Query gi|254780891|ref|YP_003065304.1| hypothetical protein CLIBASIA_03940 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 215
No_of_seqs 191 out of 11591
Neff 9.3
Searched_HMMs 39220
Date Tue May 31 16:59:39 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780891.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10364 sensor protein ZraS; 100.0 1.8E-42 0 289.6 19.8 208 6-214 227-448 (455)
2 PRK11360 sensory histidine kin 100.0 4.5E-42 0 287.1 19.7 208 6-214 377-598 (607)
3 PRK13837 two-component VirA-li 100.0 2E-41 0 283.0 19.0 208 7-215 443-678 (831)
4 TIGR02966 phoR_proteo phosphat 100.0 3.2E-42 0 288.0 13.2 195 18-213 121-339 (339)
5 PRK09303 adaptive-response sen 100.0 1.9E-40 4.2E-45 276.9 18.6 212 2-214 136-374 (378)
6 PRK11006 phoR phosphate regulo 100.0 1.4E-39 3.5E-44 271.3 18.4 198 17-215 206-423 (431)
7 PRK10490 sensor protein KdpD; 100.0 7E-39 1.8E-43 266.9 18.0 211 4-215 653-882 (895)
8 PRK11100 sensory histidine kin 100.0 1.5E-38 3.9E-43 264.7 18.8 198 17-215 258-473 (475)
9 PRK13557 histidine kinase; Pro 100.0 2.7E-38 7E-43 263.1 19.2 209 6-215 150-392 (538)
10 PRK10549 signal transduction h 100.0 4.2E-38 1.1E-42 261.9 18.3 197 17-214 243-458 (467)
11 PRK10841 hybrid sensory kinase 100.0 1.4E-37 3.7E-42 258.5 17.6 196 17-214 472-689 (947)
12 PRK09835 sensor kinase CusS; P 100.0 6.3E-37 1.6E-41 254.4 19.2 197 17-215 264-480 (482)
13 PRK11466 hybrid sensory histid 100.0 8.7E-37 2.2E-41 253.6 19.0 197 16-214 445-661 (912)
14 PRK11073 glnL nitrogen regulat 100.0 4.4E-36 1.1E-40 249.1 19.1 197 16-214 131-346 (348)
15 PRK10604 sensor protein RstB; 100.0 4.7E-36 1.2E-40 248.9 18.1 196 17-215 214-423 (433)
16 PRK11107 hybrid sensory histid 100.0 6.1E-36 1.6E-40 248.2 18.1 197 16-214 294-517 (920)
17 PRK10755 sensor protein BasS/P 100.0 7.2E-36 1.8E-40 247.7 18.4 197 17-215 145-355 (355)
18 PRK09470 cpxA two-component se 100.0 1.2E-35 3E-40 246.3 18.5 193 18-214 246-456 (461)
19 PRK11091 aerobic respiration c 100.0 2.4E-35 6.1E-40 244.4 19.4 197 16-214 284-504 (779)
20 PRK09467 envZ osmolarity senso 100.0 1.3E-35 3.2E-40 246.2 17.4 192 17-214 233-434 (437)
21 COG2205 KdpD Osmosensitive K+ 100.0 1.4E-35 3.7E-40 245.8 17.5 208 7-215 652-879 (890)
22 TIGR02956 TMAO_torS TMAO reduc 100.0 5.1E-36 1.3E-40 248.7 15.2 210 3-214 489-734 (1052)
23 PRK09959 hybrid sensory histid 100.0 5.3E-35 1.4E-39 242.2 17.9 197 17-214 714-935 (1197)
24 PRK10337 sensor protein QseC; 100.0 5.9E-34 1.5E-38 235.6 18.7 192 17-213 236-446 (446)
25 PRK10815 sensor protein PhoQ; 100.0 7.5E-34 1.9E-38 234.9 18.8 195 18-215 269-477 (484)
26 COG4191 Signal transduction hi 100.0 1E-33 2.6E-38 234.1 18.0 214 1-215 368-601 (603)
27 TIGR02916 PEP_his_kin putative 100.0 6.3E-34 1.6E-38 235.4 16.1 205 9-214 478-696 (696)
28 TIGR01386 cztS_silS_copS heavy 100.0 1E-33 2.6E-38 234.1 13.6 197 17-214 263-483 (483)
29 COG5002 VicK Signal transducti 100.0 1E-33 2.6E-38 234.1 13.4 197 17-214 227-447 (459)
30 PRK11086 sensory histidine kin 100.0 1.3E-32 3.4E-37 226.9 18.3 192 9-215 332-534 (541)
31 COG3852 NtrB Signal transducti 100.0 9.8E-30 2.5E-34 208.8 16.7 196 17-214 134-353 (363)
32 COG5000 NtrY Signal transducti 100.0 2.8E-29 7.2E-34 205.9 15.0 204 8-215 477-708 (712)
33 COG4251 Bacteriophytochrome (l 100.0 1.2E-27 3E-32 195.6 15.9 205 7-214 517-740 (750)
34 COG5385 Uncharacterized protei 99.9 2.1E-25 5.3E-30 181.3 13.9 212 1-214 1-213 (214)
35 COG0642 BaeS Signal transducti 99.9 2.9E-24 7.5E-29 174.0 16.9 199 15-215 115-329 (336)
36 COG3290 CitA Signal transducti 99.9 1.4E-22 3.5E-27 163.4 17.5 197 8-215 326-531 (537)
37 TIGR02938 nifL_nitrog nitrogen 99.9 3.6E-21 9.1E-26 154.4 14.9 207 5-214 264-495 (496)
38 smart00387 HATPase_c Histidine 99.9 6.2E-22 1.6E-26 159.2 10.5 104 111-215 2-110 (111)
39 pfam02518 HATPase_c Histidine 99.9 9.7E-22 2.5E-26 158.0 10.6 104 111-215 2-110 (111)
40 cd00075 HATPase_c Histidine ki 99.8 1.5E-20 3.9E-25 150.4 10.2 98 115-213 1-103 (103)
41 pfam10090 DUF2328 Uncharacteri 99.8 1.4E-19 3.6E-24 144.3 12.6 177 30-210 1-180 (181)
42 COG4192 Signal transduction hi 99.8 1.5E-18 3.8E-23 137.8 14.4 211 2-213 436-664 (673)
43 PRK13560 hypothetical protein; 99.7 6.5E-16 1.7E-20 121.0 17.6 185 17-214 607-802 (807)
44 PRK10547 chemotaxis protein Ch 99.7 7E-17 1.8E-21 127.1 12.1 129 86-214 344-514 (662)
45 COG0643 CheA Chemotaxis protei 99.7 9.3E-16 2.4E-20 120.0 14.2 142 73-214 386-572 (716)
46 PRK10935 nitrate/nitrite senso 99.7 4.7E-15 1.2E-19 115.5 15.5 176 20-215 366-562 (568)
47 PRK10618 phosphotransfer inter 99.5 3E-12 7.6E-17 97.7 17.3 195 17-214 452-667 (881)
48 PRK10600 nitrate/nitrite senso 99.5 5E-12 1.3E-16 96.3 18.1 178 18-215 365-556 (569)
49 COG2972 Predicted signal trans 99.5 3.4E-12 8.6E-17 97.4 15.9 188 9-215 253-452 (456)
50 COG4585 Signal transduction hi 99.4 5.1E-11 1.3E-15 89.9 14.9 89 112-215 277-365 (365)
51 PRK11644 sensory histidine kin 99.3 3.5E-10 9E-15 84.6 16.1 172 22-215 311-496 (497)
52 COG3850 NarQ Signal transducti 99.3 9.2E-10 2.3E-14 81.9 17.7 181 20-214 374-567 (574)
53 COG3920 Signal transduction hi 99.1 2.1E-08 5.5E-13 73.2 18.2 183 17-215 21-215 (221)
54 PRK03660 anti-sigma F factor; 99.1 4.5E-10 1.1E-14 83.9 9.1 92 115-213 40-136 (146)
55 COG3851 UhpB Signal transducti 98.9 2.1E-07 5.3E-12 67.0 15.7 180 18-215 306-494 (497)
56 COG4564 Signal transduction hi 98.9 9.2E-08 2.3E-12 69.2 12.8 105 98-215 339-447 (459)
57 COG3275 LytS Putative regulato 98.9 1.9E-07 4.9E-12 67.1 14.0 182 18-214 335-550 (557)
58 PRK13559 hypothetical protein; 98.8 8.2E-07 2.1E-11 63.1 16.3 177 16-214 173-360 (363)
59 KOG0787 consensus 98.6 3.7E-07 9.3E-12 65.4 8.7 108 106-214 251-379 (414)
60 PRK04069 serine-protein kinase 98.3 3.5E-06 9E-11 59.1 8.0 88 118-212 46-140 (158)
61 pfam00512 HisKA His Kinase A ( 98.2 2.8E-06 7.1E-11 59.8 5.5 49 17-65 4-55 (66)
62 COG1389 DNA topoisomerase VI, 98.2 1.6E-05 4.2E-10 54.9 9.1 102 112-213 34-148 (538)
63 TIGR01052 top6b DNA topoisomer 98.1 4.9E-06 1.2E-10 58.2 5.8 92 113-204 27-137 (662)
64 cd00082 HisKA Histidine Kinase 98.1 4.7E-06 1.2E-10 58.3 5.3 51 17-67 6-60 (65)
65 PRK04184 DNA topoisomerase VI 98.1 3.7E-05 9.5E-10 52.6 8.8 96 112-207 33-140 (533)
66 smart00388 HisKA His Kinase A 98.0 1.3E-05 3.2E-10 55.6 5.8 49 17-65 4-55 (66)
67 COG2172 RsbW Anti-sigma regula 98.0 4.9E-05 1.2E-09 51.9 8.3 90 117-213 43-139 (146)
68 KOG0519 consensus 97.6 3.5E-06 9E-11 59.1 -2.2 193 18-214 224-487 (786)
69 TIGR01925 spIIAB anti-sigma F 97.3 0.00033 8.5E-09 46.6 4.3 90 116-212 41-135 (137)
70 TIGR00585 mutl DNA mismatch re 97.3 0.00035 8.8E-09 46.5 4.4 61 114-178 22-82 (367)
71 COG0326 HtpG Molecular chapero 97.1 0.00089 2.3E-08 43.9 5.0 97 118-214 31-179 (623)
72 PRK00095 mutL DNA mismatch rep 97.1 0.00087 2.2E-08 43.9 4.6 60 113-176 21-80 (612)
73 PTZ00272 heat shock protein 83 97.0 0.0018 4.6E-08 41.9 5.9 96 119-214 30-176 (701)
74 PTZ00130 heat shock protein 90 96.8 0.006 1.5E-07 38.6 7.1 96 119-214 101-249 (824)
75 PRK05218 heat shock protein 90 96.7 0.00069 1.8E-08 44.6 1.6 72 119-191 30-133 (612)
76 TIGR01924 rsbW_low_gc anti-sig 96.5 0.0031 7.8E-08 40.5 3.9 91 115-212 44-142 (161)
77 COG0323 MutL DNA mismatch repa 96.5 0.0032 8.1E-08 40.4 4.0 59 115-177 24-82 (638)
78 TIGR01058 parE_Gpos DNA topois 94.6 0.12 3E-06 30.4 5.9 86 112-204 38-142 (655)
79 PRK05644 gyrB DNA gyrase subun 92.3 0.22 5.7E-06 28.7 4.2 91 114-212 40-149 (725)
80 KOG1978 consensus 91.7 0.15 3.8E-06 29.8 2.8 53 114-170 20-72 (672)
81 COG5381 Uncharacterized protei 91.7 0.24 6E-06 28.5 3.8 87 115-206 64-167 (184)
82 PTZ00108 DNA topoisomerase II; 91.4 0.2 5E-06 29.0 3.1 76 112-189 56-156 (1506)
83 PTZ00109 DNA gyrase subunit b; 89.3 0.25 6.4E-06 28.3 2.2 46 112-160 83-130 (941)
84 TIGR01059 gyrB DNA gyrase, B s 88.7 0.23 5.8E-06 28.6 1.6 43 115-160 32-76 (818)
85 PRK05559 DNA topoisomerase IV 87.0 0.23 5.9E-06 28.6 0.8 44 114-160 37-82 (633)
86 KOG0019 consensus 86.1 2.6 6.5E-05 21.9 5.8 75 118-192 61-163 (656)
87 COG0187 GyrB Type IIA topoisom 84.5 0.46 1.2E-05 26.6 1.3 44 114-160 36-81 (635)
88 KOG0020 consensus 84.0 0.87 2.2E-05 24.9 2.6 75 118-192 99-207 (785)
89 KOG1979 consensus 83.3 1 2.6E-05 24.4 2.7 13 23-35 271-283 (694)
90 TIGR01055 parE_Gneg DNA topois 81.3 1.5 3.8E-05 23.4 2.9 74 115-191 34-127 (647)
91 KOG0355 consensus 69.9 5.7 0.00015 19.7 3.4 47 112-159 51-98 (842)
92 TIGR00169 leuB 3-isopropylmala 66.1 10 0.00026 18.1 4.3 40 24-63 301-340 (370)
93 TIGR01967 DEAH_box_HrpA ATP-de 57.7 2.1 5.5E-05 22.4 -0.7 26 13-38 123-149 (1320)
94 pfam07568 HisKA_2 Histidine ki 50.2 19 0.00048 16.4 5.6 50 22-71 2-51 (76)
95 TIGR01704 MTA/SAH-Nsdase MTA/S 44.1 7.8 0.0002 18.8 0.4 44 19-63 178-221 (229)
96 TIGR02153 gatD_arch glutamyl-t 43.6 14 0.00037 17.1 1.7 52 127-182 267-320 (413)
97 KOG3689 consensus 42.4 20 0.00052 16.2 2.4 36 5-40 452-500 (707)
98 COG2865 Predicted transcriptio 38.3 29 0.00074 15.2 5.6 89 116-213 272-378 (467)
99 pfam07492 Trehalase_Ca-bi Neut 38.1 20 0.00051 16.2 1.8 18 141-158 8-25 (30)
100 PRK08383 putative monovalent c 36.0 31 0.0008 15.0 3.1 60 109-170 97-157 (167)
101 TIGR00519 asnASE_I L-asparagin 35.2 28 0.00072 15.3 2.1 56 123-182 198-255 (347)
102 TIGR00021 rpiA ribose 5-phosph 28.0 35 0.0009 14.7 1.7 62 103-171 133-202 (236)
103 pfam00233 PDEase_I 3'5'-cyclic 27.4 27 0.00068 15.4 1.0 23 7-29 25-47 (237)
104 COG0813 DeoD Purine-nucleoside 27.3 44 0.0011 14.1 2.7 41 116-158 27-67 (236)
105 PRK07831 short chain dehydroge 27.1 41 0.0011 14.2 1.9 18 180-197 236-253 (261)
106 pfam03281 Mab-21 Mab-21 protei 27.1 44 0.0011 14.0 3.0 30 107-136 120-149 (360)
107 KOG4013 consensus 22.4 54 0.0014 13.5 2.2 26 180-207 164-189 (255)
108 TIGR01373 soxB sarcosine oxida 22.2 54 0.0014 13.5 2.2 23 18-40 97-120 (407)
109 KOG3938 consensus 21.9 55 0.0014 13.4 2.0 30 129-158 121-150 (334)
110 PRK04940 hypothetical protein; 21.9 55 0.0014 13.4 1.9 10 149-158 128-137 (179)
111 TIGR01083 nth endonuclease III 21.1 52 0.0013 13.6 1.4 55 120-177 120-174 (192)
112 COG2388 Predicted acetyltransf 20.8 58 0.0015 13.3 1.8 58 135-192 4-67 (99)
No 1
>PRK10364 sensor protein ZraS; Provisional
Probab=100.00 E-value=1.8e-42 Score=289.59 Aligned_cols=208 Identities=13% Similarity=0.138 Sum_probs=159.2
Q ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHCCC----CHHHHHHHHHHHHHHHHHHH----HHHCCCCCCC
Q ss_conf 999967687999--9977454542279999999999961443----01478988899999999863----1100112232
Q gi|254780891|r 6 CFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGI----EDEVMQLIRLSSMSAIIRLK----FMRLAFGYTG 75 (215)
Q Consensus 6 ~~~~~~~~laal--las~IaHdlrtPL~~I~~~~elL~~~~~----~~~~~~~i~~~~~~~~~l~~----~~r~~~~~~~ 75 (215)
+.-..+.|||++ |||+|||||||||++|.+++++|.+... ..++.+.|.+.+.+++++++ |.|.......
T Consensus 227 ~el~r~EKLAaLG~LAAgVAHEIRNPLtsI~G~AqlL~~~~~~~~e~~e~~~iI~~E~~RL~~iI~~LL~faRp~~~~~~ 306 (455)
T PRK10364 227 DEMKRKEKLVALGHLAAGVAHEIRNPLSSIKGLAKYFAERAPAGGEAHQLAQVMAKEADRLNRVVSELLELVKPTHLALQ 306 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 99999989999999999989988564999999999986769998579999999999999999999999987289989884
Q ss_pred CCCCCCCCCHHHHHHHHHHH-CCCCCCCCCCCC---CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEE
Q ss_conf 00000000013444443220-122332110000---00100012344456766468765320011111235577204799
Q gi|254780891|r 76 SVDSLIGLGDIEQVIEDFIA-VDKRVQVSWTGE---KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSL 151 (215)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---~~~~~~~~~qvl~NLi~NA~~a~~~gg~I~i~~~~~~~~~~i~V 151 (215)
..+....+.++..++..... +...+.+..+.. ..+++..+.|++.||+.||++|++.+|+|+|++...++.+.|+|
T Consensus 307 ~vdL~~li~~~l~l~~~~a~~k~I~l~~~~~~~lp~I~~D~~~L~QVl~NLl~NAi~A~~~gg~I~I~~~~~~~~V~I~V 386 (455)
T PRK10364 307 AVDLNTLINHSLQLVSQDANSREIQLRFTANDTLPEIQADPDRLTQVLLNLYLNAIQAIGQHGVISVTASESGAGVKISV 386 (455)
T ss_pred EECHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCEEEECHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCEEEEEE
T ss_conf 88499999999999986886489099997388887598889999999999999999975899779999998599899999
Q ss_pred EECCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEE
Q ss_conf 987898440245887405454578998720499999999970987999987799269999941
Q gi|254780891|r 152 KINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 (215)
Q Consensus 152 ~D~G~Gi~~~e~~~~~~~~~~~~~~~g~GlGl~~~~~i~~~~gG~i~v~~~~~~g~~f~~~l~ 214 (215)
+|+|+||+ ++..+++|+||++++.+|+||||++|+.|++.|||+|.++|.+|+||+|++.||
T Consensus 387 ~DnG~GIp-~E~l~rIFePFfTTK~~GTGLGLaIv~~IVe~HgG~I~v~S~~G~GT~FtI~LP 448 (455)
T PRK10364 387 TDSGKGIA-ADQLEAIFTPYFTTKAEGTGLGLAVVHNIVEQHGGTIQVASQEGKGATFTLWLP 448 (455)
T ss_pred EECCCCCC-HHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCEEEEEEEE
T ss_conf 97699979-789878658976489897028899999999988997999955999879999982
No 2
>PRK11360 sensory histidine kinase AtoS; Provisional
Probab=100.00 E-value=4.5e-42 Score=287.11 Aligned_cols=208 Identities=14% Similarity=0.137 Sum_probs=156.3
Q ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHHHHHHH----HHHCCCCCCCC
Q ss_conf 999967687999--997745454227999999999996144301---478988899999999863----11001122320
Q gi|254780891|r 6 CFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIED---EVMQLIRLSSMSAIIRLK----FMRLAFGYTGS 76 (215)
Q Consensus 6 ~~~~~~~~laal--las~IaHdlrtPL~~I~~~~elL~~~~~~~---~~~~~i~~~~~~~~~l~~----~~r~~~~~~~~ 76 (215)
....++.+||++ ++|+|||||||||++|.+++|+|.+...++ ++++.|.+.+.++.++++ |.|........
T Consensus 377 ~~l~~~erlaalGe~~A~vaHElRnPLt~I~g~~elL~~~~~~~~~~~~l~~i~~e~~Rl~~li~~lL~~sr~~~~~~~~ 456 (607)
T PRK11360 377 RRMARAERLAALGELMAGVAHEIRNPLTAIRGYVQILRQQTSDPIHQEYLSVVLREVDSLNKVIQQLLEFSRPRHSQWQQ 456 (607)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCE
T ss_conf 99999999999999999989987154999999999986689987999999999999999999999999852778888847
Q ss_pred CCCCCCCCHHHHHHHHHH-HCCCCCCCCCCCC---CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-CCCEEEEE
Q ss_conf 000000001344444322-0122332110000---001000123444567664687653200111112355-77204799
Q gi|254780891|r 77 VDSLIGLGDIEQVIEDFI-AVDKRVQVSWTGE---KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDS-KNENIFSL 151 (215)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~qvl~NLi~NA~~a~~~gg~I~i~~~~~-~~~~~i~V 151 (215)
.+....+.++...+.... .....+.++.+.. ...++.++.|++.||+.||++|+|.+|+|+|.+... ++.+.|+|
T Consensus 457 v~l~~l~~~~~~~~~~~~~~~~i~l~~~~~~~~~~v~~D~~~l~qvl~NLi~NAi~a~~~~g~I~i~~~~~~~~~v~i~V 536 (607)
T PRK11360 457 VSLNALVEEVLVLVQTAGVQARVDFITELDNELPPINADRELLKQVLLNILINAVQAISARGKIRIRTWQYSDSQQAISI 536 (607)
T ss_pred ECHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCEEEECHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCEEEEEE
T ss_conf 86999999999999998886796899981898876998889999999999999628628996799999993698799999
Q ss_pred EECCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEE
Q ss_conf 987898440245887405454578998720499999999970987999987799269999941
Q gi|254780891|r 152 KINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 (215)
Q Consensus 152 ~D~G~Gi~~~e~~~~~~~~~~~~~~~g~GlGl~~~~~i~~~~gG~i~v~~~~~~g~~f~~~l~ 214 (215)
+|+|+||+ |+..+++|+||++++..|+||||++|+.|++.|||+|+++|.+|+||+|+++||
T Consensus 537 ~D~G~GI~-~e~~~~IFepF~ttk~~GtGLGLaI~k~Ive~hgG~I~v~S~~g~GT~F~i~LP 598 (607)
T PRK11360 537 EDNGCGID-LELLKKIFDPFFTTKASGTGLGLALSQRIINAHQGDIRVASLPGYGTTFTLILP 598 (607)
T ss_pred EECCCCCC-HHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCEEEEEEEE
T ss_conf 98676869-899964558975489998133799999999988998999966999869999980
No 3
>PRK13837 two-component VirA-like sensor kinase; Provisional
Probab=100.00 E-value=2e-41 Score=282.97 Aligned_cols=208 Identities=14% Similarity=0.084 Sum_probs=167.1
Q ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHCC----CCHHHHHHHHHHHHHHHHH----HHHHHCCCCCCCC
Q ss_conf 99967687999--997745454227999999999996144----3014789888999999998----6311001122320
Q gi|254780891|r 7 FNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVG----IEDEVMQLIRLSSMSAIIR----LKFMRLAFGYTGS 76 (215)
Q Consensus 7 ~~~~~~~laal--las~IaHdlrtPL~~I~~~~elL~~~~----~~~~~~~~i~~~~~~~~~l----~~~~r~~~~~~~~ 76 (215)
...++.||.++ |+++|||||||||++|.||+|++.... ...+.++.|.+.+.++..+ +.|.|........
T Consensus 443 qL~qAQKmEAiG~LAgGIAHDFNNiLt~I~G~aeLa~~~l~~~~~~~~~L~~I~~aa~Ra~~Lv~qLL~FSR~~~~~~~~ 522 (831)
T PRK13837 443 RLEHARRLEAVGTLASGIAHNFNNILGAILGYAEMALNKLRRHSRARRHIDEIISSGDRARLIIDQILTFGRKGERRTKP 522 (831)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCE
T ss_conf 99999999999999989999870089999999999862069984778999999999999999999999985899997717
Q ss_pred CCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCC---CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC-----------
Q ss_conf 00000000134444432201223321100000---0100012344456766468765320011111235-----------
Q gi|254780891|r 77 VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK---IDLSRERAKILLNLFMVAHASLPRGGKVTISVQD----------- 142 (215)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~qvl~NLi~NA~~a~~~gg~I~i~~~~----------- 142 (215)
.+....+.++..++...+...+.+.++...+. ..++.++.|++.||+.||.+||+.||.|+|++..
T Consensus 523 vdl~~lv~e~~~llr~~l~~~I~l~~~~~~~~~~V~aD~~QL~QVllNL~~NA~dAM~~gG~l~I~~~~~~~~~~~~~~~ 602 (831)
T PRK13837 523 FSLSELVTEIAPLLRVSLPPTVELDFDFDQEPAVVEGNPAQLQQVILNLCKNAAQAMDENGRVDIRLSRVDLRKPKVLAH 602 (831)
T ss_pred ECHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCEEEECHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCHHHHCC
T ss_conf 74999999999999987589869999718988538887999999999999999997679986999985553363232115
Q ss_pred ----CCCCEEEEEEECCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEEC
Q ss_conf ----5772047999878984402458874054545789987204999999999709879999877992699999419
Q gi|254780891|r 143 ----SKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 (215)
Q Consensus 143 ----~~~~~~i~V~D~G~Gi~~~e~~~~~~~~~~~~~~~g~GlGl~~~~~i~~~~gG~i~v~~~~~~g~~f~~~l~~ 215 (215)
.++++.|+|+|+|+||+ ++..+|+|+|||+||.+|+||||++|+.|+++|||.|.|+|.+|.||+|++.||.
