi~~~e~~~~~~~~~~~~~~--~g~GlGl~~~~~i~  190 (215)
T Consensus        41 K~~VSEAVTNAIIHGYE~~~~~~V~I~~~~~d~~~~~~v~D~G~GI~---~lE~A~~PLyTskPeLERSGMGF----TvM  113 (137)
T TIGR01925        41 KTAVSEAVTNAIIHGYEENKEGVVIISATIEDDEVSITVRDEGIGIE---NLEEAREPLYTSKPELERSGMGF----TVM  113 (137)
T ss_pred             HHHHHHHHHCCEEECEEECCCCEEEEEEEEECCEEEEEEEECCCCHH---HHHHHCCCCCCCCCCCCCCCCCE----EEE
T ss_conf             43332232120531456379977899999605489999864675723---37853266457998722067860----121


Q ss_pred             HHCCCEEEEEEECCCCEEEEEE
Q ss_conf             9709879999877992699999
Q gi|254780891|r  191 HENKIRLLPEIIDDHNVVLSAL  212 (215)
Q Consensus       191 ~~~gG~i~v~~~~~~g~~f~~~  212 (215)
T Consensus       114 E~FMD~~~v~S~~~~GT~I~~~  135 (137)
T TIGR01925       114 ESFMDDVEVDSEKEKGTKIILK  135 (137)
T ss_pred             CCCCCCEEEEECCCCCCEEEEE
T ss_conf             1124512686238998468875