HHsearch alignment for GI: 254780891 and conserved domain: TIGR02956

>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS; InterPro: IPR014302 This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (IPR003594 from INTERPRO), HAMP (IPR003660 from INTERPRO), phosphoacceptor (IPR003661 from INTERPRO), and phosphotransfer (IPR008207 from INTERPRO) domains and a response regulator receiver domain (IPR001789 from INTERPRO)..
Probab=100.00  E-value=5.1e-36  Score=248.70  Aligned_cols=210  Identities=17%  Similarity=0.170  Sum_probs=153.8

Q ss_pred             HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHH----HHHHHHHHCCC
Q ss_conf             15999996768799----999774545422799999999999614430---14789888999999----99863110011
Q gi|254780891|r    3 KNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIE---DEVMQLIRLSSMSA----IIRLKFMRLAF   71 (215)
Q Consensus         3 ~~~~~~~~~~~laa----llas~IaHdlrtPL~~I~~~~elL~~~~~~---~~~~~~i~~~~~~~----~~l~~~~r~~~   71 (215)
T Consensus       489 ~~H~kAR~~AE~AnrAKS~FLAtMSHEIRTPlNG~LGT~~LL~d~~L~~~Q~~yl~~In~SGe~LL~iLNDILDYSkIEa  568 (1052)
T TIGR02956       489 LNHAKARAEAEEANRAKSAFLATMSHEIRTPLNGILGTLELLGDTGLTSQQQQYLQVINRSGESLLDILNDILDYSKIEA  568 (1052)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             87999999999974887688741351132011368999975058998888999999998622789999846754677610


Q ss_pred             C--CCCCCCCCCCCCHHHHHHHHHHHC---CCCCCCCCC----CCCC--CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf             2--232000000000134444432201---223321100----0000--1000123444567664687653200111112
Q gi|254780891|r   72 G--YTGSVDSLIGLGDIEQVIEDFIAV---DKRVQVSWT----GEKI--DLSRERAKILLNLFMVAHASLPRGGKVTISV  140 (215)
Q Consensus        72 ~--~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~----~~~~--~~~~~~~qvl~NLi~NA~~a~~~gg~I~i~~  140 (215)
T Consensus       569 GGthl~i~~~~fd~~~L~~dv~~Lm~sRA~~Kg~~L~~~~~~~~~~~~~gD~~riRQvL~NLvgNaIKFT~~G-sv~l~~  647 (1052)
T TIGR02956       569 GGTHLSISPRPFDLNKLLEDVHHLMESRAQEKGIQLILNIDEQLPNWWQGDLRRIRQVLINLVGNAIKFTDRG-SVVLRV  647 (1052)
T ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHCCCCHHHHHHHHHHHCCCEECCCC-EEEEEE
T ss_conf             8746534556778888999999999987740372567427654278875366134476765441320043452-699998


Q ss_pred             CCCCCC------EEEEEEECCCCCCCHHHHHHHHCCCCC-----CCCCCCCHHHHHHHHHHHHCCCE---EEEEEECCCC
Q ss_conf             355772------047999878984402458874054545-----78998720499999999970987---9999877992
Q gi|254780891|r  141 QDSKNE------NIFSLKINGNLARFPEKFTQIVDGNVE-----STIDSHDIQFYYVILLAHENKIR---LLPEIIDDHN  206 (215)
Q Consensus       141 ~~~~~~------~~i~V~D~G~Gi~~~e~~~~~~~~~~~-----~~~~g~GlGl~~~~~i~~~~gG~---i~v~~~~~~g  206 (215)
T Consensus       648 ~l~~~~~~gdsel~F~V~DtG~GIa-e~~~~~lF~aF~Qa~eg~~~~gGTGLGLAIs~~Lv~AM~G~GrGl~v~S~~~~G  726 (1052)
T TIGR02956       648 SLNDDSSSGDSELLFEVEDTGVGIA-EEEQATLFDAFTQADEGRRKSGGTGLGLAISRRLVEAMDGEGRGLGVESELGQG  726 (1052)
T ss_pred             EECCCCCCCCCEEEEEEEECCCCCC-HHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCC
T ss_conf             8558889866347888862477998-799985433101210137313776506899999999708887650166645875


Q ss_pred             EEEEEEEE
Q ss_conf             69999941
Q gi|254780891|r  207 VVLSALLE  214 (215)
Q Consensus       207 ~~f~~~l~  214 (215)
T Consensus       727 ScF~F~lp  734 (1052)
T TIGR02956       727 SCFWFTLP  734 (1052)
T ss_pred             CEEEEECC
T ss_conf             02212423