T Consensus 603 ~~~~~G~yv~L~VsDtG~GI~-~e~l~RIFEPFFTTK~~GTGLGLAvV~gIV~~hgG~I~V~S~pG~GTtF~v~LP~ 678 (831)
T PRK13837 603 GTAPPGRYVLLRVSDTGRGID-EAVLPHIFEPFFTTRARGTGLGLATVHGIVSAHAGYIDVQSTVGRGTRFDVYLPP 678 (831)
T ss_pred CCCCCCCEEEEEEEECCCCCC-HHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCEEEEEEEEC
T ss_conf 778998989999986799989-8999660489867889988746999999999869869997269997189998317
No 4
>TIGR02966 phoR_proteo phosphate regulon sensor kinase PhoR; InterPro: IPR014310 Members of this protein are the regulatory histidine kinase PhoR associated with the phosphate ABC transporter found in most Proteobacteria, and related proteins from Gram-positive organisms are excluded. The phoR gene usually is adjacent to the response regulator phoB gene (IPR011879 from INTERPRO)..
Probab=100.00 E-value=3.2e-42 Score=288.03 Aligned_cols=195 Identities=16% Similarity=0.196 Sum_probs=146.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCC-C-----CHHHHHHHHHHHHHHHHHHH----HHHCCCCCCCCCCCCCCCCHHH
Q ss_conf 997745454227999999999996144-3-----01478988899999999863----1100112232000000000134
Q gi|254780891|r 18 LCSRICHDIISPIGAIHNSLELLDEVG-I-----EDEVMQLIRLSSMSAIIRLK----FMRLAFGYTGSVDSLIGLGDIE 87 (215)
Q Consensus 18 las~IaHdlrtPL~~I~~~~elL~~~~-~-----~~~~~~~i~~~~~~~~~l~~----~~r~~~~~~~~~~~~~~~~~~~ 87 (215)
+.|+||||||||||+|+||+|+|.+.+ . ..++++.+.+.+.||..|++ ++|++...........+...+.
T Consensus 121 FVANVSHELRTPLTVl~GyLEtl~~~~~~~~~~~~~~~l~~M~~Q~~RM~~LV~dLL~LSrlE~~~~~~~~~~V~~~~ll 200 (339)
T TIGR02966 121 FVANVSHELRTPLTVLRGYLETLEDGPVDEDPEEWNRALELMQEQSQRMQSLVEDLLTLSRLESAANPPEDEPVDVPALL 200 (339)
T ss_pred HCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHH
T ss_conf 11445211145403556899975523677880889999999999999999999999888764157888455656879999
Q ss_pred HHHHHH---HHCCCCCCCCCCC-----CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCC
Q ss_conf 444432---2012233211000-----00010001234445676646876532001111123557720479998789844
Q gi|254780891|r 88 QVIEDF---IAVDKRVQVSWTG-----EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR 159 (215)
Q Consensus 88 ~~~~~~---~~~~~~~~~~~~~-----~~~~~~~~~~qvl~NLi~NA~~a~~~gg~I~i~~~~~~~~~~i~V~D~G~Gi~ 159 (215)
.-+.+. +...+..++++.. .....+.++.++|.||+.|||+|+|+||+|+|++..++++++|+|+|||+||+
T Consensus 201 ~~l~~~A~~ls~~~~h~I~~~~pd~~~~~~G~e~~L~SAf~NLv~NAikYTp~gg~I~v~W~~~~~ga~fsV~DtG~GI~ 280 (339)
T TIGR02966 201 DHLRDEAEALSQGKQHQITFEIPDAGLDLLGNEDELRSAFSNLVSNAIKYTPEGGTITVRWRRDEGGAEFSVTDTGIGIA 280 (339)
T ss_pred HHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCEEEEEEEECCCCCC
T ss_conf 99999999997118838999823888530144777999999998875300899887999999857803999987798987
Q ss_pred CHHHH----HHHHCC--CCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEE
Q ss_conf 02458----874054--5457899872049999999997098799998779926999994
Q gi|254780891|r 160 FPEKF----TQIVDG--NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 (215)
Q Consensus 160 ~~e~~----~~~~~~--~~~~~~~g~GlGl~~~~~i~~~~gG~i~v~~~~~~g~~f~~~l 213 (215)
|+.+ ||||+= .-++..+||||||||||-+.++|+++|.++|..|+||+|++.+
T Consensus 281 -~eHipRLTERFYRVD~~RSR~tGGTGLGLAIVKH~L~rH~a~L~I~Se~G~GS~F~~~F 339 (339)
T TIGR02966 281 -PEHIPRLTERFYRVDKSRSRDTGGTGLGLAIVKHVLSRHHARLEIESELGKGSTFSFIF 339 (339)
T ss_pred -HHHCCCCCCEEEEECHHHCCCCCCCCCHHHHHHHHHHCCCCEEEEEEEECCCEEEEEEC
T ss_conf -31377542001230533415788984336899998741487899998853760688759
No 5
>PRK09303 adaptive-response sensory kinase; Validated
Probab=100.00 E-value=1.9e-40 Score=276.85 Aligned_cols=212 Identities=16% Similarity=0.153 Sum_probs=147.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---CC---HHHHHHHHHHHH----HH----HHHHHHH
Q ss_conf 0159999967687999997745454227999999999996144---30---147898889999----99----9986311
Q gi|254780891|r 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVG---IE---DEVMQLIRLSSM----SA----IIRLKFM 67 (215)
Q Consensus 2 ~~~~~~~~~~~~laallas~IaHdlrtPL~~I~~~~elL~~~~---~~---~~~~~~i~~~~~----~~----~~l~~~~ 67 (215)
+++.....++.++-.-+.|.||||||||||+|.+++|+|.... .. ...++.+.+.++ .+ ++++++.
T Consensus 136 rqe~E~L~e~~r~K~~Fla~vSHELRTPLTaI~g~~e~L~~~~~~~~~~~~~~~l~~l~~~~~~~~~~L~~LI~DLLd~s 215 (378)
T PRK09303 136 RQENETLLEQLKFKDRLLAMLAHDLRTPLTAASLAVETLELGQIDPSEELSPALIEQLQDQARRQLEEIERLITDLLEVG 215 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99899999999999999997367615319999999999864257974166799999999999999999999999999998
Q ss_pred HCCCCCCCCCCCCCCCCHHHH----HHHHHH-HCCCCCCCCCCCC---CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 001122320000000001344----444322-0122332110000---00100012344456766468765320011111
Q gi|254780891|r 68 RLAFGYTGSVDSLIGLGDIEQ----VIEDFI-AVDKRVQVSWTGE---KIDLSRERAKILLNLFMVAHASLPRGGKVTIS 139 (215)
Q Consensus 68 r~~~~~~~~~~~~~~~~~~~~----~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~qvl~NLi~NA~~a~~~gg~I~i~ 139 (215)
+...+.........++.++.. .++... .++..+..+.+.+ ...++..+.||+.||+.||+||+|.||+|+|+
T Consensus 216 r~e~g~l~l~~~~~dL~~lv~evi~~~~~~a~~k~i~l~~dip~dlp~V~aD~~rL~QVl~NLL~NAiKyT~~gG~I~I~ 295 (378)
T PRK09303 216 RTRWEALQFNPQKLDLGSLCQEVILELEKRWLAKSLEIQTDIPSDLPSVYADQRRIRQVLLNLLDNAIKYTPEGGTITLT 295 (378)
T ss_pred HHHCCCCEEEEEEECHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCEEEECHHHHHHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 87538863146887699999999999898998389789997689997287689999999999999999858999869999
Q ss_pred C-CCCCCCEEEEEEECCCCCCCHHHHHHHHCCCC----CCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEE
Q ss_conf 2-35577204799987898440245887405454----578998720499999999970987999987799269999941
Q gi|254780891|r 140 V-QDSKNENIFSLKINGNLARFPEKFTQIVDGNV----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 (215)
Q Consensus 140 ~-~~~~~~~~i~V~D~G~Gi~~~e~~~~~~~~~~----~~~~~g~GlGl~~~~~i~~~~gG~i~v~~~~~~g~~f~~~l~ 214 (215)
+ ...++++.|+|+|+|+||+ ++...++|++|+ +++.+|+||||++|+.|++.|||+|+|+|.+|+|++|+++||
T Consensus 296 ~~~~~~~~V~isV~DtG~GIp-~e~~~rIFe~F~R~~~s~~~~GtGLGLaIvk~IVe~HgG~I~V~S~~g~GS~Ft~tLP 374 (378)
T PRK09303 296 MLHRTTQKVQVSICDTGPGIP-EEEQERIFEDRVRLPRDEGTEGYGIGLSVCRRIVEVHYGQIWVDSEPGQGSCFHFTLP 374 (378)
T ss_pred EEEECCCEEEEEEEEECCCCC-HHHHHHHCCCCEECCCCCCCCCEEHHHHHHHHHHHHCCCEEEEEECCCCCEEEEEEEE
T ss_conf 998139989999998078889-8999875636344568999883127999999999987997999943998359999982
No 6
>PRK11006 phoR phosphate regulon sensor protein; Provisional
Probab=100.00 E-value=1.4e-39 Score=271.34 Aligned_cols=198 Identities=15% Similarity=0.197 Sum_probs=148.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCC----HHHHHHHHHHHHHHHHHHH----HHHCCCCCCCCCCCCCCCCHHHH
Q ss_conf 999774545422799999999999614430----1478988899999999863----11001122320000000001344
Q gi|254780891|r 17 LLCSRICHDIISPIGAIHNSLELLDEVGIE----DEVMQLIRLSSMSAIIRLK----FMRLAFGYTGSVDSLIGLGDIEQ 88 (215)
Q Consensus 17 llas~IaHdlrtPL~~I~~~~elL~~~~~~----~~~~~~i~~~~~~~~~l~~----~~r~~~~~~~~~~~~~~~~~~~~ 88 (215)
-+.|+||||||||||+|.||+|+|.+.... .++++.+.+.+.++..+++ +.+...+.........+...+.+
T Consensus 206 dFvAnvSHELRTPLT~I~G~~ElL~~~~~~~~~~~~~l~~i~~~~~Rm~~LI~dLL~lsrle~~~~~~~~~~vd~~~ll~ 285 (431)
T PRK11006 206 NFFANVSHELRTPLTVLQGYLEMMEEQPLEGPMREKALHTMREQTQRMEGLVKQLLTLSKIEAAPTHLLNEKVDVPMMLR 285 (431)
T ss_pred HHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHH
T ss_conf 99986208661779999999999857999809999999999999999999999999997642587521365313999999
Q ss_pred HHHHHH----HCCCCCCCCC--CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCHH
Q ss_conf 444322----0122332110--0000010001234445676646876532001111123557720479998789844024
Q gi|254780891|r 89 VIEDFI----AVDKRVQVSW--TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162 (215)
Q Consensus 89 ~~~~~~----~~~~~~~~~~--~~~~~~~~~~~~qvl~NLi~NA~~a~~~gg~I~i~~~~~~~~~~i~V~D~G~Gi~~~e 162 (215)
.+.... .....+.++. +.....++..+.|++.||+.||++|+|.||.|.|++...++.+.|+|+|+|+||+ |+
T Consensus 286 ~l~~~~~~l~~~~~~i~~~~~~~~~v~~D~~~L~qvl~NLi~NAikytp~g~~I~I~~~~~~~~~~i~V~D~G~GI~-~e 364 (431)
T PRK11006 286 VLEREAQTLSQKKHTITFEVDDSLKVLGNEDQLRSAISNLVYNAVNHTPEGTHITVRWQRVPHGAEFSVEDNGPGIA-PE 364 (431)
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCEEEECHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCEEEEEEEECCCCCC-HH
T ss_conf 99999999986256665568998279978999999999999989974799977999999949989999998387859-89
Q ss_pred HHHHHHCCCC------CCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEEC
Q ss_conf 5887405454------5789987204999999999709879999877992699999419
Q gi|254780891|r 163 KFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 (215)
Q Consensus 163 ~~~~~~~~~~------~~~~~g~GlGl~~~~~i~~~~gG~i~v~~~~~~g~~f~~~l~~ 215 (215)
..+++|++|+ +++.+|+||||+|||.|++.|||+|+++|.+|+||+|+++|||
T Consensus 365 ~~~riFerFyR~d~~rs~~~gGtGLGLaIvK~Ive~HgG~I~v~S~~g~Gt~F~~~lP~ 423 (431)
T PRK11006 365 HIPRLTERFYRVDKARSRQTGGSGLGLAIVKHALNHHDSRLEIESTVGKGTRFSFVLPE 423 (431)
T ss_pred HHHHHCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCEEEEEECCC
T ss_conf 99986268882888887999955489999999999859989999559985599998486
No 7
>PRK10490 sensor protein KdpD; Provisional
Probab=100.00 E-value=7e-39 Score=266.87 Aligned_cols=211 Identities=13% Similarity=0.088 Sum_probs=156.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----CHHHHHHHHHHHHH----HHHHHHHHHCCCCCC
Q ss_conf 599999676879999977454542279999999999961443-----01478988899999----999863110011223
Q gi|254780891|r 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGI-----EDEVMQLIRLSSMS----AIIRLKFMRLAFGYT 74 (215)
Q Consensus 4 ~~~~~~~~~~laallas~IaHdlrtPL~~I~~~~elL~~~~~-----~~~~~~~i~~~~~~----~~~l~~~~r~~~~~~ 74 (215)
+-....++.+|-+-+-|.|||||||||++|.+++++|..... ..+....|.+.+.+ +++++++.|...+..
T Consensus 653 ~a~~~aE~ErLRsalLssVSHDLRTPLtsI~G~a~~L~~~~~~~~~~~~~~~~~I~~e~~rL~rLV~nLLdmsRle~G~l 732 (895)
T PRK10490 653 QARLASEREQLRNALLAALSHDLRTPLTVLFGQAEILTLDLASEGSPHARQASEIRQHVLNTTRLVNNLLDMARIQSGGF 732 (895)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 98887777789999998603435786999999999985477788288999999999999999999999999987636997
Q ss_pred CCCCCCCCCCHHHHHHHHHHH---CCCCCCCCCCCCC---CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEE
Q ss_conf 200000000013444443220---1223321100000---0100012344456766468765320011111235577204
Q gi|254780891|r 75 GSVDSLIGLGDIEQVIEDFIA---VDKRVQVSWTGEK---IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENI 148 (215)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~---~~~~~~~~qvl~NLi~NA~~a~~~gg~I~i~~~~~~~~~~ 148 (215)
.....+..+.++...+.+... ...++.++.+.+. ..++..+.||+.||+.||++|+|.++.|.|++..+++.+.
T Consensus 733 ~l~~~~~~l~evv~~al~~~~~~~~~~~i~v~~~~~~~~v~~D~~lleQVL~NLl~NAiKytp~~~~I~v~a~~~~~~v~ 812 (895)
T PRK10490 733 NLKKEWLTLEEVVGSALQMLEPGLSQHPINLSLPEPLTLIHVDGPLFERVLINLLENAVKYAGAQAEIGIDAHVEGENLQ 812 (895)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEECHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCEEE
T ss_conf 66464206999999999999866126967999569870698789999999999999999858999709999999799999
Q ss_pred EEEEECCCCCCCHHHHHHHHCCCCC----CCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEEC
Q ss_conf 7999878984402458874054545----789987204999999999709879999877992699999419
Q gi|254780891|r 149 FSLKINGNLARFPEKFTQIVDGNVE----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 (215)
Q Consensus 149 i~V~D~G~Gi~~~e~~~~~~~~~~~----~~~~g~GlGl~~~~~i~~~~gG~i~v~~~~~~g~~f~~~l~~ 215 (215)
|+|+|+||||+ ++..+++|++|+. +...|+||||+|||.|++.|||+|+++|.+++|++|+++||.
T Consensus 813 i~V~D~G~GIp-~~~~~~IFe~F~R~~~~~~~~GtGLGLaI~k~IveAhGG~I~~~s~~ggGa~F~~~LPl 882 (895)
T PRK10490 813 LDVWDNGPGIP-PGQEQLIFDKFARGNKESAVPGVGLGLAICRAIVDVHGGTITAENRPEGGACFRVTLPQ 882 (895)
T ss_pred EEEEEECCCCC-HHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCEEEEEEEECC
T ss_conf 99998089879-79999755687128999999974478999999999879989999569980699998329
No 8
>PRK11100 sensory histidine kinase CreC; Provisional
Probab=100.00 E-value=1.5e-38 Score=264.72 Aligned_cols=198 Identities=18% Similarity=0.153 Sum_probs=147.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH---HHHHHHHHHHHHHHHH----HHHHCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 99977454542279999999999961443014---7898889999999986----3110011223200000000013444
Q gi|254780891|r 17 LLCSRICHDIISPIGAIHNSLELLDEVGIEDE---VMQLIRLSSMSAIIRL----KFMRLAFGYTGSVDSLIGLGDIEQV 89 (215)
Q Consensus 17 llas~IaHdlrtPL~~I~~~~elL~~~~~~~~---~~~~i~~~~~~~~~l~----~~~r~~~~~~~~~~~~~~~~~~~~~ 89 (215)
-+.+.+||||||||++|++++|+|+++...++ +.+.|.+.+.++..++ ++.+...+.........++.++.+-
T Consensus 258 ~fva~vSHELRTPLt~I~g~~ElL~~~~~~e~~~~~l~~I~~e~~RL~~LV~~LL~larle~~~~~~~~~~vdl~~ll~~ 337 (475)
T PRK11100 258 QYVQTLTHELKSPLAAIRGAAELLQEDPPPEDRQRFTGNILAQSARLQQLIDRLLELARLEQRQELEVLEPVALAALLEE 337 (475)
T ss_pred HHHHHCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECHHHHHHH
T ss_conf 99985408651179999999999738999899999999999999999999999999987515887675548759999999
Q ss_pred -HHHHH--HCCCCCCCCCCCCC---CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCHHH
Q ss_conf -44322--01223321100000---0100012344456766468765320011111235577204799987898440245
Q gi|254780891|r 90 -IEDFI--AVDKRVQVSWTGEK---IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 (215)
Q Consensus 90 -~~~~~--~~~~~~~~~~~~~~---~~~~~~~~qvl~NLi~NA~~a~~~gg~I~i~~~~~~~~~~i~V~D~G~Gi~~~e~ 163 (215)
+..+. .....+.+..+.+. ..++..+.|++.||+.||++|+|.+|+|+|++..+++.+.|+|+|+|+||+ ++.
T Consensus 338 ~~~~~~~~~~~~~i~l~~~~~~~~v~~D~~~L~qvl~NLl~NAikys~~~g~I~I~~~~~~~~~~i~V~D~G~GIp-~e~ 416 (475)
T PRK11100 338 LVEAREAQAAAKGITLRLRPDDAAVLGDPFLLRQALGNLLDNAIDFTPEGGTITLSAERDGEQVALSVEDSGPGIP-DYA 416 (475)
T ss_pred HHHHHHHHHHHCCEEEEEECCCCEEEECHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCEEEEEEEECCCCCC-HHH
T ss_conf 9999999998689299995787669708999999999999999973899977999999969999999998488878-899
Q ss_pred HHHHHCCCCC-----CCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEEC
Q ss_conf 8874054545-----789987204999999999709879999877992699999419
Q gi|254780891|r 164 FTQIVDGNVE-----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 (215)
Q Consensus 164 ~~~~~~~~~~-----~~~~g~GlGl~~~~~i~~~~gG~i~v~~~~~~g~~f~~~l~~ 215 (215)
.+++|++|++ ++.+|+||||+||+.|++.|||+|+++|.+++|++|+++|||
T Consensus 417 l~~IFerFys~~r~~~~~~GsGLGLsIvk~Iv~~HgG~I~v~s~~~~Gt~f~i~LP~ 473 (475)
T PRK11100 417 LPRIFERFYSLPRPANGRKSTGLGLAFVREVARLHGGEVTLRNRPEGGVLATLTLPR 473 (475)
T ss_pred HHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCEEEEEEECCC
T ss_conf 988616780377799998863079999999999859989999669980799999389
No 9
>PRK13557 histidine kinase; Provisional
Probab=100.00 E-value=2.7e-38 Score=263.10 Aligned_cols=209 Identities=14% Similarity=0.124 Sum_probs=151.6
Q ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHC----CCC----HHHHHHHHHHHHHHHHHH----HHHHCCC
Q ss_conf 999967687999--99774545422799999999999614----430----147898889999999986----3110011
Q gi|254780891|r 6 CFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV----GIE----DEVMQLIRLSSMSAIIRL----KFMRLAF 71 (215)
Q Consensus 6 ~~~~~~~~laal--las~IaHdlrtPL~~I~~~~elL~~~----~~~----~~~~~~i~~~~~~~~~l~----~~~r~~~ 71 (215)
....++.|+.++ |+++|||||||||++|.+++++|... ..+ .++.+.|...++++..++ +|.|...
T Consensus 150 ~~L~qaqklealg~~~a~isHEirnPL~~I~G~~~lL~~~~~~~~~~~~~~~~~l~~i~~~~~r~~~Li~~lL~fsr~~~ 229 (538)
T PRK13557 150 DALRQAQKMEALGQLTGGIAHDFNNLLQVMSGYLDVLQMALSKPDADRERIARSVEHIRAAAERAATLTQQLLAFARKQK 229 (538)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 99999999999999998878876269999999999998640168889999999999999999999999999999758276
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCC---CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCC-------
Q ss_conf 2232000000000134444432201223321100000---010001234445676646876532001111123-------
Q gi|254780891|r 72 GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK---IDLSRERAKILLNLFMVAHASLPRGGKVTISVQ------- 141 (215)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~qvl~NLi~NA~~a~~~gg~I~i~~~------- 141 (215)
......+....+.++..++.........+.++..... ..++.++.|++.||+.||++|++.+|.|+|++.
T Consensus 230 l~~~~~~l~~lv~~~~~l~~~~~~~~i~l~~~~~~~l~~~~~D~~~l~qvl~NLl~NA~~a~~~gg~i~i~~~~~~~~~~ 309 (538)
T PRK13557 230 LDGRVVNLNGLVSGMGEMAERTLGDAVTIETDLAPDLWNCRIDPTQAEVALLNVLINARDAMPEGGRVTVRTENVEITEH 309 (538)
T ss_pred CCCEEECHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCEEEECHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCC
T ss_conf 87717729999999999999985299199998079887087558999999999898799865789759999987641542
Q ss_pred --------CCCCCEEEEEEECCCCCCCHHHHHHHHCCCCCCCC--CCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEE
Q ss_conf --------55772047999878984402458874054545789--98720499999999970987999987799269999
Q gi|254780891|r 142 --------DSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211 (215)
Q Consensus 142 --------~~~~~~~i~V~D~G~Gi~~~e~~~~~~~~~~~~~~--~g~GlGl~~~~~i~~~~gG~i~v~~~~~~g~~f~~ 211 (215)
..+.++.|+|+|+|+||+ ++...++|+||++++. +|+||||++|+.|++.|||+|+++|.+|.||+|++
T Consensus 310 ~~~~~~~~~~g~~v~i~V~DtG~GI~-~e~~~rIFepFfttk~~~~GtGLGLaIv~~iV~~~gG~I~v~S~~G~GttF~v 388 (538)
T PRK13557 310 DLAMYHQLPPGRYVSIAVTDTGSGMP-PEILARVMEPFFTTKEEGKGTGLGLSMVYGFAKQSGGAVRIYSEVGEGTTVRL 388 (538)
T ss_pred CCCCCCCCCCCCEEEEEEEECCCCCC-HHHHHHHHCCCEEECCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCEEEEE
T ss_conf 10012457888789999998689889-89999772501042245787772499999999987995999932898779999
Q ss_pred EEEC
Q ss_conf 9419
Q gi|254780891|r 212 LLEK 215 (215)
Q Consensus 212 ~l~~ 215 (215)
+||.
T Consensus 389 ~lP~ 392 (538)
T PRK13557 389 YFPA 392 (538)
T ss_pred EEEC
T ss_conf 9867
No 10
>PRK10549 signal transduction histidine-protein kinase BaeS; Provisional
Probab=100.00 E-value=4.2e-38 Score=261.94 Aligned_cols=197 Identities=10% Similarity=0.130 Sum_probs=145.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHH----HHHCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 999774545422799999999999614--4301478988899999999863----1100112232000000000134444
Q gi|254780891|r 17 LLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSMSAIIRLK----FMRLAFGYTGSVDSLIGLGDIEQVI 90 (215)
Q Consensus 17 llas~IaHdlrtPL~~I~~~~elL~~~--~~~~~~~~~i~~~~~~~~~l~~----~~r~~~~~~~~~~~~~~~~~~~~~~ 90 (215)
-+.+.|||||||||++|++++|.|.+. ...++.+..+...+.++.++++ +.+...+.........++.++.+.+
T Consensus 243 ~f~a~iSHELRTPLt~i~g~le~l~d~~~~~~~e~l~~i~~e~~rl~~Lv~dLl~ls~~~~~~~~~~~~~vdl~~ll~~~ 322 (467)
T PRK10549 243 DFMADISHELRTPLAVLRGELEAIQDGVRKFTPESVASLQAEVGTLTKLVDDLHQLSLSDEGALAYQKTPVDLVPLLEVA 322 (467)
T ss_pred HHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH
T ss_conf 99998888751589999999999871655457999999999999999999999999875456754467333389999999
Q ss_pred -HHHHH--CCCCCCCCCCC----CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCHHH
Q ss_conf -43220--12233211000----000100012344456766468765320011111235577204799987898440245
Q gi|254780891|r 91 -EDFIA--VDKRVQVSWTG----EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 (215)
Q Consensus 91 -~~~~~--~~~~~~~~~~~----~~~~~~~~~~qvl~NLi~NA~~a~~~gg~I~i~~~~~~~~~~i~V~D~G~Gi~~~e~ 163 (215)
..+.. ....+.+..+. ....++..+.|++.||+.||++|++.+|.|.|++..+++.+.|+|+|+||||+ ++.
T Consensus 323 ~~~~~~~~~~~~i~l~~~~~~~~~v~~D~~~L~qvl~NLl~NAikyt~~~g~I~I~~~~~~~~v~i~V~D~G~GI~-~e~ 401 (467)
T PRK10549 323 GGAFRERFASRGLTLQFSLPDSATVFGDPDRLMQLFNNLLENSLRYTDSGGSLHISAEQHDKTLRLTFADSAPGVS-DEQ 401 (467)
T ss_pred HHHHHHHHHHCCCEEEEECCCCCEEEECHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCEEEEEEEEECCCCC-HHH
T ss_conf 9999999984595899975988469977999999999999999984899987999999979999999998188879-899
Q ss_pred HHHHHCCCCCCC------CCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEE
Q ss_conf 887405454578------998720499999999970987999987799269999941
Q gi|254780891|r 164 FTQIVDGNVEST------IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 (215)
Q Consensus 164 ~~~~~~~~~~~~------~~g~GlGl~~~~~i~~~~gG~i~v~~~~~~g~~f~~~l~ 214 (215)
.+++|+||+..+ .+|+||||+||+.|++.|||+|++++.+++|++|++.||
T Consensus 402 l~~IFe~Fyr~d~sr~r~~gGsGLGLaIvk~Iv~~HgG~I~v~s~~~~G~~f~i~LP 458 (467)
T PRK10549 402 LQKLFERFYRTEGSRNRASGGSGLGLAICLNIVEAHNGRIIAAHSPFGGVSITVELP 458 (467)
T ss_pred HHHHCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCEEEEEEEEE
T ss_conf 998668987388888899996128999999999983998999967998579999952
No 11
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional
Probab=100.00 E-value=1.4e-37 Score=258.51 Aligned_cols=196 Identities=10% Similarity=0.074 Sum_probs=152.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHH----HHHHHHHHHCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 9997745454227999999999996144301---478988899999----999863110011223200000000013444
Q gi|254780891|r 17 LLCSRICHDIISPIGAIHNSLELLDEVGIED---EVMQLIRLSSMS----AIIRLKFMRLAFGYTGSVDSLIGLGDIEQV 89 (215)
Q Consensus 17 llas~IaHdlrtPL~~I~~~~elL~~~~~~~---~~~~~i~~~~~~----~~~l~~~~r~~~~~~~~~~~~~~~~~~~~~ 89 (215)
.+-|.+||||||||.+|.|++|+|.+...++ ++++.|..+++. ++++++|++...+........+...++.+-
T Consensus 472 ~FLAnMSHEIRTPLnGIlG~lELL~~t~L~~~Qr~~l~tI~~Ss~~LL~lINDILDfSKIEAGkl~Le~~~F~l~~lv~~ 551 (947)
T PRK10841 472 MFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNH 551 (947)
T ss_pred HHHHHCCHHHCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHH
T ss_conf 99875856436128999999999807999989999999999999999999999999998804984798525689999999
Q ss_pred HHHH-----HHCCCCCCCCCCCCC----CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCC
Q ss_conf 4432-----201223321100000----0100012344456766468765320011111235577204799987898440
Q gi|254780891|r 90 IEDF-----IAVDKRVQVSWTGEK----IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 (215)
Q Consensus 90 ~~~~-----~~~~~~~~~~~~~~~----~~~~~~~~qvl~NLi~NA~~a~~~gg~I~i~~~~~~~~~~i~V~D~G~Gi~~ 160 (215)
+... ..++..+.+..++.. ..+|.++.|++.||+.||+||++.|+ |.+++..+++.+.|+|+|||.||+
T Consensus 552 v~~~~~~~A~~K~L~L~~~idp~vP~~v~GDp~RLrQIL~NLLsNAIKFT~~G~-I~L~V~~~~~~L~fsV~DTGIGIs- 629 (947)
T PRK10841 552 ITANYLPLVVKKQLGLYCFIEPDVPVSLNGDPMRLQQVISNLLSNAIKFTDTGC-IILHVRVDGDYLSFRVRDTGVGIP- 629 (947)
T ss_pred HHHHHHHHHHHCCCEEEEEECCCCCCCEEECHHHHHHHHHHHHHHHEEECCCCE-EEEEEEECCCEEEEEEEECCCCCC-
T ss_conf 999999999973987999979999965860688999999998877746679958-999999849999999998289989-
Q ss_pred HHHHHHHHCCCCC------CCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEE
Q ss_conf 2458874054545------78998720499999999970987999987799269999941
Q gi|254780891|r 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 (215)
Q Consensus 161 ~e~~~~~~~~~~~------~~~~g~GlGl~~~~~i~~~~gG~i~v~~~~~~g~~f~~~l~ 214 (215)
++...++|+||.. ++.+|+||||+||+++|+.+||+|+|+|.+|.|++|++.||
T Consensus 630 ee~~~~LFepF~QaD~S~tR~yGGTGLGLAI~krLVeLMGG~I~VeSe~G~GStFtf~LP 689 (947)
T PRK10841 630 AKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLINMMDGDISVDSEPGMGSQFTVRIP 689 (947)
T ss_pred HHHHHHHHCHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEECCCCEEEEEEEEE
T ss_conf 999998847111578754345799874199999999975995899916998079999975
No 12
>PRK09835 sensor kinase CusS; Provisional
Probab=100.00 E-value=6.3e-37 Score=254.44 Aligned_cols=197 Identities=16% Similarity=0.144 Sum_probs=139.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCHHHHHH---H----HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHH-
Q ss_conf 9997745454227999999999996144-30147898---8----8999999998631100112232000000000134-
Q gi|254780891|r 17 LLCSRICHDIISPIGAIHNSLELLDEVG-IEDEVMQL---I----RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE- 87 (215)
Q Consensus 17 llas~IaHdlrtPL~~I~~~~elL~~~~-~~~~~~~~---i----~~~~~~~~~l~~~~r~~~~~~~~~~~~~~~~~~~- 87 (215)
-++|.+||||||||++|++++|++...+ ..++..+. + ++..+.+.+++.+.|...+.........++.++.
T Consensus 264 ~f~a~vSHELRTPLt~i~~~~e~~l~~~~~~~~~~~~l~~~~~e~~rl~~lv~~lL~lar~e~~~~~~~~~~~dl~~~~~ 343 (482)
T PRK09835 264 NFSADIAHEIRTPITNLITQTEIALSQSRSQKELEDVLYSNLEELTRMAKMVSDMLFLAQADNNQLIPEKKMLNLADEVG 343 (482)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHH
T ss_conf 99999889871899999999999853899869999999999999999999999999987743588766673456999999
Q ss_pred HHHHHHH--HCCCCCCCCCCCC---CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCHH
Q ss_conf 4444322--0122332110000---0010001234445676646876532001111123557720479998789844024
Q gi|254780891|r 88 QVIEDFI--AVDKRVQVSWTGE---KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162 (215)
Q Consensus 88 ~~~~~~~--~~~~~~~~~~~~~---~~~~~~~~~qvl~NLi~NA~~a~~~gg~I~i~~~~~~~~~~i~V~D~G~Gi~~~e 162 (215)
+++..+. .....+++....+ ...++..+.|++.||+.||++|+|.|+.|+|++...++.+.|.|+|+|+||+ ++
T Consensus 344 ~~~~~~~~~~~~~~i~~~~~~~~~~v~~d~~~l~~~l~NLl~NAikys~~g~~i~i~~~~~~~~v~i~V~D~G~GI~-~e 422 (482)
T PRK09835 344 KVFDFFEALAEDRGVELRFVGDPCQVAGDPLMLRRALSNLLSNALRYTPEGEAIVVRCQTVDHQVQVVVENPGTPIA-PE 422 (482)
T ss_pred HHHHHHHHHHHHCCCEEEEECCCEEEEECHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCEEEEEEEECCCCCC-HH
T ss_conf 99999999998689289982787089987999999999999999984899986999999829989999996587889-89
Q ss_pred HHHHHHCCCCCC------CCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEEC
Q ss_conf 588740545457------89987204999999999709879999877992699999419
Q gi|254780891|r 163 KFTQIVDGNVES------TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 (215)
Q Consensus 163 ~~~~~~~~~~~~------~~~g~GlGl~~~~~i~~~~gG~i~v~~~~~~g~~f~~~l~~ 215 (215)
..+++|++|+.. +.+|+||||+||+.|++.|||+|+++|. ++|++|+++|||
T Consensus 423 ~~~~iFerFyR~d~sr~~~~~G~GLGLaIvk~Iv~~hgG~i~v~s~-~~Gt~f~i~lPr 480 (482)
T PRK09835 423 HLPRLFDRFYRVDPSRQRKGEGSGIGLAIVKSIVVAHKGTVAVTSD-ARGTRFVISLPR 480 (482)
T ss_pred HHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEC-CCCEEEEEEEEC
T ss_conf 9987667975189888899994648999999999982998999963-991899999307
No 13
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=100.00 E-value=8.7e-37 Score=253.57 Aligned_cols=197 Identities=14% Similarity=0.132 Sum_probs=147.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH---HHHHHHHHHHH----HHHHHHHHHCCCC--CCCCCCCCCCCCHH
Q ss_conf 999977454542279999999999961443014---78988899999----9998631100112--23200000000013
Q gi|254780891|r 16 ALLCSRICHDIISPIGAIHNSLELLDEVGIEDE---VMQLIRLSSMS----AIIRLKFMRLAFG--YTGSVDSLIGLGDI 86 (215)
Q Consensus 16 allas~IaHdlrtPL~~I~~~~elL~~~~~~~~---~~~~i~~~~~~----~~~l~~~~r~~~~--~~~~~~~~~~~~~~ 86 (215)
+.+-|.+||||||||++|.|++++|.+.+..++ +++.|..+.+. ++++++|.+...+ .....+.++...++
T Consensus 445 S~FLA~MSHEIRTPLNgIlG~~eLL~~~~l~~~qr~~l~~I~~s~~~LL~lInDILD~SkiEaG~~~l~l~~~pf~l~~l 524 (912)
T PRK11466 445 SAFLAAMSHEIRTPLYGILGTAQLLADNPALNAQRDDLRAITDSGESLLTILNDILDYSAIEAGGKNVSVSDEPFEPRPL 524 (912)
T ss_pred HHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHH
T ss_conf 99998713976775999999999984799998999999999999999999999999999981899813886115689999
Q ss_pred ----HHHHHHHH-HCCCCCCCCCC--CC--CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCC
Q ss_conf ----44444322-01223321100--00--00100012344456766468765320011111235577204799987898
Q gi|254780891|r 87 ----EQVIEDFI-AVDKRVQVSWT--GE--KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNL 157 (215)
Q Consensus 87 ----~~~~~~~~-~~~~~~~~~~~--~~--~~~~~~~~~qvl~NLi~NA~~a~~~gg~I~i~~~~~~~~~~i~V~D~G~G 157 (215)
...+.... .+...+.+... .| ...++.++.|++.||+.||+||++. |.|.+.+..+++.+.|.|+|+|+|
T Consensus 525 l~~v~~~~~~~a~~k~l~l~~~~~~~lp~~v~gD~~RLrQIL~NLlsNAiKFT~~-G~V~l~~~~~~~~l~~~V~DTGiG 603 (912)
T PRK11466 525 LESTLQLMSGRVKGRPIRLATDIADDVPSALMGDPRRIRQVITNLLSNALRFTDE-GSIVLRSRTDGEQWLVEVEDSGCG 603 (912)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEECCCCCCEEEECHHHHHHHHHHHHHHHCCCCCC-CEEEEEEEECCCEEEEEEEECCCC
T ss_conf 9999999999998379789997279998608635889999999999987061899-679999998697899998508999
Q ss_pred CCCHHHHHHHHCCCCC--CCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEE
Q ss_conf 4402458874054545--78998720499999999970987999987799269999941
Q gi|254780891|r 158 ARFPEKFTQIVDGNVE--STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 (215)
Q Consensus 158 i~~~e~~~~~~~~~~~--~~~~g~GlGl~~~~~i~~~~gG~i~v~~~~~~g~~f~~~l~ 214 (215)
|+ ++...++|+||.. ++.+|+||||+|||.+++.|||+|+|+|.+|.|++|+++||
T Consensus 604 I~-~e~~~~IF~~F~Q~~~~~gGtGLGLaI~k~LvelMGG~I~V~S~~G~GS~F~~~LP 661 (912)
T PRK11466 604 ID-PAKLAEIFQPFVQVSGKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLP 661 (912)
T ss_pred CC-HHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCEEEEEEEE
T ss_conf 99-99999884476158899899266899999999987997999716998728999997
No 14
>PRK11073 glnL nitrogen regulation protein NR(II); Provisional
Probab=100.00 E-value=4.4e-36 Score=249.09 Aligned_cols=197 Identities=14% Similarity=0.122 Sum_probs=138.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHHHHHHHHHHCCCC--CCCCCCCCCCCCHHHHHH
Q ss_conf 9999774545422799999999999614430---14789888999999998631100112--232000000000134444
Q gi|254780891|r 16 ALLCSRICHDIISPIGAIHNSLELLDEVGIE---DEVMQLIRLSSMSAIIRLKFMRLAFG--YTGSVDSLIGLGDIEQVI 90 (215)
Q Consensus 16 allas~IaHdlrtPL~~I~~~~elL~~~~~~---~~~~~~i~~~~~~~~~l~~~~r~~~~--~~~~~~~~~~~~~~~~~~ 90 (215)
..|++.+||||||||++|.+++++|.+...+ .++.+.+.+.+.++.++++.+..... ............++.+++
T Consensus 131 ~e~~~~iaHelrnPL~~I~g~~~ll~~~~~d~~~~e~~~~i~~~~~rl~~li~~ll~~~~~~~~~~~~l~~~~~~~~~~~ 210 (348)
T PRK11073 131 RDLVRGLAHEIKNPLGGLRGAAQLLSKALPDPALTEYTKVIIEQADRLRNLVDRLLGPQRPGTHITESIHKVAERVVQLV 210 (348)
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
T ss_conf 99998401874785799999999997417998999999999999999999999986441268877547999999999999
Q ss_pred HHHHHCCCCCCCCCCCC---CCCCCHHHHHHHHHHHHHHHHHH-HHHCCCCCCCCCC----------CCCEEEEEEECCC
Q ss_conf 43220122332110000---00100012344456766468765-3200111112355----------7720479998789
Q gi|254780891|r 91 EDFIAVDKRVQVSWTGE---KIDLSRERAKILLNLFMVAHASL-PRGGKVTISVQDS----------KNENIFSLKINGN 156 (215)
Q Consensus 91 ~~~~~~~~~~~~~~~~~---~~~~~~~~~qvl~NLi~NA~~a~-~~gg~I~i~~~~~----------~~~~~i~V~D~G~ 156 (215)
.........+..+.++. ...++..+.|+|.||+.||++|+ +.+|.|.+.+... ...++|.|+|+|+
T Consensus 211 ~~~~~~~i~i~~~~~~~~~~i~~d~~~l~qVl~NLl~NAik~~~~~~g~i~i~~~~~~~~~i~~~~~~~~~~i~V~D~G~ 290 (348)
T PRK11073 211 SLELPDNVRLIRDYDPSLPELAHDPDQIEQVLLNIVRNALQALGPEGGEITLRTRTAFQLTLHGERYRLAARIDIEDNGP 290 (348)
T ss_pred HHHCCCCCEEEEEECCCCCEEEECHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCEEEEEEEEECCC
T ss_conf 98565780999960788872644687889999999999999836699779999964333221453233048999999088
Q ss_pred CCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEE
Q ss_conf 8440245887405454578998720499999999970987999987799269999941
Q gi|254780891|r 157 LARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 (215)
Q Consensus 157 Gi~~~e~~~~~~~~~~~~~~~g~GlGl~~~~~i~~~~gG~i~v~~~~~~g~~f~~~l~ 214 (215)
||+ |+..+++|.|+++++.+|+|||||+|+.||+.|||+|+|+|.+|+ |+|++.||
T Consensus 291 GI~-~e~~~~iF~pf~ttk~~GtGLGL~ivk~ive~hgG~I~v~S~~g~-t~F~i~lP 346 (348)
T PRK11073 291 GIP-PHLQDTLFYPMVSGREGGTGLGLSIARNLIDQHSGKIEFTSWPGH-TEFSVYLP 346 (348)
T ss_pred CCC-HHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCE-EEEEEEEE
T ss_conf 789-899997377836799898177899999999986998999982891-99999996
No 15
>PRK10604 sensor protein RstB; Provisional
Probab=100.00 E-value=4.7e-36 Score=248.90 Aligned_cols=196 Identities=16% Similarity=0.064 Sum_probs=141.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH--HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHH-HHHHHHH
Q ss_conf 999774545422799999999999614430147--8988899999999863110011223200000000013-4444432
Q gi|254780891|r 17 LLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDI-EQVIEDF 93 (215)
Q Consensus 17 llas~IaHdlrtPL~~I~~~~elL~~~~~~~~~--~~~i~~~~~~~~~l~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~ 93 (215)
.+++.|||||||||+.|+++++++++....+.. ...+.+..+.++.+++++|.............+..+. .+.+.++
T Consensus 214 ~f~a~vSHELRTPLt~i~~~lell~~~~~~e~~~l~~~i~~l~~lv~~lL~larl~~~~~~l~~~~~dl~~~i~~~~~~~ 293 (433)
T PRK10604 214 QLIDGIAHELRTPLVRLRYRLEMSDNLSAAESQALNRDIGQLEALIEELLTYARLDRPQNELHLSEPDLPAWLSTHLADI 293 (433)
T ss_pred HHHHHCCHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 99874024431689999999997049985789999999999999999999997636897878770236999999999999
Q ss_pred H--HCCCCCCCCCCCCC---CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHH
Q ss_conf 2--01223321100000---010001234445676646876532001111123557720479998789844024588740
Q gi|254780891|r 94 I--AVDKRVQVSWTGEK---IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 (215)
Q Consensus 94 ~--~~~~~~~~~~~~~~---~~~~~~~~qvl~NLi~NA~~a~~~gg~I~i~~~~~~~~~~i~V~D~G~Gi~~~e~~~~~~ 168 (215)
. .....+.++...+. ..++..+.|++.||+.||++|+ +|.|.|++..+++.+.|+|+|+|+||+ ++..+++|
T Consensus 294 ~~~~~~~~i~l~~~~~~~~~~~D~~~l~~~l~NLl~NA~kys--~~~v~v~~~~~~~~~~i~V~D~G~GI~-~e~~~~IF 370 (433)
T PRK10604 294 QAVTPEKTVRLKTPHQGDYGALDMRLMERVLDNLLNNALRYS--HSTVETSLLLDGDQATLIVEDDGPGIA-PEERERIF 370 (433)
T ss_pred HHHCCCCCEEEECCCCCCEEEECHHHHHHHHHHHHHHHHHCC--CCCEEEEEEEECCEEEEEEEECCCCCC-HHHHHHHC
T ss_conf 976559967997179886698789999999999999998718--997899999999999999997787889-89999865
Q ss_pred CCCCC------CCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEEC
Q ss_conf 54545------789987204999999999709879999877992699999419
Q gi|254780891|r 169 DGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 (215)
Q Consensus 169 ~~~~~------~~~~g~GlGl~~~~~i~~~~gG~i~v~~~~~~g~~f~~~l~~ 215 (215)
+||+. ++.+|+||||+||+.|++.|||+|++++.+++|++|+++||.
T Consensus 371 epFyR~d~sr~~~~gG~GLGLaIvk~Iv~~hgG~i~v~s~~~gGa~f~i~LP~ 423 (433)
T PRK10604 371 EPFVRLDPSRDRATGGCGLGLAIVHSIALAMGGSVNCDTSELGGARFSFSWPV 423 (433)
T ss_pred CCCEECCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCEEEEEEEECC
T ss_conf 79452888889999961388999999999819989999669984799999779
No 16
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=100.00 E-value=6.1e-36 Score=248.17 Aligned_cols=197 Identities=13% Similarity=0.072 Sum_probs=143.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHH----HHHHHHHHHCCCCCCCCCCCCCCCCHHHH
Q ss_conf 99997745454227999999999996144301---478988899999----99986311001122320000000001344
Q gi|254780891|r 16 ALLCSRICHDIISPIGAIHNSLELLDEVGIED---EVMQLIRLSSMS----AIIRLKFMRLAFGYTGSVDSLIGLGDIEQ 88 (215)
Q Consensus 16 allas~IaHdlrtPL~~I~~~~elL~~~~~~~---~~~~~i~~~~~~----~~~l~~~~r~~~~~~~~~~~~~~~~~~~~ 88 (215)
+.+.|++||||||||++|.|++++|.+....+ ++++.|..+++. ++++++|.+...+.......++++.++.+
T Consensus 294 s~FLAnmSHEiRTPLn~IiG~~~ll~~~~l~~~q~~~l~~i~~s~~~Ll~lIndiLD~SkiEag~l~le~~~f~l~~~~~ 373 (920)
T PRK11107 294 SEFLANMSHELRTPLNGVIGFTRQTLKTPLTPTQRDYLQTIERSANNLLAIINDILDFSKLEAGKLILENIPFSLRETLD 373 (920)
T ss_pred HHHHHHCHHHHCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHH
T ss_conf 99999664865421999999999985699999999999999999999999999999999984598367401678999999
Q ss_pred HHHHHH---HCCCCCCC--CCCCC----CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC--C-C--CCEEEEEEEC
Q ss_conf 444322---01223321--10000----00100012344456766468765320011111235--5-7--7204799987
Q gi|254780891|r 89 VIEDFI---AVDKRVQV--SWTGE----KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQD--S-K--NENIFSLKIN 154 (215)
Q Consensus 89 ~~~~~~---~~~~~~~~--~~~~~----~~~~~~~~~qvl~NLi~NA~~a~~~gg~I~i~~~~--~-~--~~~~i~V~D~ 154 (215)
-+...+ ...+.+++ ..+.. ...++.++.|++.||+.||+||++.| .|.|++.. . + ..+.|+|+|+
T Consensus 374 ~v~~~~~~~a~~k~l~l~~~~~~~~p~~v~gD~~Rl~QIl~NLl~NAiKfT~~G-~I~v~v~~~~~~~~~~~l~~~V~DT 452 (920)
T PRK11107 374 EVVTLLAHSAHEKGLELTLNIDPDVPDNVIGDPLRLQQIITNLVGNAIKFTESG-NIDILVELRALSDEKVQLEVQIRDT 452 (920)
T ss_pred HHHHHHHHHHHHCCCEEEEEECCCCCCCEEECHHHHHHHHHHHHHHHHHCCCCC-CEEEEEEEEECCCCEEEEEEEEEEE
T ss_conf 999999999997398799997899973065389999999999999999718899-3799999996479848999999997
Q ss_pred CCCCCCHHHHHHHHCCCC------CCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEE
Q ss_conf 898440245887405454------578998720499999999970987999987799269999941
Q gi|254780891|r 155 GNLARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 (215)
Q Consensus 155 G~Gi~~~e~~~~~~~~~~------~~~~~g~GlGl~~~~~i~~~~gG~i~v~~~~~~g~~f~~~l~ 214 (215)
|.||+ ++...++|++|. +++.+|+||||+||+++++.|||+|+|+|.+|.|++|+++||
T Consensus 453 GiGI~-~~~~~~iF~~F~q~d~s~~r~~gGtGLGLaI~k~Lv~~mgG~I~v~S~~g~GS~F~Ftlp 517 (920)
T PRK11107 453 GIGIS-ERQQSQLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHLP 517 (920)
T ss_pred CCCCC-HHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCEEEEEEEE
T ss_conf 05869-999997854201567654456798774299999999980991799954899748999998
No 17
>PRK10755 sensor protein BasS/PmrB; Provisional
Probab=100.00 E-value=7.2e-36 Score=247.72 Aligned_cols=197 Identities=14% Similarity=0.160 Sum_probs=142.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC-CCHHHHHH---
Q ss_conf 999774545422799999999999614430--147898889999999986311001122320000000-00134444---
Q gi|254780891|r 17 LLCSRICHDIISPIGAIHNSLELLDEVGIE--DEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIG-LGDIEQVI--- 90 (215)
Q Consensus 17 llas~IaHdlrtPL~~I~~~~elL~~~~~~--~~~~~~i~~~~~~~~~l~~~~r~~~~~~~~~~~~~~-~~~~~~~~--- 90 (215)
.+.|.+||||||||++|++++|++++.... +...+.+++....+++++.+.+.............. ..++...+
T Consensus 145 ~Fia~~SHELRTPLt~I~~~lEll~~~~~~~~~~~~~~i~rl~~li~~LL~Lar~~~~~~~~~~~~~~ll~~li~~~~~~ 224 (355)
T PRK10755 145 LFTADVAHELRTPLAGVRLHLELLAKTHHIDVAPLIARLDQMMHSVSQLLQLARAGQSFSSGNYQTVKLLEDVILPSYDE 224 (355)
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 99997577740389999999999737575319999999999999999999998588864345442132599999999999
Q ss_pred -HHHHH-CCCCCCCCC---CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHH
Q ss_conf -43220-122332110---0000010001234445676646876532001111123557720479998789844024588
Q gi|254780891|r 91 -EDFIA-VDKRVQVSW---TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 (215)
Q Consensus 91 -~~~~~-~~~~~~~~~---~~~~~~~~~~~~qvl~NLi~NA~~a~~~gg~I~i~~~~~~~~~~i~V~D~G~Gi~~~e~~~ 165 (215)
..... .+..+.+.. +.....++..+.|++.||+.||++|+|.|+.|+|.+..+ +.+.+.|+|+||||+ ++...
T Consensus 225 l~~~~~~~~~~l~~~~~~~~~~v~~D~~lL~~vl~NLi~NAikys~~g~~I~I~l~~~-~~~~i~V~D~G~GI~-~e~~~ 302 (355)
T PRK10755 225 LSTMLEQRQQTLLLPESAADITVQGDATLLRLLLRNLVENAHRYSPEGSNITIKLQED-GGAVMAVEDEGPGID-ESKCG 302 (355)
T ss_pred HHHHHHHCCCEEEEECCCCCEEEEECHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEC-CCEEEEEEECCCCCC-HHHHH
T ss_conf 9999997599599965887718996899999999999998997489997699999977-988999998799989-79998
Q ss_pred HHHCCCCCC--CCCCCCHHHHHHHHHHHHCCCEEEEEEECC-CCEEEEEEEEC
Q ss_conf 740545457--899872049999999997098799998779-92699999419
Q gi|254780891|r 166 QIVDGNVES--TIDSHDIQFYYVILLAHENKIRLLPEIIDD-HNVVLSALLEK 215 (215)
Q Consensus 166 ~~~~~~~~~--~~~g~GlGl~~~~~i~~~~gG~i~v~~~~~-~g~~f~~~l~~ 215 (215)
++|++|+.. ..+|+||||+||+.|++.|||+|+++|.++ +|++|++.|||
T Consensus 303 ~iFerFyR~d~~~gGsGLGLaIvk~Iv~~HgG~I~l~s~~~ggGt~~~v~LPk 355 (355)
T PRK10755 303 ELSKAFVRMDSRYGGIGLGLSIVSRITQLHHGQFFLQNRQERSGTRAWVWLKK 355 (355)
T ss_pred HHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCEEEEEEEECC
T ss_conf 85588613899999875899999999999199899998798987899999479
No 18
>PRK09470 cpxA two-component sensor protein; Provisional
Probab=100.00 E-value=1.2e-35 Score=246.33 Aligned_cols=193 Identities=16% Similarity=0.094 Sum_probs=141.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH----HHHCCCCCCCCCCCCCCCCHH-HHHHHH
Q ss_conf 997745454227999999999996144301478988899999999863----110011223200000000013-444443
Q gi|254780891|r 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLK----FMRLAFGYTGSVDSLIGLGDI-EQVIED 92 (215)
Q Consensus 18 las~IaHdlrtPL~~I~~~~elL~~~~~~~~~~~~i~~~~~~~~~l~~----~~r~~~~~~~~~~~~~~~~~~-~~~~~~ 92 (215)
+.|.||||||||||+|+++++++.+...+.+.++.|...++++..+++ +.|...+. ..........++ .+++.+
T Consensus 246 f~advSHELRTPLt~i~~~~~ll~~~~~~~~~l~~i~~e~~rl~~li~~lL~lsr~~~~~-~~~~e~~~l~~l~~~v~~~ 324 (461)
T PRK09470 246 LLSDISHELRTPLTRLQLATALLRRRQGESKELERIETEAQRLDSMINDLLVLSRNQVKN-HLVRETIKANSLWSEVLED 324 (461)
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCCCEECHHHHHHHHHHH
T ss_conf 998645553278999999999864044785999999999999999999999997620546-5556515399999999999
Q ss_pred HH----HCCCCCCCCCCCC---CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHH
Q ss_conf 22----0122332110000---0010001234445676646876532001111123557720479998789844024588
Q gi|254780891|r 93 FI----AVDKRVQVSWTGE---KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 (215)
Q Consensus 93 ~~----~~~~~~~~~~~~~---~~~~~~~~~qvl~NLi~NA~~a~~~gg~I~i~~~~~~~~~~i~V~D~G~Gi~~~e~~~ 165 (215)
+. ..+..+.+...++ ...++..+.|++.||+.||++|++. .|+|++..+++.+.|+|+|+|+||+ ++..+
T Consensus 325 ~~~~a~~~~~~l~~~~~~~~~~v~~d~~~l~~vl~NLl~NAikys~~--~i~v~~~~~~~~~~i~V~D~G~GI~-~e~l~ 401 (461)
T PRK09470 325 AAFEAEQMGKSLTVNQPPGPWPINGNPNALESALENIVRNALRYSHT--KIEVGFSVDKDGLTITVDDDGPGVP-EEERE 401 (461)
T ss_pred HHHHHHHCCCEEEEEECCCCEEEEECHHHHHHHHHHHHHHHHHHCCC--CEEEEEEEECCEEEEEEEECCCCCC-HHHHH
T ss_conf 99999975976999727875489978999999999999999974899--5899999999999999997799989-99998
Q ss_pred HHHCCCCCC------CCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEE
Q ss_conf 740545457------8998720499999999970987999987799269999941
Q gi|254780891|r 166 QIVDGNVES------TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 (215)
Q Consensus 166 ~~~~~~~~~------~~~g~GlGl~~~~~i~~~~gG~i~v~~~~~~g~~f~~~l~ 214 (215)
++|+||+.. ..+|+||||+||+.+++.|||+|++++.+++|++|+++||
T Consensus 402 ~iFepFyR~d~sr~~~~gG~GLGLaIv~~iv~~hgG~i~~~~~~~~G~~~~i~LP 456 (461)
T PRK09470 402 QIFRPFYRVDEARDRESGGTGLGLAIVENAIQQHRGWVKAEDSPLGGLRLTIWLP 456 (461)
T ss_pred HHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCEEEEEEEEE
T ss_conf 7627972289888899997138899999999982998999977998569999965
No 19
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=100.00 E-value=2.4e-35 Score=244.41 Aligned_cols=197 Identities=14% Similarity=0.124 Sum_probs=147.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH---HHHHHHHHHHHH----HHHHHHHHCCCCCCCCCCCCCCCCHHHH
Q ss_conf 999977454542279999999999961443014---789888999999----9986311001122320000000001344
Q gi|254780891|r 16 ALLCSRICHDIISPIGAIHNSLELLDEVGIEDE---VMQLIRLSSMSA----IIRLKFMRLAFGYTGSVDSLIGLGDIEQ 88 (215)
Q Consensus 16 allas~IaHdlrtPL~~I~~~~elL~~~~~~~~---~~~~i~~~~~~~----~~l~~~~r~~~~~~~~~~~~~~~~~~~~ 88 (215)
+.+-|.+||||||||++|.|++++|.+...+++ +++.|..+++.+ ++++++.+...+.......++++.++.+
T Consensus 284 S~FLAnMSHEIRTPLNgIlG~seLL~~t~L~~eQre~l~~I~~S~~~Ll~LINDILD~SKIEaGkl~l~~~~fdl~~ll~ 363 (779)
T PRK11091 284 TTFISTISHELRTPLNGIVGLSRMLLDTELTAEQEKYLKTIHVSAITLGNIFNDIIDMDKMDRRKLQLDNQPVDFTDFLA 363 (779)
T ss_pred HHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECHHHHHH
T ss_conf 99998726875653999999999980799999999999999999999999999999999996699678877675999999
Q ss_pred HHHHHH-----HCCCCCCCCCCCC----CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-CCCEEEEEEECCCCC
Q ss_conf 444322-----0122332110000----001000123444567664687653200111112355-772047999878984
Q gi|254780891|r 89 VIEDFI-----AVDKRVQVSWTGE----KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDS-KNENIFSLKINGNLA 158 (215)
Q Consensus 89 ~~~~~~-----~~~~~~~~~~~~~----~~~~~~~~~qvl~NLi~NA~~a~~~gg~I~i~~~~~-~~~~~i~V~D~G~Gi 158 (215)
-+.... .++..+.+..+.+ ...++.++.|++.||+.||+||++.| .|.+++..+ ++.+.|+|+|||+||
T Consensus 364 ~v~~~~~~~A~~Kgl~l~~~~~~~lP~~v~gD~~RLrQIL~NLlsNAIKFT~~G-~V~l~v~~~~~~~l~f~V~DTGiGI 442 (779)
T PRK11091 364 DLENLSGLQAEQKGLRFDLEPLLPLPHKVITDGTRLRQILWNLISNAVKFTQQG-QVTVRVRYEDGDMLHFEVEDSGIGI 442 (779)
T ss_pred HHHHHHHHHHHHCCCEEEEEECCCCCCEEECCHHHHHHHHHHHHHHHHHCCCCC-CEEEEEEECCCCEEEEEEEECCCCC
T ss_conf 999999999997498899997899986286389999999999999997738999-7799999827988999999579999
Q ss_pred CCHHHHHHHHCCCCC------CC-CCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEE
Q ss_conf 402458874054545------78-998720499999999970987999987799269999941
Q gi|254780891|r 159 RFPEKFTQIVDGNVE------ST-IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 (215)
Q Consensus 159 ~~~e~~~~~~~~~~~------~~-~~g~GlGl~~~~~i~~~~gG~i~v~~~~~~g~~f~~~l~ 214 (215)
+ ++...++|++|.. ++ ..|+||||+||+.+++.|||+|+|+|.+|.|++|+++||
T Consensus 443 ~-~e~l~~IF~~F~Q~~~s~~~r~~~GTGLGLaI~k~LvelMGG~I~V~S~~G~GStFt~~Lp 504 (779)
T PRK11091 443 P-EDELDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAQNMGGDITVTSEEGKGSTFTLTIH 504 (779)
T ss_pred C-HHHHHHHHCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCEEEEEEE
T ss_conf 9-9999987057560667877767788760799999999984997999955998717999997
No 20
>PRK09467 envZ osmolarity sensor protein; Provisional
Probab=100.00 E-value=1.3e-35 Score=246.20 Aligned_cols=192 Identities=14% Similarity=0.136 Sum_probs=137.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHH-HHHHHHH
Q ss_conf 99977454542279999999999961443--01478988899999999863110011223200000000013-4444432
Q gi|254780891|r 17 LLCSRICHDIISPIGAIHNSLELLDEVGI--EDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDI-EQVIEDF 93 (215)
Q Consensus 17 llas~IaHdlrtPL~~I~~~~elL~~~~~--~~~~~~~i~~~~~~~~~l~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~ 93 (215)
.|.|+||||||||||.|++++|+|.+++. .+.....++++.+.++++++++|.... ......++.++ .+++...
T Consensus 233 ~~la~vSHeLRTPLT~irl~~e~l~~~~~~~~~~i~~~i~~m~~li~~~L~~~r~~~~---~~~~~~dl~~l~~~~~~~~ 309 (437)
T PRK09467 233 LLMAGVSHDLRTPLTRIRLATEMMSEEDGYLAESINKDIEECNAIIEQFIDYLRTDQE---MPMEMADLNALLGEVIAAE 309 (437)
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---CCCCCCCHHHHHHHHHHHH
T ss_conf 9997534443278999999987467531899999999999999999999999862155---6675115999999999987
Q ss_pred HHCCCCCCCCCCCC---CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHCC
Q ss_conf 20122332110000---001000123444567664687653200111112355772047999878984402458874054
Q gi|254780891|r 94 IAVDKRVQVSWTGE---KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 (215)
Q Consensus 94 ~~~~~~~~~~~~~~---~~~~~~~~~qvl~NLi~NA~~a~~~gg~I~i~~~~~~~~~~i~V~D~G~Gi~~~e~~~~~~~~ 170 (215)
......+++..... ....+..+.|++.||+.||++|+ +|.|.|++..+++.+.|+|.|+||||+ ++..+++|+|
T Consensus 310 ~~~~~~i~~~~~~~~~~v~~d~~~l~r~l~NLi~NA~ky~--~~~i~V~~~~~~~~~~i~V~D~GpGI~-~e~l~~if~p 386 (437)
T PRK09467 310 SGYEREIETALYPGPIEVPMNPIAIKRALANLVVNAARYG--NGWIKVSSGTEGNRAWFQVEDNGPGIP-EEQIKHLFQP 386 (437)
T ss_pred HCCCCEEEEECCCCCEEEEECHHHHHHHHHHHHHHHHHCC--CCEEEEEEEEECCEEEEEEEECCCCCC-HHHHHHHCCC
T ss_conf 5549838996288764898579999999999999887607--983999999868999999997599999-8999876168
Q ss_pred CCC----CCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEE
Q ss_conf 545----78998720499999999970987999987799269999941
Q gi|254780891|r 171 NVE----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 (215)
Q Consensus 171 ~~~----~~~~g~GlGl~~~~~i~~~~gG~i~v~~~~~~g~~f~~~l~ 214 (215)
|+. ++.+|+||||+||+.|++.|||+|.+++.+++|+.|++.||
T Consensus 387 F~R~d~sR~~~GsGLGLaIv~~Iv~~HgG~i~l~~~~~gGl~~~i~lP 434 (437)
T PRK09467 387 FTRGDSARGSSGTGLGLAIVKRIVDQHQGKVELGNREEGGLSARAWLP 434 (437)
T ss_pred CCCCCCCCCCCCEEHHHHHHHHHHHHCCCEEEEEECCCCCEEEEEEEC
T ss_conf 521888999997728899999999986998999977999459999971
No 21
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=100.00 E-value=1.4e-35 Score=245.82 Aligned_cols=208 Identities=17% Similarity=0.134 Sum_probs=151.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHHHHH----HHHHHHCCCCCCCC
Q ss_conf 999676879999977454542279999999999961443------01478988899999999----86311001122320
Q gi|254780891|r 7 FNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGI------EDEVMQLIRLSSMSAII----RLKFMRLAFGYTGS 76 (215)
Q Consensus 7 ~~~~~~~laallas~IaHdlrtPL~~I~~~~elL~~~~~------~~~~~~~i~~~~~~~~~----l~~~~r~~~~~~~~ 76 (215)
+..+..++-+-|-+.|||||||||++|.|.++.|.+... ..+.+..|.+.+.++.+ +++..|...+....
T Consensus 652 l~~e~E~lRsaLL~sISHDLRTPLt~i~Gaa~tL~~~~~~l~~~~~aeLl~~I~ees~~L~rlV~NLLdmTRi~sG~~~l 731 (890)
T COG2205 652 LAAERERLRSALLASISHDLRTPLTAIMGAAETLLLDGEALSPEDRAELLSSIREESERLTRLVTNLLDMTRLQSGGVNL 731 (890)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 99999999999998741024672898861488864234015937699999999999999999999877677771378641
Q ss_pred CCCCCCCCHHHHHHHHHHH---CCCCCCCCCCCCCCC--CC-HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEE
Q ss_conf 0000000013444443220---122332110000001--00-01234445676646876532001111123557720479
Q gi|254780891|r 77 VDSLIGLGDIEQVIEDFIA---VDKRVQVSWTGEKID--LS-RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFS 150 (215)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~--~~-~~~~qvl~NLi~NA~~a~~~gg~I~i~~~~~~~~~~i~ 150 (215)
...+....|+..-+..-.. ...++.++.+.+... ++ .-+.||+.||+.||.+|+|.+.+|.|.+..+.+.+.|+
T Consensus 732 ~~~~~~veEvVg~Al~r~~k~~~~~~i~v~~~~dl~li~~D~~LieQVLiNLleNA~Kyap~~s~I~I~~~~~~~~v~~~ 811 (890)
T COG2205 732 KLDWVLVEEVVGEALQRLRKRFTGHKIVVSVPVDLPLIHVDSPLIEQVLINLLENALKYAPPGSEIRINAGVERENVVFS 811 (890)
T ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCEEECCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCEEEEE
T ss_conf 44520399999999998663047835899558887167647889999999999878742899976999999824569999
Q ss_pred EEECCCCCCCHHHHHHHHCCCCCC----CCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEEC
Q ss_conf 998789844024588740545457----89987204999999999709879999877992699999419
Q gi|254780891|r 151 LKINGNLARFPEKFTQIVDGNVES----TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 (215)
Q Consensus 151 V~D~G~Gi~~~e~~~~~~~~~~~~----~~~g~GlGl~~~~~i~~~~gG~i~v~~~~~~g~~f~~~l~~ 215 (215)
|.|+||||+ ++..+++|++|+.. ...|.|||||+|+.|++.|||+|++++.+++|++|++.||+
T Consensus 812 V~DeGpGIP-~~~~~~IFD~F~r~~~~~~~~G~GLGLsIc~~iv~ahgG~I~a~~~~~gGa~f~~~LP~ 879 (890)
T COG2205 812 VIDEGPGIP-EGELERIFDKFYRGNKESATRGVGLGLAICRGIVEAHGGTISAENNPGGGAIFVFTLPV 879 (890)
T ss_pred EEECCCCCC-HHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCEEEEEEEEC
T ss_conf 971899988-56788764654148887788876622999999999748868987769993589999406
No 22
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS; InterPro: IPR014302 This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (IPR003594 from INTERPRO), HAMP (IPR003660 from INTERPRO), phosphoacceptor (IPR003661 from INTERPRO), and phosphotransfer (IPR008207 from INTERPRO) domains and a response regulator receiver domain (IPR001789 from INTERPRO)..
Probab=100.00 E-value=5.1e-36 Score=248.70 Aligned_cols=210 Identities=17% Similarity=0.170 Sum_probs=153.8
Q ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHH----HHHHHHHHCCC
Q ss_conf 15999996768799----999774545422799999999999614430---14789888999999----99863110011
Q gi|254780891|r 3 KNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIE---DEVMQLIRLSSMSA----IIRLKFMRLAF 71 (215)
Q Consensus 3 ~~~~~~~~~~~laa----llas~IaHdlrtPL~~I~~~~elL~~~~~~---~~~~~~i~~~~~~~----~~l~~~~r~~~ 71 (215)
++++...+..|-|. -+-|.+||||||||.+|.|.++||.+.... ..|++.|.++-+.+ ++++||++.+.
T Consensus 489 ~~H~kAR~~AE~AnrAKS~FLAtMSHEIRTPlNG~LGT~~LL~d~~L~~~Q~~yl~~In~SGe~LL~iLNDILDYSkIEa 568 (1052)
T TIGR02956 489 LNHAKARAEAEEANRAKSAFLATMSHEIRTPLNGILGTLELLGDTGLTSQQQQYLQVINRSGESLLDILNDILDYSKIEA 568 (1052)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 87999999999974887688741351132011368999975058998888999999998622789999846754677610
Q ss_pred C--CCCCCCCCCCCCHHHHHHHHHHHC---CCCCCCCCC----CCCC--CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 2--232000000000134444432201---223321100----0000--1000123444567664687653200111112
Q gi|254780891|r 72 G--YTGSVDSLIGLGDIEQVIEDFIAV---DKRVQVSWT----GEKI--DLSRERAKILLNLFMVAHASLPRGGKVTISV 140 (215)
Q Consensus 72 ~--~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~----~~~~--~~~~~~~qvl~NLi~NA~~a~~~gg~I~i~~ 140 (215)
| .-.-.+.++++..+..-+-..+.. .+.+.+..+ .|.. .+..+++||+.||+.||+|||..| .|+|++
T Consensus 569 GGthl~i~~~~fd~~~L~~dv~~Lm~sRA~~Kg~~L~~~~~~~~~~~~~gD~~riRQvL~NLvgNaIKFT~~G-sv~l~~ 647 (1052)
T TIGR02956 569 GGTHLSISPRPFDLNKLLEDVHHLMESRAQEKGIQLILNIDEQLPNWWQGDLRRIRQVLINLVGNAIKFTDRG-SVVLRV 647 (1052)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHCCCCHHHHHHHHHHHCCCEECCCC-EEEEEE
T ss_conf 8746534556778888999999999987740372567427654278875366134476765441320043452-699998
Q ss_pred CCCCCC------EEEEEEECCCCCCCHHHHHHHHCCCCC-----CCCCCCCHHHHHHHHHHHHCCCE---EEEEEECCCC
Q ss_conf 355772------047999878984402458874054545-----78998720499999999970987---9999877992
Q gi|254780891|r 141 QDSKNE------NIFSLKINGNLARFPEKFTQIVDGNVE-----STIDSHDIQFYYVILLAHENKIR---LLPEIIDDHN 206 (215)
Q Consensus 141 ~~~~~~------~~i~V~D~G~Gi~~~e~~~~~~~~~~~-----~~~~g~GlGl~~~~~i~~~~gG~---i~v~~~~~~g 206 (215)
...++. +.|.|+|||.||. ++..+.+|+||.. +...|||||||||+++|+.++|+ |+|+|.++.|
T Consensus 648 ~l~~~~~~gdsel~F~V~DtG~GIa-e~~~~~lF~aF~Qa~eg~~~~gGTGLGLAIs~~Lv~AM~G~GrGl~v~S~~~~G 726 (1052)
T TIGR02956 648 SLNDDSSSGDSELLFEVEDTGVGIA-EEEQATLFDAFTQADEGRRKSGGTGLGLAISRRLVEAMDGEGRGLGVESELGQG 726 (1052)
T ss_pred EECCCCCCCCCEEEEEEEECCCCCC-HHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCC
T ss_conf 8558889866347888862477998-799985433101210137313776506899999999708887650166645875
Q ss_pred EEEEEEEE
Q ss_conf 69999941
Q gi|254780891|r 207 VVLSALLE 214 (215)
Q Consensus 207 ~~f~~~l~ 214 (215)
++|+++||
T Consensus 727 ScF~F~lp 734 (1052)
T TIGR02956 727 SCFWFTLP 734 (1052)
T ss_pred CEEEEECC
T ss_conf 02212423
No 23
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=100.00 E-value=5.3e-35 Score=242.21 Aligned_cols=197 Identities=16% Similarity=0.114 Sum_probs=145.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH----HHHHHHHHHHH----HHHHHHHHHCCCCCCCCCCCCCCCCHHHH
Q ss_conf 99977454542279999999999961443014----78988899999----99986311001122320000000001344
Q gi|254780891|r 17 LLCSRICHDIISPIGAIHNSLELLDEVGIEDE----VMQLIRLSSMS----AIIRLKFMRLAFGYTGSVDSLIGLGDIEQ 88 (215)
Q Consensus 17 llas~IaHdlrtPL~~I~~~~elL~~~~~~~~----~~~~i~~~~~~----~~~l~~~~r~~~~~~~~~~~~~~~~~~~~ 88 (215)
.+-|.+||||||||++|.|++|+|.+....++ .++.+..+++. +++++++.+...+.....+..+++.++.+
T Consensus 714 ~FLA~MSHEIRTPLn~IiG~~eLL~~~~l~~~q~~~~l~~~~~Sa~~LL~LInDILD~SKIEaG~l~l~~~~~~l~~li~ 793 (1197)
T PRK09959 714 QFLATMSHEIRTPISSIMGFLELLSGSGLSKEQRVEAISLAYATGQSLLGLIGEILDVDKIESGNYQLQPQWVDIPTLVQ 793 (1197)
T ss_pred HHHHHCCHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECHHHHHH
T ss_conf 88874735316568999999999846899989999999999999999999888889998985388621452017999999
Q ss_pred HHHHHH-----HCCCCCCCCCCCCC----CCCCHHHHHHHHHHHHHHHHHHHHHC-CCCCCCCC---CCCCEEEEEEECC
Q ss_conf 444322-----01223321100000----01000123444567664687653200-11111235---5772047999878
Q gi|254780891|r 89 VIEDFI-----AVDKRVQVSWTGEK----IDLSRERAKILLNLFMVAHASLPRGG-KVTISVQD---SKNENIFSLKING 155 (215)
Q Consensus 89 ~~~~~~-----~~~~~~~~~~~~~~----~~~~~~~~qvl~NLi~NA~~a~~~gg-~I~i~~~~---~~~~~~i~V~D~G 155 (215)
-+...+ .++..+.++...+. ..++.++.|++.||+.||+||++.|+ .|.++... ....+.|+|+|+|
T Consensus 794 ~v~~~~~~~A~~K~l~l~~~~~~p~~~~v~~D~~Rl~QIL~NLlsNAIKFT~~G~V~i~~~~~~~~~~~~~l~~~V~DTG 873 (1197)
T PRK09959 794 NTCHSFGAIAASKSIALSCSSTFPEHYLVKIDPQAFKQVLSNLLSNALKFTTEGAVKITTSLGHIDDNHAVIKMTIMDSG 873 (1197)
T ss_pred HHHHHHHHHHHHCCCEEEEECCCCCCCEECCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEECCCCEEEEEEEEEECC
T ss_conf 99999999999679689995589875135267889999999998753746879789999998651798069999999778
Q ss_pred CCCCCHHHHHHHHCCCCC----CCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEE
Q ss_conf 984402458874054545----78998720499999999970987999987799269999941
Q gi|254780891|r 156 NLARFPEKFTQIVDGNVE----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 (215)
Q Consensus 156 ~Gi~~~e~~~~~~~~~~~----~~~~g~GlGl~~~~~i~~~~gG~i~v~~~~~~g~~f~~~l~ 214 (215)
.||+ ++...++|+||.. ++.+|+||||+||+.+++.+||+|+++|.+|.|++|+++||
T Consensus 874 iGI~-~~~~~~iF~pF~Q~s~~r~~~GTGLGLaI~k~LvelMgG~I~v~S~~G~GS~F~~~lp 935 (1197)
T PRK09959 874 SGLS-QEEQQQLFKRYSQTSAGRQQTGSGLGLMICKELIKNMQGDLSLESHPGIGTTFTITIP 935 (1197)
T ss_pred CCCC-HHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEECCCCCEEEEEEEE
T ss_conf 7889-8899753678624778878898483599999999987992899935999449999997
No 24
>PRK10337 sensor protein QseC; Provisional
Probab=100.00 E-value=5.9e-34 Score=235.59 Aligned_cols=192 Identities=16% Similarity=0.135 Sum_probs=133.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCC----HHHHHHHHHHHHHHHHHH----HHHHCCCCCCCCCCCCCCCCHHH-
Q ss_conf 999774545422799999999999614430----147898889999999986----31100112232000000000134-
Q gi|254780891|r 17 LLCSRICHDIISPIGAIHNSLELLDEVGIE----DEVMQLIRLSSMSAIIRL----KFMRLAFGYTGSVDSLIGLGDIE- 87 (215)
Q Consensus 17 llas~IaHdlrtPL~~I~~~~elL~~~~~~----~~~~~~i~~~~~~~~~l~----~~~r~~~~~~~~~~~~~~~~~~~- 87 (215)
-+++.+||||||||++|++++|++.....+ ++.++.+.+.++++.+++ .+.|...+..........+.++.
T Consensus 236 ~F~adaAHELRTPLt~i~~~~e~~~~~~~~~~~~~~~l~~i~~~~~rl~~lv~~LL~Lar~d~~~~~~~~~~v~l~~l~~ 315 (446)
T PRK10337 236 RFTSDAAHELRSPLTALKVQTEVAQLSDDDPQARKKALLQLHSGIDRATRLVDQLLTLSRLDSLDNLQDVAEIPLEDLLQ 315 (446)
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECHHHHHH
T ss_conf 99997888751689999999999842799989999999999999999999999999987754465656781752999999
Q ss_pred HHHHHH----HHCCCCCCCCCCCCCC---CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCC
Q ss_conf 444432----2012233211000000---100012344456766468765320011111235577204799987898440
Q gi|254780891|r 88 QVIEDF----IAVDKRVQVSWTGEKI---DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 (215)
Q Consensus 88 ~~~~~~----~~~~~~~~~~~~~~~~---~~~~~~~qvl~NLi~NA~~a~~~gg~I~i~~~~~~~~~~i~V~D~G~Gi~~ 160 (215)
+.+.+. ...+..+.++.+.+.. ..+..+.+++.||+.||++|+|+||.|+|++... .+.|+|+||||+
T Consensus 316 ~~v~~~~~~a~~~~i~l~~~~~~~~~~~~~d~~ll~~~l~NLl~NAikytp~g~~I~v~~~~~----~l~V~D~G~GIp- 390 (446)
T PRK10337 316 SAVMDIYHTAQQAKIDVRLTLNAHGIKRTGQPLLLSLLVRNLLDNAVRYSPQGSVVDVTLNAR----NFTVRDNGPGVT- 390 (446)
T ss_pred HHHHHHHHHHHHCCCEEEEECCCCCEEEECCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECC----EEEEEECCCCCC-
T ss_conf 999999999997597799962887706716899999999999999997489997699999807----799997699999-
Q ss_pred HHHHHHHHCCCCC---CCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEE
Q ss_conf 2458874054545---7899872049999999997098799998779926999994
Q gi|254780891|r 161 PEKFTQIVDGNVE---STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 (215)
Q Consensus 161 ~e~~~~~~~~~~~---~~~~g~GlGl~~~~~i~~~~gG~i~v~~~~~~g~~f~~~l 213 (215)
++..+++|++|+. +...|+||||+||+.||+.|||+|++++.+++|++|+++.
T Consensus 391 ~e~~~~iFeRFyR~~~~~~~GsGLGLaIV~~I~~~hgG~i~l~~~~~GG~~~~vt~ 446 (446)
T PRK10337 391 PEALARIGERFYRPPGQTATGSGLGLSIVQRIAKLHGMNVSFGNAEEGGFEAKVSW 446 (446)
T ss_pred HHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCEEEEEECCCCEEEEEEEC
T ss_conf 99998742797069999999826749999999998199899997898927999969
No 25
>PRK10815 sensor protein PhoQ; Provisional
Probab=100.00 E-value=7.5e-34 Score=234.90 Aligned_cols=195 Identities=10% Similarity=0.058 Sum_probs=134.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH-HHHH----HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC----CHHHH
Q ss_conf 9977454542279999999999961443014-7898----8899999999863110011223200000000----01344
Q gi|254780891|r 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDE-VMQL----IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGL----GDIEQ 88 (215)
Q Consensus 18 las~IaHdlrtPL~~I~~~~elL~~~~~~~~-~~~~----i~~~~~~~~~l~~~~r~~~~~~~~~~~~~~~----~~~~~ 88 (215)
+.|.+||||||||++|+++++.+.++....+ .... +++..+.+..++.+++............... .++..
T Consensus 269 F~adaSHELRTPLa~l~~~le~L~~~~~~~~~~~~~~le~i~Rl~~li~~lL~~a~~~~~~~~~~~e~~~l~~ll~~l~~ 348 (484)
T PRK10815 269 TLTDLTHSLKTPLAVLQSTLRSLRTEKMSVSDAEPVMLEQISRISQQIGYYLHRASMRGEGTLLSRELHPVAPLLDNLTS 348 (484)
T ss_pred HHHCCCHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 98544364345699999999997469988789999999999999999999999987038986302555669999999999
Q ss_pred HHHHH-HHCCCCCCCCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHH
Q ss_conf 44432-201223321100000--010001234445676646876532001111123557720479998789844024588
Q gi|254780891|r 89 VIEDF-IAVDKRVQVSWTGEK--IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 (215)
Q Consensus 89 ~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~qvl~NLi~NA~~a~~~gg~I~i~~~~~~~~~~i~V~D~G~Gi~~~e~~~ 165 (215)
.+... ..++..+.++.+++. ...+..+.|++.||+.||++|++.+ |.|++...++.+.|.|+|+||||+ ++..+
T Consensus 349 ~l~~~~~~k~i~l~~~~~~~~~~~gd~~~l~~~l~NLldNAikys~~~--v~I~~~~~~~~~~I~V~D~GpGIp-~e~~~ 425 (484)
T PRK10815 349 ALNKVYQRKGVNISLDISPEISFVGEQNDFMEVMGNVLDNACKYCLEF--VEISARQTDEHLHIVVEDDGPGIP-ESKRE 425 (484)
T ss_pred HHHHHHHHCCCEEEEECCCCEEEECCHHHHHHHHHHHHHHHHHHCCCC--EEEEEEEECCEEEEEEEECCCCCC-HHHHH
T ss_conf 999999964977999648760795578999999999999999728886--799999969999999997399999-89998
Q ss_pred HHHCCCCCCC--CCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEEC
Q ss_conf 7405454578--9987204999999999709879999877992699999419
Q gi|254780891|r 166 QIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 (215)
Q Consensus 166 ~~~~~~~~~~--~~g~GlGl~~~~~i~~~~gG~i~v~~~~~~g~~f~~~l~~ 215 (215)
++|++|+..+ ..|+||||+||+.||+.|||+|++++.+++|++|++++||
T Consensus 426 ~IFeRF~R~d~~r~GsGLGLaIvk~Iv~~hgG~I~l~~s~~gG~~f~I~F~~ 477 (484)
T PRK10815 426 LIFDRGQRVDTLRPGQGVGLAVAREITEQYEGKIVASESPLGGARMEVIFGR 477 (484)
T ss_pred HHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCEEEEEEECC
T ss_conf 6246887799999985767999999999889989999569992489999738
No 26
>COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms]
Probab=100.00 E-value=1e-33 Score=234.09 Aligned_cols=214 Identities=14% Similarity=0.148 Sum_probs=163.7
Q ss_pred CCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH---HHCCCC---HHHHHHHHHHHHHHHHH----HHHHH
Q ss_conf 90159999967687999--99774545422799999999999---614430---14789888999999998----63110
Q gi|254780891|r 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL---DEVGIE---DEVMQLIRLSSMSAIIR----LKFMR 68 (215)
Q Consensus 1 ~~~~~~~~~~~~~laal--las~IaHdlrtPL~~I~~~~elL---~~~~~~---~~~~~~i~~~~~~~~~l----~~~~r 68 (215)
++++.+=..+.-|||.+ |+++||||||.||++|++|++.. -+.+.. .+.+..|...++++..+ ..|.|
T Consensus 368 LR~~QdeLvQA~kLA~LGQmSA~iaHElNQPLaaiRt~adna~~lLergr~e~a~~Nl~~I~~LteRma~It~~Lk~FAr 447 (603)
T COG4191 368 LRRAQDELVQAGKLAALGQMSAGIAHELNQPLAAIRTYADNARLLLERGRTEEARENLERISALTERMAAITAHLKSFAR 447 (603)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 99878999987778998888888788743708999867778999987588677776799999999999889999999833
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHC-CCCCCCCCCCCCC---CCCHHHHHHHHHHHHHHHHHHHH--HCCCCCCCCC
Q ss_conf 0112232000000000134444432201-2233211000000---10001234445676646876532--0011111235
Q gi|254780891|r 69 LAFGYTGSVDSLIGLGDIEQVIEDFIAV-DKRVQVSWTGEKI---DLSRERAKILLNLFMVAHASLPR--GGKVTISVQD 142 (215)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~---~~~~~~~qvl~NLi~NA~~a~~~--gg~I~i~~~~ 142 (215)
......+.......+.++..++..-+.. ...+......+.. ..+.++.||+.||+.||.+|+.. ...|.|.+..
T Consensus 448 k~~~a~~~v~l~~ai~~Al~ll~~R~~~~~~~l~~~~~~~~~~V~~~~iRLeQVLvNLl~NALDA~~~~~~~~i~i~~~~ 527 (603)
T COG4191 448 KSRDAAGPVSLREAIEGALELLRGRLRAAGVELELDLPDAPLWVMANEIRLEQVLVNLLQNALDAMAGQEDRRLSIRAQR 527 (603)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEE
T ss_conf 67666677657999999999988764136762650489877556413220999999999989998458878716999871
Q ss_pred CCCCEEEEEEECCCCCCCHHHHHHHHCCCCCCC--CCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEEC
Q ss_conf 577204799987898440245887405454578--9987204999999999709879999877992699999419
Q gi|254780891|r 143 SKNENIFSLKINGNLARFPEKFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 (215)
Q Consensus 143 ~~~~~~i~V~D~G~Gi~~~e~~~~~~~~~~~~~--~~g~GlGl~~~~~i~~~~gG~i~v~~~~~~g~~f~~~l~~ 215 (215)
+++.+.|+|+|+||||+ |+...++|+||+++| .+|-||||+|++.|++.+||+|.+.|.+++|++|++.|++
T Consensus 528 ~~~~v~l~VrDnGpGi~-~e~~~~lFePF~TtK~~~~GLGLGLaIS~~i~~d~GGsL~v~n~~~~Ga~F~i~L~~ 601 (603)
T COG4191 528 EGGQVVLTVRDNGPGIA-PEALPHLFEPFFTTKPVGKGLGLGLAISQNIARDLGGSLEVANHPEGGASFTIELRR 601 (603)
T ss_pred CCCEEEEEECCCCCCCC-HHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCEEEEECCCCCCEEEEEEEEC
T ss_conf 59869999826999989-789986137750367666775602898998999818807940278884489999615
No 27
>TIGR02916 PEP_his_kin putative PEP-CTERM system histidine kinase; InterPro: IPR014265 Proteins in this entry are putative periplasmic sensor signal transduction histidine kinases. They all contain a GAF domain that is present in phytochromes and cGMP-specific phosphodiesterases, and which has been experimentally proven to be involved in protein:protein interactions. They also contain a C-terminal histidine kinase domain, which is composed of a dimerisation sub-domain and an ATP/ADP-binding phosphotransfer, or catalytic, sub-domain. The proteins in this entry are found strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria, where members of IPR014264 from INTERPRO and IPR014266 from INTERPRO also occur..
Probab=100.00 E-value=6.3e-34 Score=235.40 Aligned_cols=205 Identities=14% Similarity=0.117 Sum_probs=165.1
Q ss_pred HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH----CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 967687999--9977454542279999999999961----4430147898889999999986311001122320000000
Q gi|254780891|r 9 LSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIG 82 (215)
Q Consensus 9 ~~~~~laal--las~IaHdlrtPL~~I~~~~elL~~----~~~~~~~~~~i~~~~~~~~~l~~~~r~~~~~~~~~~~~~~ 82 (215)
.++-++.++ |++-|-|||||-++-+...+..-++ |+-.++.++.|+.++.|+.+++.-+|.. +.+.......+
T Consensus 478 ~~arqF~~FnR~SaFvVHDLKNLvaQLSL~l~NA~~Hk~NPeFq~DmL~Tv~~~v~RM~~ll~qLr~~-~~p~~~~~~~~ 556 (696)
T TIGR02916 478 AEARQFEAFNRMSAFVVHDLKNLVAQLSLLLRNAERHKDNPEFQDDMLETVESAVNRMKKLLAQLREK-GLPEEEKKTVD 556 (696)
T ss_pred HHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCCHHHHEEH
T ss_conf 98888875188034211025899999999999887417896689999998999999999999997306-89740564103
Q ss_pred CCHHHHHH-HHHHHCCCCCCCCC---C--CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC-CCEEEEEEECC
Q ss_conf 00134444-43220122332110---0--000010001234445676646876532001111123557-72047999878
Q gi|254780891|r 83 LGDIEQVI-EDFIAVDKRVQVSW---T--GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSK-NENIFSLKING 155 (215)
Q Consensus 83 ~~~~~~~~-~~~~~~~~~~~~~~---~--~~~~~~~~~~~qvl~NLi~NA~~a~~~gg~I~i~~~~~~-~~~~i~V~D~G 155 (215)
..++.+.+ ++....+.+++++. + ......+.++.||+.||++||.+|||+.|.|.|++...+ +.++|+|+|+|
T Consensus 557 l~~L~~~~~~~k~~q~p~~e~~~~~~~~rl~~~a~~erl~rV~gHL~QNAlEAT~~~G~V~~~~~~~~~~~a~i~i~D~G 636 (696)
T TIGR02916 557 LVDLLRRVIASKRAQQPRPEVSIEDTDFRLSVRADRERLERVLGHLVQNALEATPEEGRVKIRVERECGGAAVIEIEDSG 636 (696)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEECCCCEEEEEEECHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCEEEEEEEECC
T ss_conf 89999999999863189448997175417888752888999999999988860499962899987418882279998657
Q ss_pred CCCCCHHHHHHHHCCCCCCCC-CCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEE
Q ss_conf 984402458874054545789-98720499999999970987999987799269999941
Q gi|254780891|r 156 NLARFPEKFTQIVDGNVESTI-DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 (215)
Q Consensus 156 ~Gi~~~e~~~~~~~~~~~~~~-~g~GlGl~~~~~i~~~~gG~i~v~~~~~~g~~f~~~l~ 214 (215)
+||++.-..+|+|+||.+||. .|.|||.|=|+++++++||+|+|+|.+|+||+||+.||
T Consensus 637 ~GM~~~FiR~rLF~PF~tTK~~aGMGIG~YE~~~yv~e~GG~i~V~S~pG~Gt~ftl~LP 696 (696)
T TIGR02916 637 CGMSEAFIRERLFKPFDTTKGNAGMGIGVYECRQYVEELGGRIEVESTPGKGTIFTLVLP 696 (696)
T ss_pred CCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEECCCCEEEEEECC
T ss_conf 899858998407899754456678720189999999983890588863588548887449
No 28
>TIGR01386 cztS_silS_copS heavy metal sensor kinase; InterPro: IPR006290 Members of this family contain a sensor histidine kinase domain (IPR003661 from INTERPRO) and a domain found in bacterial signal proteins (IPR003660 from INTERPRO). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc. ; GO: 0000155 two-component sensor activity, 0016775 phosphotransferase activity nitrogenous group as acceptor, 0000160 two-component signal transduction system (phosphorelay), 0007600 sensory perception.
Probab=100.00 E-value=1e-33 Score=234.05 Aligned_cols=197 Identities=14% Similarity=0.145 Sum_probs=148.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHCCCCHHHHHHHHHHH-------HHHHHHHHHHHCCCCCCCCCCCCCCC-CHHH
Q ss_conf 99977454542279999999999-961443014789888999-------99999863110011223200000000-0134
Q gi|254780891|r 17 LLCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSS-------MSAIIRLKFMRLAFGYTGSVDSLIGL-GDIE 87 (215)
Q Consensus 17 llas~IaHdlrtPL~~I~~~~el-L~~~~~~~~~~~~i~~~~-------~~~~~l~~~~r~~~~~~~~~~~~~~~-~~~~ 87 (215)
-++|.||||||||||.+.+-.|. |..+-..++|.+.|.... +++++|+=+.|...+.........++ .++.
T Consensus 263 ~FSaDlAHElRTPltNL~~~tQVaLS~~R~~~eY~e~l~snlEEl~RL~rMv~DMLFLAraD~~~~~~~~~~ldL~ae~~ 342 (483)
T TIGR01386 263 QFSADLAHELRTPLTNLLGQTQVALSRPRSGEEYREVLESNLEELERLSRMVEDMLFLARADNGRLALEREELDLAAELA 342 (483)
T ss_pred HHCHHHHHHHHCCHHHHHHHHHEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 31714566640125445665002005688988999999861899999999998999899852345677787512788887
Q ss_pred -H---HHHHHHH-CC--CCCCCCCC-CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCC
Q ss_conf -4---4443220-12--23321100-000010001234445676646876532001111123557720479998789844
Q gi|254780891|r 88 -Q---VIEDFIA-VD--KRVQVSWT-GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR 159 (215)
Q Consensus 88 -~---~~~~~~~-~~--~~~~~~~~-~~~~~~~~~~~qvl~NLi~NA~~a~~~gg~I~i~~~~~~~~~~i~V~D~G~Gi~ 159 (215)
+ ..+...+ .+ ..+.+..+ .....++..+.|++.||+.||++|+|.||.|+|.+....+.+.|.|+|+|+||+
T Consensus 343 l~~~~~fE~lAee~~Piv~l~v~G~P~~~~gD~~lfrRA~sNLLsNA~rhtp~g~~I~v~~~~~~d~~~~~v~N~G~~Ip 422 (483)
T TIGR01386 343 LKVAEYFEPLAEERGPIVSLRVEGEPAEVRGDALLFRRALSNLLSNALRHTPAGSTIDVRVERRADEVRVSVENTGDGIP 422 (483)
T ss_pred HHHHHHHHCCCCCCCCEEEEEEECCCCEEECCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCEEEEEEECCCCCCC
T ss_conf 88887742027678866899983242056024788899999999999860899885899996147756899835879998
Q ss_pred CHH----HHHHHHCCCCCC---CCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEE
Q ss_conf 024----588740545457---8998720499999999970987999987799269999941
Q gi|254780891|r 160 FPE----KFTQIVDGNVES---TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 (215)
Q Consensus 160 ~~e----~~~~~~~~~~~~---~~~g~GlGl~~~~~i~~~~gG~i~v~~~~~~g~~f~~~l~ 214 (215)
|+ .|+|||+...++ ...|+||||+||+.|++.|||++.++|.+++-++|++.+|
T Consensus 423 -~e~L~rLFdRFYR~D~aR~~G~~~g~GLGLAIV~SI~~~HGG~~~aeS~~~~~t~F~l~fp 483 (483)
T TIGR01386 423 -PEHLSRLFDRFYRVDPARSNGSQEGTGLGLAIVRSIMEAHGGRAEAESEADGKTRFKLRFP 483 (483)
T ss_pred -CCCCCCCCCCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCEEEEEEECC
T ss_conf -5235655530026763332766456760489999999823986899864892489876339
No 29
>COG5002 VicK Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=100.00 E-value=1e-33 Score=234.06 Aligned_cols=197 Identities=16% Similarity=0.154 Sum_probs=138.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH--HHHHH-------HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCH-H
Q ss_conf 99977454542279999999999961443014--78988-------89999999986311001122320000000001-3
Q gi|254780891|r 17 LLCSRICHDIISPIGAIHNSLELLDEVGIEDE--VMQLI-------RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGD-I 86 (215)
Q Consensus 17 llas~IaHdlrtPL~~I~~~~elL~~~~~~~~--~~~~i-------~~~~~~~~~l~~~~r~~~~~~~~~~~~~~~~~-~ 86 (215)
...|.|||||||||+++.+|+|.|++....+. +...+ +++.+.++++++++|................. +
T Consensus 227 efvanvSHElRTPltsmksyLEALe~ga~~d~eiAp~Fl~vt~~ETeRMiRlV~DLl~lsr~d~~~~qln~e~inft~fl 306 (459)
T COG5002 227 EFVANVSHELRTPLTSMKSYLEALEEGAWEDKEIAPRFLRVTLNETERMIRLVNDLLQLSRMDNARYQLNKEWINFTAFL 306 (459)
T ss_pred HHHHHCCHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
T ss_conf 99886140314736789999999746874471232689987478899999999999877257632566657888748899
Q ss_pred HHHHHHH---HHC-----CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCC
Q ss_conf 4444432---201-----22332110000001000123444567664687653200111112355772047999878984
Q gi|254780891|r 87 EQVIEDF---IAV-----DKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA 158 (215)
Q Consensus 87 ~~~~~~~---~~~-----~~~~~~~~~~~~~~~~~~~~qvl~NLi~NA~~a~~~gg~I~i~~~~~~~~~~i~V~D~G~Gi 158 (215)
..++..+ ... ..+--...+.....++..+.||+.|++.||++|+|.||+|++.+...++++.++|+|+|.||
T Consensus 307 ~~ii~R~e~~~~~e~~~~~vR~~p~~~~~veiD~DK~tQVldNii~NA~KYsP~Gg~Itv~~~~~~~~v~iSI~D~G~gI 386 (459)
T COG5002 307 NEIINRFEMILKKETIARFVRDIPKQDIWVEIDPDKMTQVLDNIISNALKYSPDGGRITVSVKQRETWVEISISDQGLGI 386 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCEEEEEECCCCCCC
T ss_conf 99999999987567788999608888648996706899999999877752489997399999630758999974688899
Q ss_pred CCHHH----HHHHHCCCC--CCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEE
Q ss_conf 40245----887405454--578998720499999999970987999987799269999941
Q gi|254780891|r 159 RFPEK----FTQIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 (215)
Q Consensus 159 ~~~e~----~~~~~~~~~--~~~~~g~GlGl~~~~~i~~~~gG~i~v~~~~~~g~~f~~~l~ 214 (215)
+ .++ |+|||+... +++.+|+|+||||++.|++.|||+||+++..|+|++|+++||
T Consensus 387 P-k~d~~~iFdrfyRvdkARsR~~gGTGLGLaIakeiV~~hgG~iWA~s~~gkgtt~~ftLP 447 (459)
T COG5002 387 P-KEDLEKIFDRFYRVDKARSRKMGGTGLGLAIAKEIVQAHGGRIWAESEEGKGTTFSFTLP 447 (459)
T ss_pred C-CHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCEEEEECCCCCCEEEEEEEC
T ss_conf 8-406899999885223665403787761299999999970985777604588617999954
No 30
>PRK11086 sensory histidine kinase DcuS; Provisional
Probab=100.00 E-value=1.3e-32 Score=226.94 Aligned_cols=192 Identities=15% Similarity=0.074 Sum_probs=132.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH----HHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 9676879999977454542279999999999961443014789888999999----998631100112232000000000
Q gi|254780891|r 9 LSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA----IIRLKFMRLAFGYTGSVDSLIGLG 84 (215)
Q Consensus 9 ~~~~~laallas~IaHdlrtPL~~I~~~~elL~~~~~~~~~~~~i~~~~~~~----~~l~~~~r~~~~~~~~~~~~~~~~ 84 (215)
++..+..+-.....+||++|||..|.+.+++-+.+ +..+++.+.+... ..+.+..+. +....
T Consensus 332 L~~v~~~~e~Lra~sHE~~n~L~~I~Gll~l~~~d----~~~~~i~~~~~~~~~~~~~l~~~i~~----------p~la~ 397 (541)
T PRK11086 332 LDGVVNYADALRAQSHEFMNKLHVILGLLHLKSYD----QLEDYILKTANNYQEEIGSLLGKIKS----------PVIAG 397 (541)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH----HHHHHHHHHHHHHHHHHHHHHHHCCC----------HHHHH
T ss_conf 99999999998761166640579998888643089----99999999999999999999986116----------88899
Q ss_pred HHHHHHHHHHHCCCCCCCCCCC--CCCCCC---HHHHHHHHHHHHHHHHHHH--HHCCCCCCCCCCCCCEEEEEEECCCC
Q ss_conf 1344444322012233211000--000100---0123444567664687653--20011111235577204799987898
Q gi|254780891|r 85 DIEQVIEDFIAVDKRVQVSWTG--EKIDLS---RERAKILLNLFMVAHASLP--RGGKVTISVQDSKNENIFSLKINGNL 157 (215)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~---~~~~qvl~NLi~NA~~a~~--~gg~I~i~~~~~~~~~~i~V~D~G~G 157 (215)
.+..-..........+.++.+. +....+ .++.+++.||+.||++|++ ++|+|.|++..+++.+.|.|+|+|+|
T Consensus 398 ~Llgk~~~a~E~gi~L~i~~~~~l~~~~~~~~~~~l~tVlgNLidNAi~A~~~~~~g~V~v~l~~~~~~l~i~V~D~G~G 477 (541)
T PRK11086 398 FLLGKISRARELGITLIISEDSQLPDSDDEDQVHELITILGNLIENALEAVSNEEGGEISVSLHYRHGWLHIEVSDDGPG 477 (541)
T ss_pred HHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCEEEEEEEECCCC
T ss_conf 99988999996698599706776778886466657999999999999997316899679999998899899999977988
Q ss_pred CCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEEC
Q ss_conf 4402458874054545789987204999999999709879999877992699999419
Q gi|254780891|r 158 ARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 (215)
Q Consensus 158 i~~~e~~~~~~~~~~~~~~~g~GlGl~~~~~i~~~~gG~i~v~~~~~~g~~f~~~l~~ 215 (215)
|+ ++..+++|+++++++.+|+|+|||+|+.+++.|||+|+++|.+|+||+|++.|||
T Consensus 478 I~-~e~~~~IFerg~StK~~g~GLGLaIvk~iVe~~gG~I~veS~~g~GT~Fti~LP~ 534 (541)
T PRK11086 478 IA-PEEIEAIFDKGYSTKGSNRGVGLYLVKQSVENLGGSIAVESEPGIGTQFFVQIPW 534 (541)
T ss_pred CC-HHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCEEEEEEECC
T ss_conf 59-7799887179874189991103999999999859989999669993799999606
No 31
>COG3852 NtrB Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms]
Probab=99.97 E-value=9.8e-30 Score=208.77 Aligned_cols=196 Identities=15% Similarity=0.131 Sum_probs=149.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHH----H
Q ss_conf 99977454542279999999999961443---0147898889999999986311001122320000000001344----4
Q gi|254780891|r 17 LLCSRICHDIISPIGAIHNSLELLDEVGI---EDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ----V 89 (215)
Q Consensus 17 llas~IaHdlrtPL~~I~~~~elL~~~~~---~~~~~~~i~~~~~~~~~l~~~~r~~~~~~~~~~~~~~~~~~~~----~ 89 (215)
.+++++||||||||+.|+|++|+|+..-. ..++.+.|-+.+.++..+++-+...............++.+.+ +
T Consensus 134 ~L~r~LAHEIKNPL~GiRGAAQLLe~~lpd~~~~~lt~lIieE~DRl~~LVDRme~~~~~rp~~r~~~NIH~VLerV~~l 213 (363)
T COG3852 134 GLVRGLAHEIKNPLGGIRGAAQLLERALPDEALRELTQLIIEEADRLRNLVDRLEVLGPQRPGDRVPVNIHEVLERVRAL 213 (363)
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 99987788722853101449999974589867789999999999999999999875087898553543199999999999
Q ss_pred HHHHHHCCCCCCCCCCCCCC--C-CCHHHHHHHHHHHHHHHHHHH----HHCCCCCCCC----------CCCCCEEEEEE
Q ss_conf 44322012233211000000--1-000123444567664687653----2001111123----------55772047999
Q gi|254780891|r 90 IEDFIAVDKRVQVSWTGEKI--D-LSRERAKILLNLFMVAHASLP----RGGKVTISVQ----------DSKNENIFSLK 152 (215)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~--~-~~~~~~qvl~NLi~NA~~a~~----~gg~I~i~~~----------~~~~~~~i~V~ 152 (215)
++..+..+.++.-++++..+ + ++.++.|++.||+.||.+|.. .+|+|.++++ ...-...+.|.
T Consensus 214 v~~e~~~~i~l~rdYDPSLP~v~~d~DqliQv~LNlVrNAaqA~~~~~~~~g~I~LrTR~~~q~~i~g~r~rl~l~leVi 293 (363)
T COG3852 214 VEAEFADNVRLIRDYDPSLPEVLGDRDQLIQVFLNLVRNAAQALGGRADEGGEIILRTRTGIQLTIAGTRYRLALPLEVI 293 (363)
T ss_pred HHCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCEEEECCCCEEEEEEEEEEE
T ss_conf 85436775588502799885323698999999999999999971677877856999722425887167424663116986
Q ss_pred ECCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEE
Q ss_conf 87898440245887405454578998720499999999970987999987799269999941
Q gi|254780891|r 153 INGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 (215)
Q Consensus 153 D~G~Gi~~~e~~~~~~~~~~~~~~~g~GlGl~~~~~i~~~~gG~i~v~~~~~~g~~f~~~l~ 214 (215)
|+|||| |++..+.+|.|+.+++.+|+||||++++.++.+|||-|.++|.+| .|+|.+.||
T Consensus 294 DNGPGV-P~~L~~~lF~P~Vs~r~~GsGLGLala~~li~qH~G~Ie~~S~Pg-~T~FrvllP 353 (363)
T COG3852 294 DNGPGV-PPDLQDHLFYPMVSGREGGTGLGLALAQNLIDQHGGKIEFDSWPG-RTVFRVLLP 353 (363)
T ss_pred CCCCCC-CHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCC-CEEEEEEEE
T ss_conf 189999-867864300230206889866148999998985297898742689-458999863
No 32
>COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms]
Probab=99.97 E-value=2.8e-29 Score=205.86 Aligned_cols=204 Identities=15% Similarity=0.123 Sum_probs=145.6
Q ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHC---CCC------HHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 9967687999--99774545422799999999999614---430------147898889999999986311001122320
Q gi|254780891|r 8 NLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV---GIE------DEVMQLIRLSSMSAIIRLKFMRLAFGYTGS 76 (215)
Q Consensus 8 ~~~~~~laal--las~IaHdlrtPL~~I~~~~elL~~~---~~~------~~~~~~i~~~~~~~~~l~~~~r~~~~~~~~ 76 (215)
.+.+.+.++- +|.+||||||||||.|+.++|.|... ... +.+.+.|-+.+..+.+|++-++.....+.+
T Consensus 477 LV~AQRs~AW~dVArRIAHEIKNPLTPIQLSAERl~rk~gk~i~eDrevfd~~tdTIirQV~dI~rMVdeF~afARmP~p 556 (712)
T COG5000 477 LVIAQRSAAWGDVARRIAHEIKNPLTPIQLSAERLLRKLGKEIDEDREVFDRCTDTIIRQVEDIKRMVDEFRAFARMPAP 556 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 99999987899999999887249986220028999988374123489999999999999999999999999987148998
Q ss_pred CCCCCCCCHHHHHHHHHH------HCCCCCCCCCCCC---CCCCCHHHHHHHHHHHHHHHHHHHH-------HCCCCCCC
Q ss_conf 000000001344444322------0122332110000---0010001234445676646876532-------00111112
Q gi|254780891|r 77 VDSLIGLGDIEQVIEDFI------AVDKRVQVSWTGE---KIDLSRERAKILLNLFMVAHASLPR-------GGKVTISV 140 (215)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~---~~~~~~~~~qvl~NLi~NA~~a~~~-------gg~I~i~~ 140 (215)
..... ++..++++.. ...+++..++..+ ..+++..+.|+|.||++||.+|... ++.|+++.
T Consensus 557 ~~e~~---dL~~ll~e~~~L~e~~~~~i~f~~e~g~epl~~~~D~~~l~Qvf~NliKNA~EAi~~~~~~e~~~~~i~~~~ 633 (712)
T COG5000 557 KLEKS---DLRALLKEVSFLYEIGNDHIVFAAEFGGEPLIGMADATLLGQVFGNLLKNAAEAIEAVEAEERRTALIRVSL 633 (712)
T ss_pred CCCCC---HHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEE
T ss_conf 77742---299999999999962687769975318986253248999999999998719987531013467764389998
Q ss_pred CCCCCCEEEEEEECCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEE-CCCCEEEEEEEEC
Q ss_conf 35577204799987898440245887405454578998720499999999970987999987-7992699999419
Q gi|254780891|r 141 QDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEII-DDHNVVLSALLEK 215 (215)
Q Consensus 141 ~~~~~~~~i~V~D~G~Gi~~~e~~~~~~~~~~~~~~~g~GlGl~~~~~i~~~~gG~i~v~~~-~~~g~~f~~~l~~ 215 (215)
...++.+++.|.|+|.|.+ .+...++|+|+.+++.+|+|+||++||.|+|+|||+|.+++. +-+|+.+.+.+|+
T Consensus 634 ~~~~g~i~v~V~DNGkG~p-~e~r~r~~EPYvTtr~KGTGLGLAiVKkIvEeHGG~leL~da~d~~GA~i~i~fp~ 708 (712)
T COG5000 634 DDADGRIVVDVIDNGKGFP-RENRHRALEPYVTTREKGTGLGLAIVKKIVEEHGGRLELHNAPDFDGAMIRIKFPL 708 (712)
T ss_pred ECCCCEEEEEEECCCCCCC-HHHHHHHCCCCEECCCCCCCCCHHHHHHHHHHCCCEEEECCCCCCCCCEEEEECCC
T ss_conf 4479849999810898799-67864323671421656666239999999996388277247899997679998365
No 33
>COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms]
Probab=99.96 E-value=1.2e-27 Score=195.58 Aligned_cols=205 Identities=16% Similarity=0.162 Sum_probs=143.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHH---HHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 9996768799999774545422799999999999614---43014789888---99999999863110011223200000
Q gi|254780891|r 7 FNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV---GIEDEVMQLIR---LSSMSAIIRLKFMRLAFGYTGSVDSL 80 (215)
Q Consensus 7 ~~~~~~~laallas~IaHdlrtPL~~I~~~~elL~~~---~~~~~~~~~i~---~~~~~~~~l~~~~r~~~~~~~~~~~~ 80 (215)
+..++.++-+ ++.-++||+++||..|.+|+++|.+. ..++++.+.|. +.+..+.++++.+... +..+.....
T Consensus 517 lersn~el~~-f~yv~sHdlqePl~~I~~~a~lL~~~~~~~~d~~~~~~i~~~~~~~~~~~~lidd~l~~-s~l~~~~~~ 594 (750)
T COG4251 517 LERSNAELRA-FAYVASHDLQEPLRQISNYAQLLSERYSDALDEEAKEFITFISRLTSLMQQLIDDLLTY-SKLGLTEAP 594 (750)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCCCCC
T ss_conf 7651589999-99986104667999999999766634366657588999999999999999999977423-120554577
Q ss_pred CCCCHHHHHHHHHH--------HCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-CCCCCCCCCCCCCEEEEE
Q ss_conf 00001344444322--------012233211000000100012344456766468765320-011111235577204799
Q gi|254780891|r 81 IGLGDIEQVIEDFI--------AVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSL 151 (215)
Q Consensus 81 ~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~qvl~NLi~NA~~a~~~g-g~I~i~~~~~~~~~~i~V 151 (215)
....++.+++.... .....+.+..-+....++.++.|++.||+.||++|..++ ..|.|+....++.+.+.|
T Consensus 595 l~~td~~~vv~~vl~~l~~ri~dtgaei~i~~lp~v~~d~~~l~qv~~NLi~Naik~~~~e~~~i~I~~~r~ed~~t~sV 674 (750)
T COG4251 595 LQPTDVQKVVDKVLLELSQRIADTGAEIRIAPLPVVAADATQLGQVFQNLIANAIKFGGPENPDIEISAERQEDEWTFSV 674 (750)
T ss_pred CCCCCHHHHHHHHHHHCCCCCCCCCCEEEECCCCEEECCHHHHHHHHHHHHHHHEECCCCCCCCEEEEEECCCCCEEEEE
T ss_conf 77752678999999734531125652478625644640888999999998765521078889815885332587307985
Q ss_pred EECCCCCCCHHHHHHHHCCC----CCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEE
Q ss_conf 98789844024588740545----4578998720499999999970987999987799269999941
Q gi|254780891|r 152 KINGNLARFPEKFTQIVDGN----VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 (215)
Q Consensus 152 ~D~G~Gi~~~e~~~~~~~~~----~~~~~~g~GlGl~~~~~i~~~~gG~i~v~~~~~~g~~f~~~l~ 214 (215)
.|+|.||. |+.++++|..| ...+..|+|+|||||+.|+|.|+|+|++|+++|+|+||.++||
T Consensus 675 ~dng~Gi~-~a~~~riF~iFqRl~s~~~y~gtG~GL~I~kkI~e~H~G~i~vEs~~gEgsTF~f~lp 740 (750)
T COG4251 675 RDNGIGID-PAYFERIFVIFQRLHSRDEYLGTGLGLAICKKIAERHQGRIWVESTPGEGSTFYFTLP 740 (750)
T ss_pred CCCCCCCC-HHHHHHHHHHHHHCCCHHHHCCCCCCHHHHHHHHHHHCCEEEEEECCCCCEEEEEEEE
T ss_conf 47877769-8999888998870375655147773389999999984845888604787416899840
No 34
>COG5385 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.93 E-value=2.1e-25 Score=181.26 Aligned_cols=212 Identities=41% Similarity=0.752 Sum_probs=194.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 90159999967687999997745454227999999999996144301478988899999999863110011223200000
Q gi|254780891|r 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSL 80 (215)
Q Consensus 1 ~~~~~~~~~~~~~laallas~IaHdlrtPL~~I~~~~elL~~~~~~~~~~~~i~~~~~~~~~l~~~~r~~~~~~~~~~~~ 80 (215)
|..+....++..+||++|+|+||||+-+|.++|.+.+|+|++++.+++.+++|..+++.+..+++|.|..++.+++....
T Consensus 1 ~~~~~~~tlsgpDlaAlLcsRvCHDiISPvgAInnGLeLLdeg~addDAm~LIrsSArnas~rLqFaR~AFGAsgSag~~ 80 (214)
T COG5385 1 MPASPNATLSGPDLAALLCSRVCHDIISPVGAINNGLELLDEGGADDDAMDLIRSSARNASVRLQFARLAFGASGSAGAS 80 (214)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 99897654356428999999887540481777603256642689647899999997651788877889872555543335
Q ss_pred CCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCC
Q ss_conf 00001344444322012233211000000100012344456766468765320011111235577204799987898440
Q gi|254780891|r 81 IGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 (215)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qvl~NLi~NA~~a~~~gg~I~i~~~~~~~~~~i~V~D~G~Gi~~ 160 (215)
++..+.....++++... +.+++|+.+....|.+..+++.||+.-|.-+.|.||.+.++++.-+...+|+|...|+-++.
T Consensus 81 iDtgeaek~A~~~~a~e-kpe~~W~g~r~~~~Kn~vkllLNl~lia~~aiPrGG~~~vtle~~e~d~rfsi~akG~m~Rv 159 (214)
T COG5385 81 IDTGEAEKAAQDFFANE-KPELTWNGPRAILPKNRVKLLLNLFLIAYGAIPRGGSLVVTLENPETDARFSIIAKGRMMRV 159 (214)
T ss_pred CCCHHHHHHHHHHHHCC-CCCCCCCCCHHHCCCCHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCEEEEEECCCCCCC
T ss_conf 66066999999998623-87123558742247505899999999970557889826899536776743899832753447
Q ss_pred HHHHHHHHCCC-CCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEE
Q ss_conf 24588740545-4578998720499999999970987999987799269999941
Q gi|254780891|r 161 PEKFTQIVDGN-VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 (215)
Q Consensus 161 ~e~~~~~~~~~-~~~~~~g~GlGl~~~~~i~~~~gG~i~v~~~~~~g~~f~~~l~ 214 (215)
|..|-.+..+. .+...++|.++.|+.-.++++-|++|.++.+.+ ..+|+.-.+
T Consensus 160 ppk~lel~~G~~~eE~vdahsVQpyYt~lLa~eAgm~I~v~~~~e-~iv~~A~v~ 213 (214)
T COG5385 160 PPKFLELHSGEPPEEAVDAHSVQPYYTLLLAEEAGMTISVHATAE-RIVFTAWVV 213 (214)
T ss_pred CHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCC-EEEEEEECC
T ss_conf 989986505998422478753039999999997098689996364-379997514
No 35
>COG0642 BaeS Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=99.93 E-value=2.9e-24 Score=173.97 Aligned_cols=199 Identities=19% Similarity=0.239 Sum_probs=135.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHH----HHHHHHCCCCC-CCCCCCCCCCCHHH
Q ss_conf 9999977454542279999999999961443--01478988899999999----86311001122-32000000000134
Q gi|254780891|r 15 VALLCSRICHDIISPIGAIHNSLELLDEVGI--EDEVMQLIRLSSMSAII----RLKFMRLAFGY-TGSVDSLIGLGDIE 87 (215)
Q Consensus 15 aallas~IaHdlrtPL~~I~~~~elL~~~~~--~~~~~~~i~~~~~~~~~----l~~~~r~~~~~-~~~~~~~~~~~~~~ 87 (215)
...+.+.++||+|||++.+.++++.+..... .......+.....++.. +..+.+..... ............+.
T Consensus 115 ~~~~~~~~~hel~~pl~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~ 194 (336)
T COG0642 115 KREFLANISHELRTPLTAIRGLLELLLEGLLDPQRELLEIIEEEAERLLRLVNDLLDLSRLEAGTKLKLLLELVDLAELL 194 (336)
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHH
T ss_conf 99999999888589799999999997414652599999999999999999999999999764457442234645599999
Q ss_pred -HHHHHHHHC--CCCCCCCCCC----CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCC
Q ss_conf -444432201--2233211000----000100012344456766468765320011111235577204799987898440
Q gi|254780891|r 88 -QVIEDFIAV--DKRVQVSWTG----EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 (215)
Q Consensus 88 -~~~~~~~~~--~~~~~~~~~~----~~~~~~~~~~qvl~NLi~NA~~a~~~gg~I~i~~~~~~~~~~i~V~D~G~Gi~~ 160 (215)
+.+...... ...+.+.... .....+..+.+++.||+.||++|++ ++.|.|.+...++.+.++|.|+|+||+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~l~~vl~nLi~NAi~~~~-~~~i~i~~~~~~~~i~i~V~D~G~Gi~- 272 (336)
T COG0642 195 EEVVRLLAPLAQEKGIELAVDLPELPYVLGDPERLRQVLVNLLSNAIKYTP-GGEITISVRQDDEQVTISVEDTGPGIP- 272 (336)
T ss_pred HHHHHHHHHHHHHCCEEEEEECCCCEEEEECHHHHHHHHHHHHHHHHHHCC-CCEEEEEEEECCCEEEEEEECCCCCCC-
T ss_conf 999999998766348489982376607860788999999999998998668-985999999638779999980789979-
Q ss_pred HHHHHHHHCCCCCCCCC--CCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEEC
Q ss_conf 24588740545457899--87204999999999709879999877992699999419
Q gi|254780891|r 161 PEKFTQIVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 (215)
Q Consensus 161 ~e~~~~~~~~~~~~~~~--g~GlGl~~~~~i~~~~gG~i~v~~~~~~g~~f~~~l~~ 215 (215)
++...++|+++++++.. |+|+||++|+.+++.|||.+.+++.++.|++|+++||+
T Consensus 273 ~~~~~~if~~~~~~~~~~~g~GlGL~i~~~~~~~~~g~i~~~~~~~~Gt~~~i~lP~ 329 (336)
T COG0642 273 EEELERIFEPFFRTDKSRSGTGLGLAIVKRIVELHGGTISVESEPGKGTTFTIRLPL 329 (336)
T ss_pred HHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCEEEEEEEEC
T ss_conf 889998818863479998988632999999999879989995079997799999847
No 36
>COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms]
Probab=99.91 E-value=1.4e-22 Score=163.37 Aligned_cols=197 Identities=16% Similarity=0.130 Sum_probs=142.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHH
Q ss_conf 99676879999977454542279999999999961443014789888999999998631100112232000000000134
Q gi|254780891|r 8 NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE 87 (215)
Q Consensus 8 ~~~~~~laallas~IaHdlrtPL~~I~~~~elL~~~~~~~~~~~~i~~~~~~~~~l~~~~r~~~~~~~~~~~~~~~~~~~ 87 (215)
.++..+.-+---..-+||+.|-|.+|.|.+++= .-++..++|.+.+..-....+++.... ..+....-+.
T Consensus 326 qLt~vr~ya~aLRaq~HEfmNkLhtI~GLlql~----~yd~a~~~I~~~~~~qq~~~~~l~~~i------~~~~lAg~Ll 395 (537)
T COG3290 326 QLTGVRQYAEALRAQSHEFMNKLHTILGLLQLG----EYDDALDYIQQESEEQQELIDSLSEKI------KDPVLAGFLL 395 (537)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHH
T ss_conf 999899999999885288888899998788505----378999999998764045689999851------2088899988
Q ss_pred HHHHHHHHCCCCCCCCCCCC-----CCCCCHHHHHHHHHHHHHHHHHHH---HHCCCCCCCCCCCCCEEEEEEECCCCCC
Q ss_conf 44443220122332110000-----001000123444567664687653---2001111123557720479998789844
Q gi|254780891|r 88 QVIEDFIAVDKRVQVSWTGE-----KIDLSRERAKILLNLFMVAHASLP---RGGKVTISVQDSKNENIFSLKINGNLAR 159 (215)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~qvl~NLi~NA~~a~~---~gg~I~i~~~~~~~~~~i~V~D~G~Gi~ 159 (215)
.-+..+...+..+.++.+.. ....+.++.-++-||+.||.+|.. .+.+|.++....++.+.|+|+|+||||+
T Consensus 396 gK~~rArElgv~l~Id~~S~l~~~p~~~~~~~litIlGNLidNA~eA~~~~~~~k~I~l~i~~~~~~lvieV~D~G~GI~ 475 (537)
T COG3290 396 GKISRARELGVSLIIDPNSQLPQLPSELQPHDLVTILGNLIDNALEALLAPEENKEIELSLSDRGDELVIEVADTGPGIP 475 (537)
T ss_pred HHHHHHHHCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCEEEEEEECCCCCCC
T ss_conf 68999997296599757986788987667678999999988778888515578967999998369879999957999989
Q ss_pred CHHHHHHHHCCCCCCCC-CCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEEC
Q ss_conf 02458874054545789-987204999999999709879999877992699999419
Q gi|254780891|r 160 FPEKFTQIVDGNVESTI-DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 (215)
Q Consensus 160 ~~e~~~~~~~~~~~~~~-~g~GlGl~~~~~i~~~~gG~i~v~~~~~~g~~f~~~l~~ 215 (215)
|+..+++|+..++++. .++|+|||+++++++++||.|++++.++.|++|++.|||
T Consensus 476 -~~~~~~iFe~G~Stk~~~~rGiGL~Lvkq~V~~~~G~I~~~s~~~~Gt~F~i~iP~ 531 (537)
T COG3290 476 -PEVRDKIFEKGVSTKNTGGRGIGLYLVKQLVERLGGSIEVESEKGQGTRFSIYIPK 531 (537)
T ss_pred -HHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCEEEEEECCC
T ss_conf -68877787348414677887612889999998749669995078981499998888
No 37
>TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL; InterPro: IPR014285 NifL modulates the activity of the nitrogen fixation positive regulator protein NifA, acting as a negative regulator by binding NifA. NifA and NifL are encoded by adjacent genes..
Probab=99.88 E-value=3.6e-21 Score=154.39 Aligned_cols=207 Identities=12% Similarity=0.107 Sum_probs=156.8
Q ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHC-CC---CHHHHHHHHHHHHHHHHHHHHHHCC-----CC
Q ss_conf 9999967687999---99774545422799999999999614-43---0147898889999999986311001-----12
Q gi|254780891|r 5 ICFNLSSMDLVAL---LCSRICHDIISPIGAIHNSLELLDEV-GI---EDEVMQLIRLSSMSAIIRLKFMRLA-----FG 72 (215)
Q Consensus 5 ~~~~~~~~~laal---las~IaHdlrtPL~~I~~~~elL~~~-~~---~~~~~~~i~~~~~~~~~l~~~~r~~-----~~ 72 (215)
.++-.+..+++++ |.|-| |-|..|++.|.++..+|+.- ++ ++...+++++....-..-++-++.. ..
T Consensus 264 qAlmAEEE~le~~rEtl~AAI-hrl~gP~NlisaA~~~L~RRlGD~AGn~a~~~~lqqa~~ag~e~~e~L~~~IP~s~~e 342 (496)
T TIGR02938 264 QALMAEEEKLEALRETLSAAI-HRLQGPLNLISAAISVLERRLGDDAGNDAVAALLQQALAAGREALEALEKVIPQSDAE 342 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 999989988888766688888-8852871078899998632058323797999999999886399999750578877244
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCC-----CHHHHHHHHHHHHHHHHHHHHHC----CCCCCCCCC
Q ss_conf 232000000000134444432201223321100000010-----00123444567664687653200----111112355
Q gi|254780891|r 73 YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL-----SRERAKILLNLFMVAHASLPRGG----KVTISVQDS 143 (215)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~qvl~NLi~NA~~a~~~gg----~I~i~~~~~ 143 (215)
...+.+.+..+.|+..+..+-+-.. -+-++|.+..... +.+++-+|-.|+.|||++|...+ ++.|++...
T Consensus 343 ~~~pVNlN~~lrdvi~l~T~rLLA~-GIvVdW~Pa~~LP~~~G~e~~lRslfK~LvdNAIeaM~~~~~~RREL~i~t~~~ 421 (496)
T TIGR02938 343 AVVPVNLNQVLRDVITLLTERLLAA-GIVVDWQPAAVLPAVLGSESRLRSLFKALVDNAIEAMAQKGVKRRELSILTAVE 421 (496)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHC-CCEECCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHC
T ss_conf 5466427789999998610557557-541516561016222078525789999999999998530784102310102230
Q ss_pred CCCEEEEEEECCCCCCCHHHHHHHHCCCCCCCC----CCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEE
Q ss_conf 772047999878984402458874054545789----98720499999999970987999987799269999941
Q gi|254780891|r 144 KNENIFSLKINGNLARFPEKFTQIVDGNVESTI----DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 (215)
Q Consensus 144 ~~~~~i~V~D~G~Gi~~~e~~~~~~~~~~~~~~----~g~GlGl~~~~~i~~~~gG~i~v~~~~~~g~~f~~~l~ 214 (215)
++.++++|.|+|||| |++...+.|.|||++|. .+.|.||+.+++||.+|+|-|.++....+||...+-++
T Consensus 422 ~~li~~~i~DsGPGI-P~dlr~kvFEPFFttK~~~Gr~h~G~GL~vaqeiVa~H~G~i~~D~dy~eGCri~vef~ 495 (496)
T TIGR02938 422 DDLIRVEIEDSGPGI-PADLRLKVFEPFFTTKASSGRKHVGMGLAVAQEIVAKHAGLIDVDDDYREGCRIVVEFE 495 (496)
T ss_pred CCEEEEEEEECCCCC-CCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCEEEECCCCCCCCEEEEEEC
T ss_conf 856899997358798-72442252367322688877842334626889997504987973688877735777623
No 38
>smart00387 HATPase_c Histidine kinase-like ATPases. Histidine kinase-, DNA gyrase B-, phytochrome-like ATPases.
Probab=99.87 E-value=6.2e-22 Score=159.22 Aligned_cols=104 Identities=17% Similarity=0.197 Sum_probs=95.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHCCCCCCC-----CCCCCHHHHH
Q ss_conf 00012344456766468765320011111235577204799987898440245887405454578-----9987204999
Q gi|254780891|r 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST-----IDSHDIQFYY 185 (215)
Q Consensus 111 ~~~~~~qvl~NLi~NA~~a~~~gg~I~i~~~~~~~~~~i~V~D~G~Gi~~~e~~~~~~~~~~~~~-----~~g~GlGl~~ 185 (215)
++..+.|++.||+.||++|++.++.|+|++...++.+.|.|+|+|+||+ ++...++|++++..+ ..|+|||||+
T Consensus 2 d~~~l~~il~Nli~NAik~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~-~~~~~~if~~f~~~~~~~~~~~g~GlGL~i 80 (111)
T smart00387 2 DPDRLRQVLSNLLDNAIKYTPEGGRITVTLERDGDHLEITVEDNGPGIP-PEDLEKIFEPFFRTDGRSRKIGGTGLGLSI 80 (111)
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCEEEEEEEECCCCCC-HHHHHHCCCCCEECCCCCCCCCCCCHHHHH
T ss_conf 8899999999999999996779978999999839999999998899739-899964269947779999887976648999
Q ss_pred HHHHHHHCCCEEEEEEECCCCEEEEEEEEC
Q ss_conf 999999709879999877992699999419
Q gi|254780891|r 186 VILLAHENKIRLLPEIIDDHNVVLSALLEK 215 (215)
Q Consensus 186 ~~~i~~~~gG~i~v~~~~~~g~~f~~~l~~ 215 (215)
|+.+++.|||+|++++.+++|++|++.||.
T Consensus 81 ~~~i~~~~~G~i~i~s~~~~Gt~~~i~lP~ 110 (111)
T smart00387 81 VKKLVELHGGEISVESEPGGGTTFTITLPL 110 (111)
T ss_pred HHHHHHHCCCEEEEEECCCCEEEEEEEEEC
T ss_conf 999999879989999659981899999981
No 39
>pfam02518 HATPase_c Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. This family represents the structurally related ATPase domains of histidine kinase, DNA gyrase B and HSP90.
Probab=99.87 E-value=9.7e-22 Score=157.99 Aligned_cols=104 Identities=15% Similarity=0.151 Sum_probs=96.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHCCCCCCCC-----CCCCHHHHH
Q ss_conf 000123444567664687653200111112355772047999878984402458874054545789-----987204999
Q gi|254780891|r 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI-----DSHDIQFYY 185 (215)
Q Consensus 111 ~~~~~~qvl~NLi~NA~~a~~~gg~I~i~~~~~~~~~~i~V~D~G~Gi~~~e~~~~~~~~~~~~~~-----~g~GlGl~~ 185 (215)
++..+.|++.||+.||++|++.++.|+|++..+++.+.|+|+|+|+||+ ++...++|+++++.+. +|+|||||+
T Consensus 2 d~~~l~~i~~nll~NAik~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~-~~~~~~if~~f~~~~~~~~~~~g~GlGL~i 80 (111)
T pfam02518 2 DEDRLRQVLSNLLDNAIKHAPAGGEIEVTLERDGGRLRITVEDNGIGIP-PEDLPKIFEPFFRTDKDSRKVGGTGLGLSI 80 (111)
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCEEEEEEEECCCCCC-HHHHHHHCCCCEECCCCCCCCCCCCHHHHH
T ss_conf 8899999999999999997799975999999959999999998999959-899988749917779999777977647999
Q ss_pred HHHHHHHCCCEEEEEEECCCCEEEEEEEEC
Q ss_conf 999999709879999877992699999419
Q gi|254780891|r 186 VILLAHENKIRLLPEIIDDHNVVLSALLEK 215 (215)
Q Consensus 186 ~~~i~~~~gG~i~v~~~~~~g~~f~~~l~~ 215 (215)
|+.+++.|||+|++++.+++|++|++.||.
T Consensus 81 ~~~~~~~~~g~i~~~s~~~~Gt~~~i~lp~ 110 (111)
T pfam02518 81 VRKLVELHGGTITVESEPGGGTTFTFTLPL 110 (111)
T ss_pred HHHHHHHCCCEEEEEECCCCEEEEEEEEEE
T ss_conf 999999879989999659983899999970
No 40
>cd00075 HATPase_c Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins
Probab=99.84 E-value=1.5e-20 Score=150.38 Aligned_cols=98 Identities=21% Similarity=0.213 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHHHHHHHH-HCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHCCC----CCCCCCCCCHHHHHHHHH
Q ss_conf 234445676646876532-001111123557720479998789844024588740545----457899872049999999
Q gi|254780891|r 115 RAKILLNLFMVAHASLPR-GGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN----VESTIDSHDIQFYYVILL 189 (215)
Q Consensus 115 ~~qvl~NLi~NA~~a~~~-gg~I~i~~~~~~~~~~i~V~D~G~Gi~~~e~~~~~~~~~----~~~~~~g~GlGl~~~~~i 189 (215)
+.|++.||+.||++|++. .+.|+|++..+++.+.|.|+|+|+||+ ++...++|+|+ ..+..+|+|||||+|+.+
T Consensus 1 l~~vl~nLl~NAik~~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~-~~~~~~if~~f~~~~~~~~~~g~GlGL~i~~~i 79 (103)
T cd00075 1 LQQVLLNLLSNAIKHTPEGGGRITISVERDGDHLEIRVEDNGPGIP-EEDLERIFERFSDGSRSRKGGGTGLGLSIVKKL 79 (103)
T ss_pred CHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCEEEEEEEECCCCCC-HHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf 9699999999999867899948999999839999999997799408-899976069750178887789865059999999
Q ss_pred HHHCCCEEEEEEECCCCEEEEEEE
Q ss_conf 997098799998779926999994
Q gi|254780891|r 190 AHENKIRLLPEIIDDHNVVLSALL 213 (215)
Q Consensus 190 ~~~~gG~i~v~~~~~~g~~f~~~l 213 (215)
++.|||+|++++.+++|++|++.|
T Consensus 80 ~~~~~G~i~i~s~~~~Gt~~~i~l 103 (103)
T cd00075 80 VELHGGRIEVESEPGGGTTFTITL 103 (103)
T ss_pred HHHCCCEEEEEECCCCCEEEEEEC
T ss_conf 998899899996599919999989
No 41
>pfam10090 DUF2328 Uncharacterized protein conserved in bacteria (DUF2328). Members of this family of hypothetical bacterial proteins have no known function.
Probab=99.83 E-value=1.4e-19 Score=144.26 Aligned_cols=177 Identities=37% Similarity=0.591 Sum_probs=156.8
Q ss_pred HHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 99999999999614430--1478988899999999863110011223200000000013444443220122332110000
Q gi|254780891|r 30 IGAIHNSLELLDEVGIE--DEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107 (215)
Q Consensus 30 L~~I~~~~elL~~~~~~--~~~~~~i~~~~~~~~~l~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (215)
+++|.+++|+|++++.. .+.+++|.++++.+...++|+|.+++.++ ........++.+++++++.. .+++++|+.+
T Consensus 1 vGAI~NGLELL~~~~~~~~~~~m~LI~~Sa~~A~aRl~F~RlAfGaag-~~~~i~~~e~~~~~~~~~~~-~r~~l~W~~~ 78 (181)
T pfam10090 1 VGAIVNGLELLDDEGDPEMGPEMALIRESARNASARLRFFRLAFGAAG-AGQQIDLAEAKSVLEGYLAG-GRITLDWQLE 78 (181)
T ss_pred CCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCCCCHHHHHHHHHHHHHC-CCEEEEECCC
T ss_conf 931255588870789864168999999999999999999999808468-88856999999999999838-8538983587
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHCCC-CCCCCCCCCHHHHHH
Q ss_conf 0010001234445676646876532001111123557720479998789844024588740545-457899872049999
Q gi|254780891|r 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN-VESTIDSHDIQFYYV 186 (215)
Q Consensus 108 ~~~~~~~~~qvl~NLi~NA~~a~~~gg~I~i~~~~~~~~~~i~V~D~G~Gi~~~e~~~~~~~~~-~~~~~~g~GlGl~~~ 186 (215)
....|+..+|++.|++..+..++|.||+|+|++ .+++...++|+-+|+.+++++.++..+.+. +....+++.+++|+.
T Consensus 79 ~~~~~k~~vklllnl~l~~~~AlprGG~i~V~~-~~~~~~~~~v~a~g~r~~~~~~~~~~L~g~~~~~~l~~~~VQ~~~l 157 (181)
T pfam10090 79 RDLLPKPEVKLLLNLLLIAEDALPRGGEIDVGE-GSDGAGGWRVTAEGERLRIDPDLWAALAGGAPEEELDARNVQFYLL 157 (181)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEE-ECCCCCEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHH
T ss_conf 454887999999999999997547787789998-4178975999997046789978999856999877899876499999
Q ss_pred HHHHHHCCCEEEEEEECCCCEEEE
Q ss_conf 999997098799998779926999
Q gi|254780891|r 187 ILLAHENKIRLLPEIIDDHNVVLS 210 (215)
Q Consensus 187 ~~i~~~~gG~i~v~~~~~~g~~f~ 210 (215)
..++++.|++|.++..++ +.+|+
T Consensus 158 ~~la~~~G~~l~~~~~~~-~i~l~ 180 (181)
T pfam10090 158 PLLAREAGGTLSYEITED-GIVLS 180 (181)
T ss_pred HHHHHHCCCCEEEEECCC-EEEEE
T ss_conf 999998699117886497-79981
No 42
>COG4192 Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal transduction mechanisms]
Probab=99.81 E-value=1.5e-18 Score=137.76 Aligned_cols=211 Identities=11% Similarity=-0.021 Sum_probs=142.7
Q ss_pred CHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH---HCCC---CHHHHHHHHHHHHHHHH----HHHHHHC
Q ss_conf 0159999967687999--997745454227999999999996---1443---01478988899999999----8631100
Q gi|254780891|r 2 AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD---EVGI---EDEVMQLIRLSSMSAII----RLKFMRL 69 (215)
Q Consensus 2 ~~~~~~~~~~~~laal--las~IaHdlrtPL~~I~~~~elL~---~~~~---~~~~~~~i~~~~~~~~~----l~~~~r~ 69 (215)
++...-.+++.|||.. --.++||||+.||+++..|+=-.. ++.. ...++..|+.-.+++.. +.+|.|.
T Consensus 436 ~~~Q~ELiQaAKlAvVGqTmTslaHEinQPLnAmsaYLFsA~~A~e~~~s~qa~~~L~kie~L~eR~~~Iv~sLRqF~Rk 515 (673)
T COG4192 436 KKTQGELIQAAKLAVVGQTMTSLAHEINQPLNAMSAYLFSARLALEEAPSAQAATSLDKIENLTERMGKIVNSLRQFARK 515 (673)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 98778999999899987788888988557568899999987888851745889989998877999999999999999752
Q ss_pred CCCCCCCC--CCCCCCCHHHHHHHH-HHHCCCCCCCC-CCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-CCCCCCCCC-C
Q ss_conf 11223200--000000013444443-22012233211-000000100012344456766468765320-011111235-5
Q gi|254780891|r 70 AFGYTGSV--DSLIGLGDIEQVIED-FIAVDKRVQVS-WTGEKIDLSRERAKILLNLFMVAHASLPRG-GKVTISVQD-S 143 (215)
Q Consensus 70 ~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~qvl~NLi~NA~~a~~~g-g~I~i~~~~-~ 143 (215)
..+..... .........-++++- .-.++++.... ..+-+..++..+.||+.|++.||++|+..- -.|.+.+.. +
T Consensus 516 ~s~~~~lqpV~L~~~v~~AweLl~~khk~rQ~~Li~ptD~~~V~gd~v~ieQVlvNl~~NaldA~~h~~p~i~~~~~~~~ 595 (673)
T COG4192 516 NSSDESLQPVRLNSVVEQAWELLQTKHKRRQIKLINPTDDLMVMGDAVSIEQVLVNLIVNALDASTHFAPWIKLIALGTE 595 (673)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCC
T ss_conf 57778764110999999999999854200024423776530000015649999999999888664157862799864276
Q ss_pred CCCEEEEEEECCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEE
Q ss_conf 7720479998789844024588740545457899872049999999997098799998779926999994
Q gi|254780891|r 144 KNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 (215)
Q Consensus 144 ~~~~~i~V~D~G~Gi~~~e~~~~~~~~~~~~~~~g~GlGl~~~~~i~~~~gG~i~v~~~~~~g~~f~~~l 213 (215)
++..++.|.|+|+|- |.+..+++|.||.++|.-|-|+||.||..+.+++.|++.+.|+-.+++.+.+-+
T Consensus 596 ~e~l~i~i~DnGqGw-p~~l~dkLl~PFttsK~vgLGlGLSIsqSlmeqmqG~l~lAStLt~nA~ViL~f 664 (673)
T COG4192 596 QEMLRIAIIDNGQGW-PHELVDKLLTPFTTSKEVGLGLGLSISQSLMEQMQGRLALASTLTKNAMVILEF 664 (673)
T ss_pred CCCEEEEEECCCCCC-CHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHCCCCCEEEEEE
T ss_conf 421589984489998-456778860776643100555325678999998427444865513574899998
No 43
>PRK13560 hypothetical protein; Provisional
Probab=99.73 E-value=6.5e-16 Score=120.96 Aligned_cols=185 Identities=12% Similarity=0.059 Sum_probs=130.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC--CCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 99977454542279999999999961443014789888999999998631100112--2320000000001344444322
Q gi|254780891|r 17 LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG--YTGSVDSLIGLGDIEQVIEDFI 94 (215)
Q Consensus 17 llas~IaHdlrtPL~~I~~~~elL~~~~~~~~~~~~i~~~~~~~~~l~~~~r~~~~--~~~~~~~~~~~~~~~~~~~~~~ 94 (215)
+|..-|.|-.||+|..|.+.+.+=...-.+++..+.+.++..++..+-..-...+. .....+....+.++..-+....
T Consensus 607 ~LLkEIHHRVKNNLQiIsSLL~LQar~~~d~ear~aL~esq~RI~SmAlVHe~Ly~S~dl~~Id~~~yi~~L~~~L~~s~ 686 (807)
T PRK13560 607 VLLKEIHHRVKNNLQIISSLLDLQAEKLHDEEAKCAFAESQDRICAMALAHEKLYQSEDLADIDFLDYIESLTAHLKNSF 686 (807)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECHHHHHHHHHHHHHHHH
T ss_conf 99998776752039999999998876559999999999999999999999999856999765729999999999999973
Q ss_pred -HCCCCCCCCCCCCCCCCC----HHHHHHHHHHHHHHHHHHH-H--HCCCCCCCCCCC-CCEEEEEEECCCCCCCHHHHH
Q ss_conf -012233211000000100----0123444567664687653-2--001111123557-720479998789844024588
Q gi|254780891|r 95 -AVDKRVQVSWTGEKIDLS----RERAKILLNLFMVAHASLP-R--GGKVTISVQDSK-NENIFSLKINGNLARFPEKFT 165 (215)
Q Consensus 95 -~~~~~~~~~~~~~~~~~~----~~~~qvl~NLi~NA~~a~~-~--gg~I~i~~~~~~-~~~~i~V~D~G~Gi~~~e~~~ 165 (215)
....++.+..+.+...++ .++.-++.+|+.||+||.- . .|.|.|++...+ +.+.+.|+|+|.|++ +.|
T Consensus 687 ~~~~~~I~l~vd~d~~~L~~d~AiPLgLIlnELVtNAlKHAF~~~~~G~I~Isl~~~~~~~v~L~V~DnG~GlP--~~f- 763 (807)
T PRK13560 687 AIDFGRIDCKIDADDGCLDIDKAIPCGLIISELLSNALKHAFPDGAAGNIKVEIREQGDGMVNLCVADDGIGLP--AGF- 763 (807)
T ss_pred CCCCCEEEEEEECCCCEECHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCEEEEEEEECCCCCC--CCC-
T ss_conf 78986389999736705658887679999999999989860899998279999998679989999987981589--998-
Q ss_pred HHHCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEE
Q ss_conf 7405454578998720499999999970987999987799269999941
Q gi|254780891|r 166 QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 (215)
Q Consensus 166 ~~~~~~~~~~~~g~GlGl~~~~~i~~~~gG~i~v~~~~~~g~~f~~~l~ 214 (215)
+. ..+.+|||.|++.++++.+|+|++++ ++|++|++++|
T Consensus 764 ---d~-----~~s~sLGL~LV~~Lv~QL~G~l~i~s--~~Gt~f~I~FP 802 (807)
T PRK13560 764 ---DF-----RAAETLGLQLVCALVKQLDGEIALDS--RGGARFNIRFP 802 (807)
T ss_pred ---CC-----CCCCCCHHHHHHHHHHHCCCEEEEEC--CCCEEEEEEEE
T ss_conf ---97-----88999769999999997498999985--99869999971
No 44
>PRK10547 chemotaxis protein CheA; Provisional
Probab=99.73 E-value=7e-17 Score=127.11 Aligned_cols=129 Identities=12% Similarity=0.121 Sum_probs=101.3
Q ss_pred HHHHHHHHHH-CCCCCCCCCCCCCCCCCHHHH----HHHHHHHHHHHHHH------------HHHCCCCCCCCCCCCCEE
Q ss_conf 3444443220-122332110000001000123----44456766468765------------320011111235577204
Q gi|254780891|r 86 IEQVIEDFIA-VDKRVQVSWTGEKIDLSRERA----KILLNLFMVAHASL------------PRGGKVTISVQDSKNENI 148 (215)
Q Consensus 86 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~----qvl~NLi~NA~~a~------------~~gg~I~i~~~~~~~~~~ 148 (215)
+..++++... .++++++........+++... --|..|+.||++|. |..|+|+++++..++.+.
T Consensus 344 ~~R~VRdlar~~gK~V~L~i~G~dtelDr~Ile~L~dPL~HLlRNAvDHGIE~peeR~a~GKp~~G~I~l~a~~~g~~v~ 423 (662)
T PRK10547 344 FPRLVRDLAGKLGKQVELTLVGSSTELDKSLIERIIDPLTHLVRNSLDHGIELPEKRLAAGKNSVGNLILSAEHQGGNIC 423 (662)
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCEEEHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCEEEEEEEEEECCCEEE
T ss_conf 78999999998698259999668677719999988879999987424304899889987599972799999998599999
Q ss_pred EEEEECCCCCCCH--------------------HHHHHHHCCCCCCC-----CCCCCHHHHHHHHHHHHCCCEEEEEEEC
Q ss_conf 7999878984402--------------------45887405454578-----9987204999999999709879999877
Q gi|254780891|r 149 FSLKINGNLARFP--------------------EKFTQIVDGNVEST-----IDSHDIQFYYVILLAHENKIRLLPEIID 203 (215)
Q Consensus 149 i~V~D~G~Gi~~~--------------------e~~~~~~~~~~~~~-----~~g~GlGl~~~~~i~~~~gG~i~v~~~~ 203 (215)
|+|+|+|.||.++ +.+.=+|.|.|+|. .+|.|+||-+|+.-+++.||+|.++|.+
T Consensus 424 I~v~DDGrGiD~e~Ir~kAv~kGL~~~e~lsd~e~~~LIF~PGFSTa~~Vt~lSGRGVGmDVV~~~v~~l~G~v~v~S~~ 503 (662)
T PRK10547 424 IEVTDDGAGLNRERILAKAASQGLAVSENMSDDEVGMLIFAPGFSTAEQVTDVSGRGVGMDVVKRNIQEMGGHVEIQSKQ 503 (662)
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEEEC
T ss_conf 99981899989999999999849998533899999999717998623223568886646899999999829989999608
Q ss_pred CCCEEEEEEEE
Q ss_conf 99269999941
Q gi|254780891|r 204 DHNVVLSALLE 214 (215)
Q Consensus 204 ~~g~~f~~~l~ 214 (215)
|.||+|++.||
T Consensus 504 G~GT~F~l~lP 514 (662)
T PRK10547 504 GTGTTIRILLP 514 (662)
T ss_pred CCCEEEEEECC
T ss_conf 98079999788
No 45
>COG0643 CheA Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms]
Probab=99.70 E-value=9.3e-16 Score=119.99 Aligned_cols=142 Identities=14% Similarity=0.125 Sum_probs=107.3
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHH-CCCCCCCCCCCCCCCCCHHHH----HHHHHHHHHHHHHH------------HHHCC
Q ss_conf 23200000000013444443220-122332110000001000123----44456766468765------------32001
Q gi|254780891|r 73 YTGSVDSLIGLGDIEQVIEDFIA-VDKRVQVSWTGEKIDLSRERA----KILLNLFMVAHASL------------PRGGK 135 (215)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~----qvl~NLi~NA~~a~------------~~gg~ 135 (215)
..+..+......-.-.++++... .++++++........+++... -=|..|+.||++|. |+.|+
T Consensus 386 ~~RMvP~~~vf~RfpR~VRdla~~lgK~V~L~ieG~~telDksIlE~l~dPL~HLvRNAvDHGIE~pE~R~a~GKp~~G~ 465 (716)
T COG0643 386 KIRMVPFEQVFSRFPRMVRDLARKLGKQVELVIEGEDTELDKSILERLGDPLTHLVRNAVDHGIETPEERRAAGKPEEGT 465 (716)
T ss_pred HHHCEEHHHHHHHCCHHHHHHHHHHCCEEEEEEECCCEEEHHHHHHHHCCCHHHHHHCCHHCCCCCHHHHHHCCCCCCCE
T ss_conf 97000399987444099999999869916999964871342989988646699888500110589889998759898636
Q ss_pred CCCCCCCCCCCEEEEEEECCCCCCCH-----------------------HHHHHHHCCCCCCC-----CCCCCHHHHHHH
Q ss_conf 11112355772047999878984402-----------------------45887405454578-----998720499999
Q gi|254780891|r 136 VTISVQDSKNENIFSLKINGNLARFP-----------------------EKFTQIVDGNVEST-----IDSHDIQFYYVI 187 (215)
Q Consensus 136 I~i~~~~~~~~~~i~V~D~G~Gi~~~-----------------------e~~~~~~~~~~~~~-----~~g~GlGl~~~~ 187 (215)
|+++++.+++++.|+|+|+|.||..+ |.+.-+|.|.|+|. .+|.|+|+=.||
T Consensus 466 I~L~A~~~gn~ivIev~DDG~Gid~ekI~~KAiErGli~~~~a~~lSd~Ei~~LIF~PGFSTa~~VtdvSGRGVGMDVVk 545 (716)
T COG0643 466 ITLSAYHEGNNIVIEVSDDGAGIDREKIREKAIERGLITEEEAETLSDEEILNLIFAPGFSTAEQVTDVSGRGVGMDVVK 545 (716)
T ss_pred EEEEEECCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCCHHHHCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCCHHHHH
T ss_conf 99999837986999995689987999999999982998867752079999998873699873411101657765789999
Q ss_pred HHHHHCCCEEEEEEECCCCEEEEEEEE
Q ss_conf 999970987999987799269999941
Q gi|254780891|r 188 LLAHENKIRLLPEIIDDHNVVLSALLE 214 (215)
Q Consensus 188 ~i~~~~gG~i~v~~~~~~g~~f~~~l~ 214 (215)
.-+++.||+|+++|..|.||+|++.||
T Consensus 546 ~~I~~LgG~I~V~S~~G~GT~Fti~LP 572 (716)
T COG0643 546 TNIEQLGGSISVSSEPGKGTTFTIRLP 572 (716)
T ss_pred HHHHHCCCEEEEEECCCCCEEEEEECC
T ss_conf 999973998999962789769999668
No 46
>PRK10935 nitrate/nitrite sensor protein NarQ; Provisional
Probab=99.67 E-value=4.7e-15 Score=115.54 Aligned_cols=176 Identities=11% Similarity=0.058 Sum_probs=108.9
Q ss_pred HHHHHHHHHHHHHHHHHHH----HHHH----CCCCHHHHHHHHHHHHH-------HHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 7745454227999999999----9961----44301478988899999-------9998631100112232000000000
Q gi|254780891|r 20 SRICHDIISPIGAIHNSLE----LLDE----VGIEDEVMQLIRLSSMS-------AIIRLKFMRLAFGYTGSVDSLIGLG 84 (215)
Q Consensus 20 s~IaHdlrtPL~~I~~~~e----lL~~----~~~~~~~~~~i~~~~~~-------~~~l~~~~r~~~~~~~~~~~~~~~~ 84 (215)
++|||||..+|+-..+++. +|+. ....++..+.+.+..+. +..++.-+|.. .+......
T Consensus 366 ~~IARELHDsLaQ~Ls~lkiq~~lL~~~l~~~~~~~~~~~~l~~i~~~l~~a~~qlReLl~~fRl~------l~~~~L~~ 439 (568)
T PRK10935 366 ATIARELHDSLAQVLSYLKIQLTLLKRSLPKSCDNAKAESIIADFDEGLSDAYRQLRELLTTFRLT------IQEANLGS 439 (568)
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC------CCCCCHHH
T ss_conf 899998441266578999999999998742256538899999999999999999999999983226------77568799
Q ss_pred HHHHHHHHHHHC-CCCCCCCCCCCCCCCCH----HHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-CCCEEEEEEECCCCC
Q ss_conf 134444432201-22332110000001000----123444567664687653200111112355-772047999878984
Q gi|254780891|r 85 DIEQVIEDFIAV-DKRVQVSWTGEKIDLSR----ERAKILLNLFMVAHASLPRGGKVTISVQDS-KNENIFSLKINGNLA 158 (215)
Q Consensus 85 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~----~~~qvl~NLi~NA~~a~~~gg~I~i~~~~~-~~~~~i~V~D~G~Gi 158 (215)
.+...+..+... ...+.++...+....+. .+.|++.+.+.|++||.. .+.|+|++... ++.+.++|+|+|.|+
T Consensus 440 AL~~~~~~~~~q~~~~i~l~~~l~~~~l~~~~~i~llrIvqEALtN~~KHA~-A~~V~V~~~~~~~~~v~l~V~DnG~Gf 518 (568)
T PRK10935 440 ALEEMLDQLRNQTSAKITLDCRLPSQALDAQQQVHLLQIIREATLNAIKHAN-ASEIAVSCVTNPDGEVTVSIRDDGVGI 518 (568)
T ss_pred HHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC-CCEEEEEEEECCCCEEEEEEEECCCCC
T ss_conf 9999999997511946999706887778888999999999999999998089-987999999748987999997799478
Q ss_pred CCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEEC
Q ss_conf 402458874054545789987204999999999709879999877992699999419
Q gi|254780891|r 159 RFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 (215)
Q Consensus 159 ~~~e~~~~~~~~~~~~~~~g~GlGl~~~~~i~~~~gG~i~v~~~~~~g~~f~~~l~~ 215 (215)
. +.. ... .++||.+.++-|+..||++.++|.+|+||++++++|.
T Consensus 519 ~-~~~-----------~~~-~h~GL~iMrERa~~lgG~l~i~s~p~~GT~V~l~~P~ 562 (568)
T PRK10935 519 G-ELK-----------EPE-GHYGLNIMHERASRLGGTLTFSQNPGGGTTVSLTFPS 562 (568)
T ss_pred C-CCC-----------CCC-CCCCHHHHHHHHHHCCCEEEEEECCCCCEEEEEEECC
T ss_conf 9-878-----------889-9857599999999669989999779996699998589
No 47
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional
Probab=99.52 E-value=3e-12 Score=97.72 Aligned_cols=195 Identities=14% Similarity=0.121 Sum_probs=130.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH----HHHCCCCCCCCCCCCCCCCHHH-HHHH
Q ss_conf 9997745454227999999999996144301478988899999999863----1100112232000000000134-4444
Q gi|254780891|r 17 LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLK----FMRLAFGYTGSVDSLIGLGDIE-QVIE 91 (215)
Q Consensus 17 llas~IaHdlrtPL~~I~~~~elL~~~~~~~~~~~~i~~~~~~~~~l~~----~~r~~~~~~~~~~~~~~~~~~~-~~~~ 91 (215)
.|-..+++||+.|+..+...+.-|.....++ .+..+...+..+.++++ .-+++.....+....+.+.++. +++.
T Consensus 452 ~~l~Ni~~el~~Pl~~l~~~~~~l~~~~~~~-~l~~L~~qs~~i~~lidnI~Lln~LEsq~W~~~~~~Fsl~~Lid~~l~ 530 (881)
T PRK10618 452 AFLQNIGDELKEPVQSLAELAAQLNAPESQQ-LLKQLAEQADVLVRLIDNIQLANMLENDEWKSEQTLFSLQDLIDEVVP 530 (881)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
T ss_conf 9999999998778999999999862524467-999999999999999988999988860567656771049999999999
Q ss_pred HHHH----CCCCCCCCCCCCC----CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC---CCCEEEEEEECCCCCCC
Q ss_conf 3220----1223321100000----01000123444567664687653200111112355---77204799987898440
Q gi|254780891|r 92 DFIA----VDKRVQVSWTGEK----IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDS---KNENIFSLKINGNLARF 160 (215)
Q Consensus 92 ~~~~----~~~~~~~~~~~~~----~~~~~~~~qvl~NLi~NA~~a~~~gg~I~i~~~~~---~~~~~i~V~D~G~Gi~~ 160 (215)
+.+. ++...-+...++. ..++..+.+++.=|+.=|+.-+.- |+|++++..+ .+.+.|.|.|+|.|++
T Consensus 531 e~Lp~i~~KGL~L~~hn~l~~~~~~~gD~~aLrkil~lLl~YaitTT~~-GKItl~v~~~~~~~~~l~i~i~DTG~Gls- 608 (881)
T PRK10618 531 EVLPAIKRKGLQLLIHNHLKANDMRRGDRDALRKILLLLLQYAVTTTQY-GKITLEVDQDESSEERLTFRILDTGEGVS- 608 (881)
T ss_pred HHHHHHHHCCCEEEEECCCCHHHHCCCCHHHHHHHHHHHHHHHHHCCCC-CEEEEEEECCCCCCCEEEEEEECCCCCCC-
T ss_conf 8768987427033323479889970478999999999999888111445-25999982587778638999954788878-
Q ss_pred HHHHHHHHCCCCC-----CCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEE
Q ss_conf 2458874054545-----78998720499999999970987999987799269999941
Q gi|254780891|r 161 PEKFTQIVDGNVE-----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 (215)
Q Consensus 161 ~e~~~~~~~~~~~-----~~~~g~GlGl~~~~~i~~~~gG~i~v~~~~~~g~~f~~~l~ 214 (215)
+++...+-.||.. +-..++|+-+|+|+++|...||++.+.+.++=||.++++||
T Consensus 609 ~~El~Nl~~PFl~~t~~Dry~~~SGlTf~LC~qLc~KlgG~l~I~Sk~~iGT~Y~i~lp 667 (881)
T PRK10618 609 IHEIDNLHFPFLNQTQGDRYGKASGLTFWLCNQLCRKLGGHLNIKSREDLGTRYSVHLK 667 (881)
T ss_pred HHHHHHCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHCCEEEEECCCCCCCCEEEEEC
T ss_conf 88885537977683122111378872999999999984896788415677664799842
No 48
>PRK10600 nitrate/nitrite sensor protein NarX; Provisional
Probab=99.51 E-value=5e-12 Score=96.27 Aligned_cols=178 Identities=12% Similarity=0.052 Sum_probs=116.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHH-------HHHHHHHHHHCCCCCCCCCCCCCCCCHHHH
Q ss_conf 99774545422799999999999614--430147898889999-------999986311001122320000000001344
Q gi|254780891|r 18 LCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSM-------SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ 88 (215)
Q Consensus 18 las~IaHdlrtPL~~I~~~~elL~~~--~~~~~~~~~i~~~~~-------~~~~l~~~~r~~~~~~~~~~~~~~~~~~~~ 88 (215)
+|.-+-..|...|+.++.-+++|... ...++..+.+.+... .+..++.-+|.. .+.......+..
T Consensus 365 IARELHDslaQ~Ls~Lkiq~~~l~~~~~~~~~~~~~~l~~i~~~~~~a~~~lReLl~~fR~~------l~~~~l~~aL~~ 438 (569)
T PRK10600 365 IARELHDSIAQSLSCMKMQVSCLQMQGDALPESSRELLSQIRNELNASWAQLRELLTTFRLQ------LTEPGLRPALEA 438 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC------CCCCCHHHHHHH
T ss_conf 99998888722278999999999973057988899999999999999999999999983557------775667999999
Q ss_pred HHHHHHHC-CCCCCCCCCCCCCCCCH----HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCHHH
Q ss_conf 44432201-22332110000001000----12344456766468765320011111235577204799987898440245
Q gi|254780891|r 89 VIEDFIAV-DKRVQVSWTGEKIDLSR----ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 (215)
Q Consensus 89 ~~~~~~~~-~~~~~~~~~~~~~~~~~----~~~qvl~NLi~NA~~a~~~gg~I~i~~~~~~~~~~i~V~D~G~Gi~~~e~ 163 (215)
.+..+... +..++++.+.+....|. .+.|++..-+.|++||.. ...|+|++..+++.+.+.|+|+|.|++ +.
T Consensus 439 ~i~~~~~~~g~~i~l~~~~~~~~l~~~~~i~l~rIvqEALsNv~KHA~-A~~v~V~l~~~~~~~~l~I~DdG~Gf~-~~- 515 (569)
T PRK10600 439 SCEEFSARFGFPVKLDYQLPPRLVPSHQAIHLLQIAREALSNALKHAQ-ASEVVVTVAQNDNQVKLSVQDNGCGVP-EN- 515 (569)
T ss_pred HHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC-CCEEEEEEEECCCEEEEEEEECCCCCC-CC-
T ss_conf 999999760977999955886679878999999999999999997089-987999999769989999988998989-88-
Q ss_pred HHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEEC
Q ss_conf 8874054545789987204999999999709879999877992699999419
Q gi|254780891|r 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 (215)
Q Consensus 164 ~~~~~~~~~~~~~~g~GlGl~~~~~i~~~~gG~i~v~~~~~~g~~f~~~l~~ 215 (215)
...+.+.||.+.++=|+..||++.+++.+++||++++++|.
T Consensus 516 -----------~~~~~h~GL~iMrERa~~lgG~l~i~s~p~~GT~V~l~f~P 556 (569)
T PRK10600 516 -----------AERSNHYGLIIMRDRAQSLRGDCSVRRRESGGTEVVVTFIP 556 (569)
T ss_pred -----------CCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCEEEEEEECC
T ss_conf -----------88899978159999999769989998669995899999758
No 49
>COG2972 Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]
Probab=99.49 E-value=3.4e-12 Score=97.37 Aligned_cols=188 Identities=15% Similarity=0.075 Sum_probs=117.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHH
Q ss_conf 96768799999774545422799999999999614430147898889999999986311001122320000000001344
Q gi|254780891|r 9 LSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ 88 (215)
Q Consensus 9 ~~~~~laallas~IaHdlrtPL~~I~~~~elL~~~~~~~~~~~~i~~~~~~~~~l~~~~r~~~~~~~~~~~~~~~~~~~~ 88 (215)
....++.++=+--.-|.+.|-|.+|...++.-. . +..++.+..+.+++|...... .+......+ ..
T Consensus 253 ~~~~el~~lqsqi~pHfL~NtL~~I~~~~~~~~----~-------~~~~~~v~~l~~llR~~l~~~--~~~~~l~~E-~~ 318 (456)
T COG2972 253 QLEAELRALQSQINPHFLYNTLETIRMLAEEDD----P-------EEAAKVVKALSKLLRYSLSNL--DNIVTLEIE-LL 318 (456)
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC----H-------HHHHHHHHHHHHHHHHHHHCC--CCCCCHHHH-HH
T ss_conf 999999997721261689999999999987357----9-------999999999999999750065--553419999-99
Q ss_pred HHHHHHH-----CCCCCCCCCCCCCCCCC-HHHHHHHHHHHHHHHHHH----HHHCCCCCCCCCCCCCEEEEEEECCCCC
Q ss_conf 4443220-----12233211000000100-012344456766468765----3200111112355772047999878984
Q gi|254780891|r 89 VIEDFIA-----VDKRVQVSWTGEKIDLS-RERAKILLNLFMVAHASL----PRGGKVTISVQDSKNENIFSLKINGNLA 158 (215)
Q Consensus 89 ~~~~~~~-----~~~~~~~~~~~~~~~~~-~~~~qvl~NLi~NA~~a~----~~gg~I~i~~~~~~~~~~i~V~D~G~Gi 158 (215)
+++.++. -..++++.++.+....+ .....++..|+.||+.|. +++|.|.|.+..+++.+.++|+|+|+||
T Consensus 319 ~~~kyl~iq~~r~~~~le~~~~i~~~~~~l~~p~l~lqpLvENAi~hgi~~~~~~~~I~i~~~~~~~~i~i~i~Dng~g~ 398 (456)
T COG2972 319 LIEKYLEIQKLRIGDRLEVPLPIDEELEPLIDPKLVLQPLVENAIEHGIEPKRPGGSIAISAKKQDDVIQISISDNGPGI 398 (456)
T ss_pred HHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCEEEEEECCCCCCC
T ss_conf 99999999981998799997203753320232788988879999998620469995799999405879999977699995
Q ss_pred CCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCE--EEEEEECCCCEEEEEEEEC
Q ss_conf 40245887405454578998720499999999970987--9999877992699999419
Q gi|254780891|r 159 RFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIR--LLPEIIDDHNVVLSALLEK 215 (215)
Q Consensus 159 ~~~e~~~~~~~~~~~~~~~g~GlGl~~~~~i~~~~gG~--i~v~~~~~~g~~f~~~l~~ 215 (215)
. ++....+......+ +|+||.=++...+.|-|. +.+++.+++|+++++++|+
T Consensus 399 ~-~~~~~~~~~~~~~r----~giGL~Nv~~rl~~~~g~~~~~i~s~~~~gt~v~~~~~~ 452 (456)
T COG2972 399 D-EEKLEGLSTKGENR----SGIGLSNVKERLKLYFGEPGLSIDSQPGKGTFVQIIIPK 452 (456)
T ss_pred C-HHHHHHHHHCCCCC----CCCCHHHHHHHHHHCCCCCCEEEEEECCCCEEEEEEEEH
T ss_conf 8-78886676415777----773588799999871897621799964895899999863
No 50
>COG4585 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=99.37 E-value=5.1e-11 Score=89.86 Aligned_cols=89 Identities=9% Similarity=-0.009 Sum_probs=76.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 00123444567664687653200111112355772047999878984402458874054545789987204999999999
Q gi|254780891|r 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAH 191 (215)
Q Consensus 112 ~~~~~qvl~NLi~NA~~a~~~gg~I~i~~~~~~~~~~i~V~D~G~Gi~~~e~~~~~~~~~~~~~~~g~GlGl~~~~~i~~ 191 (215)
...+.|++.-.+.||++|.. ..++.|+....++.+.++|.|+|.|..+++. . .|+||.=.++=++
T Consensus 277 e~~l~rivQEaltN~~rHa~-A~~v~V~l~~~~~~l~l~V~DnG~Gf~~~~~-------------~-~~~GL~~mreRv~ 341 (365)
T COG4585 277 EDALFRIVQEALTNAIRHAQ-ATEVRVTLERTDDELRLEVIDNGVGFDPDKE-------------G-GGFGLLGMRERVE 341 (365)
T ss_pred HHHHHHHHHHHHHHHHHCCC-CCEEEEEEEECCCEEEEEEEECCCCCCCCCC-------------C-CCCCHHHHHHHHH
T ss_conf 99999999999989987578-4569999998298899999989978897645-------------7-7766766999999
Q ss_pred HCCCEEEEEEECCCCEEEEEEEEC
Q ss_conf 709879999877992699999419
Q gi|254780891|r 192 ENKIRLLPEIIDDHNVVLSALLEK 215 (215)
Q Consensus 192 ~~gG~i~v~~~~~~g~~f~~~l~~ 215 (215)
..||++.++|.+|+|+++++.+|.
T Consensus 342 ~lgG~l~i~S~~g~Gt~i~i~lPl 365 (365)
T COG4585 342 ALGGTLTIDSAPGQGTTVTITLPL 365 (365)
T ss_pred HCCCEEEEEECCCCCEEEEEEEEC
T ss_conf 869989998559997799999509
No 51
>PRK11644 sensory histidine kinase UhpB; Provisional
Probab=99.31 E-value=3.5e-10 Score=84.55 Aligned_cols=172 Identities=16% Similarity=0.123 Sum_probs=109.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCH----HHHHHHHHHHHHH----HHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 45454227999999999996144301----4789888999999----998631100112232000000000134444432
Q gi|254780891|r 22 ICHDIISPIGAIHNSLELLDEVGIED----EVMQLIRLSSMSA----IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDF 93 (215)
Q Consensus 22 IaHdlrtPL~~I~~~~elL~~~~~~~----~~~~~i~~~~~~~----~~l~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (215)
+=-|+-.-||+|+..+..++....++ +..+.|+..+.++ .++...+|.. ..+.--....+..++.++
T Consensus 311 LHDEiGQ~LTAIr~~a~~i~r~~~~~~~~~~~a~~I~~l~~~i~~~vR~ll~~LRP~-----~LDdLGL~~AL~~Lv~e~ 385 (497)
T PRK11644 311 LHDEIGQTITAIRTQASIVKRLAADNASVKQSGQLIEQLSLGVYDAVRRLLGRLRPR-----QLDDLTLEQAIRSLMREL 385 (497)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-----CHHHCCHHHHHHHHHHHH
T ss_conf 000340599999999999863269976689999999999999999999999860903-----111248999999999987
Q ss_pred HH--CCCCCCCCCCCCCCCCCH----HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHH
Q ss_conf 20--122332110000001000----123444567664687653200111112355772047999878984402458874
Q gi|254780891|r 94 IA--VDKRVQVSWTGEKIDLSR----ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 (215)
Q Consensus 94 ~~--~~~~~~~~~~~~~~~~~~----~~~qvl~NLi~NA~~a~~~gg~I~i~~~~~~~~~~i~V~D~G~Gi~~~e~~~~~ 167 (215)
.. .+.++.++++.+....+. .+.|++.--+.|++||... .+|.|++...++.+.+.|+|+|.|+. ++.
T Consensus 386 ~~~~~gi~~~l~~~~~~~~L~~~~~itlYRIvQEaLTNi~KHA~A-~~V~I~L~~~~~~l~L~I~DDG~Gf~-~~~---- 459 (497)
T PRK11644 386 ELEDRGIVSHLDWQIDESALSETQRVTLFRVCQEGLNNIVKHADA-SAVTIQGWQQDERLMLVIEDNGSGLP-PGS---- 459 (497)
T ss_pred HHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC-CEEEEEEEECCCEEEEEEEECCCCCC-CCC----
T ss_conf 652579559998268766798246889999999999999973788-76999999769989999988998989-898----
Q ss_pred HCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEEC
Q ss_conf 054545789987204999999999709879999877992699999419
Q gi|254780891|r 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 (215)
Q Consensus 168 ~~~~~~~~~~g~GlGl~~~~~i~~~~gG~i~v~~~~~~g~~f~~~l~~ 215 (215)
...|+||.-.++=++..||++.++|. .||+++++||+
T Consensus 460 ---------~~~G~GL~GMrERV~aLGG~l~I~S~--~GT~I~V~LP~ 496 (497)
T PRK11644 460 ---------GQQGFGLRGMQERVSALGGTLTISCT--HGTRLSVTLPQ 496 (497)
T ss_pred ---------CCCCCCCHHHHHHHHHCCCEEEEEEC--CCCEEEEECCC
T ss_conf ---------99998926799999974997999828--99779995899
No 52
>COG3850 NarQ Signal transduction histidine kinase, nitrate/nitrite-specific [Signal transduction mechanisms]
Probab=99.29 E-value=9.2e-10 Score=81.91 Aligned_cols=181 Identities=11% Similarity=0.071 Sum_probs=118.8
Q ss_pred HHHHHHHHHHHHHHHHHHH----HHHHC---CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC-CCCCCCCCHHHHHHH
Q ss_conf 7745454227999999999----99614---430147898889999999986311001122320-000000001344444
Q gi|254780891|r 20 SRICHDIISPIGAIHNSLE----LLDEV---GIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGS-VDSLIGLGDIEQVIE 91 (215)
Q Consensus 20 s~IaHdlrtPL~~I~~~~e----lL~~~---~~~~~~~~~i~~~~~~~~~l~~~~r~~~~~~~~-~~~~~~~~~~~~~~~ 91 (215)
+-||-||---|+-..+|+. +|+-. +..++..+.|...-..++.--+.+|...-.+.. .........+...+.
T Consensus 374 atIAReLHDSiAQsLS~LkiQvt~L~~~~~~~~~e~s~~~i~~~r~~Ln~~Y~QLRELLtTFRltL~e~~L~~AL~~~~~ 453 (574)
T COG3850 374 ATIARELHDSIAQSLSFLKIQVTLLKTAIPEELPEKAREIIAQIRQGLNDAYRQLRELLTTFRLTLQEAELPPALEQMLA 453 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf 99999877899999999999999998427865668799999999999999999999999987876056763899999999
Q ss_pred HHHHC-CCCCCCCCCCCCCCCCHH----HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHH
Q ss_conf 32201-223321100000010001----2344456766468765320011111235577204799987898440245887
Q gi|254780891|r 92 DFIAV-DKRVQVSWTGEKIDLSRE----RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 (215)
Q Consensus 92 ~~~~~-~~~~~~~~~~~~~~~~~~----~~qvl~NLi~NA~~a~~~gg~I~i~~~~~~~~~~i~V~D~G~Gi~~~e~~~~ 166 (215)
.+... +..+++++..+....|.+ +.|++.--+.||+||.. +..|.|++...++.+.+.|+|+|.||+ +.
T Consensus 454 ~f~~qtg~~~~l~~qlp~~~lpa~qqvHlLqIvREAlsNa~KHa~-As~i~V~~~~~~g~~~~~VeDnG~Gi~-~~---- 527 (574)
T COG3850 454 EFSNQTGITVTLDYQLPPRALPAHQQVHLLQIVREALSNAIKHAQ-ASEIKVTVSQNDGQVTLTVEDNGVGID-EA---- 527 (574)
T ss_pred HHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC-CCEEEEEEEECCCEEEEEEEECCCCCC-CC----
T ss_conf 997346973887256898899878999999999999998998526-675899998659648999942883779-75----
Q ss_pred HHCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEE
Q ss_conf 405454578998720499999999970987999987799269999941
Q gi|254780891|r 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 (215)
Q Consensus 167 ~~~~~~~~~~~g~GlGl~~~~~i~~~~gG~i~v~~~~~~g~~f~~~l~ 214 (215)
....| ..||-|.++=|+..||.+.+++.+++||.++++++
T Consensus 528 -------~e~~g-HyGL~IM~ERA~~L~~~L~i~~~~~gGT~V~ltf~ 567 (574)
T COG3850 528 -------AEPSG-HYGLNIMRERAQRLGGQLRIRRREGGGTEVSLTFP 567 (574)
T ss_pred -------CCCCC-CCCHHHHHHHHHHHCCEEEEEECCCCCEEEEEEEC
T ss_conf -------67788-72369999999972575777645999817999956
No 53
>COG3920 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=99.14 E-value=2.1e-08 Score=73.21 Aligned_cols=183 Identities=15% Similarity=0.063 Sum_probs=117.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC-CCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 999774545422799999999999614430147898889999999986311001122-3200000000013444443220
Q gi|254780891|r 17 LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGY-TGSVDSLIGLGDIEQVIEDFIA 95 (215)
Q Consensus 17 llas~IaHdlrtPL~~I~~~~elL~~~~~~~~~~~~i~~~~~~~~~l~~~~r~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 95 (215)
++..-|-|-+||-|+.|.+.+.+-.....++ ..+...+...++..|-..-...+.. ............+...+..+.
T Consensus 21 ~ll~Ei~HRVKNnLqiIsSll~lq~r~~~~~-~~e~~~~~~~Ri~sla~~He~L~~s~~~~~~~~~y~~~L~~~l~~~~- 98 (221)
T COG3920 21 LLLREIHHRVKNNLQIISSLLRLQARKFEDE-VLEALRESQNRIQSLALIHELLYKSGDDTWDFASYLELLASNLFPSY- 98 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHC-
T ss_conf 9999999998879999999999777523667-89999999889999999999980688651759999999999988762-
Q ss_pred CCCCCCCCCCCCC-CCCC----HHHHHHHHHHHHHHHHHHHH---HCCCCCCCCCCCCC--EEEEEEECCCCCCCHHHHH
Q ss_conf 1223321100000-0100----01234445676646876532---00111112355772--0479998789844024588
Q gi|254780891|r 96 VDKRVQVSWTGEK-IDLS----RERAKILLNLFMVAHASLPR---GGKVTISVQDSKNE--NIFSLKINGNLARFPEKFT 165 (215)
Q Consensus 96 ~~~~~~~~~~~~~-~~~~----~~~~qvl~NLi~NA~~a~~~---gg~I~i~~~~~~~~--~~i~V~D~G~Gi~~~e~~~ 165 (215)
....+.+.....+ ...+ ..+.-++.-|+.||+||.-. +|.|.|++...++. ..+.|+|+|.|++ +..
T Consensus 99 ~~~~~~~~~~~~~~~~l~~d~A~~Lgliv~EL~tNa~Khaf~~~~~G~I~I~~~~~~~~~~~~l~v~deg~G~~--~~~- 175 (221)
T COG3920 99 GGKDIRLILDSGPNVFLDPDTAVPLGLIVHELVTNALKHAFLSRPGGEIRITLSREGDGGRFLLTVWDEGGGPP--VEA- 175 (221)
T ss_pred CCCCCEEEEECCCCEEECHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCEEEEEEEECCCCCC--CCC-
T ss_conf 78875278822886226736788999999999998898617888997799999984799717999987898988--888-
Q ss_pred HHHCCCCCCCCCCCCHHHHHHHHHH-HHCCCEEEEEEECCCCEEEEEEEEC
Q ss_conf 7405454578998720499999999-9709879999877992699999419
Q gi|254780891|r 166 QIVDGNVESTIDSHDIQFYYVILLA-HENKIRLLPEIIDDHNVVLSALLEK 215 (215)
Q Consensus 166 ~~~~~~~~~~~~g~GlGl~~~~~i~-~~~gG~i~v~~~~~~g~~f~~~l~~ 215 (215)
.. ...|+|+.++..++ ++.||.+.....+ |++|++..|.
T Consensus 176 --------~~-~~~g~G~~Lv~~lv~~q~~g~~~~~~~~--Gt~~~i~~~~ 215 (221)
T COG3920 176 --------PL-SRGGFGLQLVERLVPEQLGGELEDERPD--GTEFRLRFPL 215 (221)
T ss_pred --------CC-CCCCCHHHHHHHHHHHHCCCEEEEECCC--CEEEEEEEEC
T ss_conf --------87-8998379999999999679727997499--7799999886
No 54
>PRK03660 anti-sigma F factor; Provisional
Probab=99.12 E-value=4.5e-10 Score=83.89 Aligned_cols=92 Identities=9% Similarity=-0.002 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHHHHH---HHHCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHCCCCCCCC--CCCCHHHHHHHHH
Q ss_conf 2344456766468765---3200111112355772047999878984402458874054545789--9872049999999
Q gi|254780891|r 115 RAKILLNLFMVAHASL---PRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILL 189 (215)
Q Consensus 115 ~~qvl~NLi~NA~~a~---~~gg~I~i~~~~~~~~~~i~V~D~G~Gi~~~e~~~~~~~~~~~~~~--~g~GlGl~~~~~i 189 (215)
+.-++...+.||++|. .++|.|.|.+...++.+.|.|+|+|+||. .+...+.|+++++. .++|+||++.+.+
T Consensus 40 i~lAV~EA~tNaI~H~y~~~~~g~I~I~~~~~~~~l~I~V~D~G~Gid---~~~~~~~P~~t~~~~~~~~GlGl~li~~L 116 (146)
T PRK03660 40 IKTAVSEAVTNAIIHGYENNPDGIVYIEAEIEDEELEITVRDEGKGIE---DVEEARQPLFTTKPELERSGMGFTFMESF 116 (146)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCEEEEEEEECCCCCC---CHHHCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 999999999999986036799927999999809999999997378947---37664388776687667564058999983
Q ss_pred HHHCCCEEEEEEECCCCEEEEEEE
Q ss_conf 997098799998779926999994
Q gi|254780891|r 190 AHENKIRLLPEIIDDHNVVLSALL 213 (215)
Q Consensus 190 ~~~~gG~i~v~~~~~~g~~f~~~l 213 (215)
. .++++++.++.|++|+++-
T Consensus 117 m----DeVei~s~~g~GTtV~m~k 136 (146)
T PRK03660 117 M----DEVEVESEPGKGTTIRMKK 136 (146)
T ss_pred C----CEEEEEECCCCCEEEEEEE
T ss_conf 8----8699995599978999999
No 55
>COG3851 UhpB Signal transduction histidine kinase, glucose-6-phosphate specific [Signal transduction mechanisms]
Probab=98.91 E-value=2.1e-07 Score=66.96 Aligned_cols=180 Identities=12% Similarity=0.090 Sum_probs=117.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHH-
Q ss_conf 99774545422799999999999614---43014789888999999998631100112232000000000134444432-
Q gi|254780891|r 18 LCSRICHDIISPIGAIHNSLELLDEV---GIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDF- 93 (215)
Q Consensus 18 las~IaHdlrtPL~~I~~~~elL~~~---~~~~~~~~~i~~~~~~~~~l~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~- 93 (215)
+|.-+--||-.-+|+|+.-+.+.+.- +..+.....|++-+.++.+-.+-+.. .-++...+.-.....+.+++++.
T Consensus 306 vARELHDeIGQnITAIr~Qa~ivkR~~~~~q~kqaas~Ie~LslrI~~svrqLL~-rLRP~~LDdL~l~qai~~l~~Em~ 384 (497)
T COG3851 306 VARELHDEIGQNITAIRTQAGIVKRAADNAQVKQAASLIEQLSLRIYDSVRQLLG-RLRPRQLDDLTLEQAIRSLLREME 384 (497)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 9999899864607899999999986579777887889999999899999999987-159732222578999999999852
Q ss_pred -HHCCCCCCCCCCCCCCCCCH----HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHH
Q ss_conf -20122332110000001000----1234445676646876532001111123557720479998789844024588740
Q gi|254780891|r 94 -IAVDKRVQVSWTGEKIDLSR----ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 (215)
Q Consensus 94 -~~~~~~~~~~~~~~~~~~~~----~~~qvl~NLi~NA~~a~~~gg~I~i~~~~~~~~~~i~V~D~G~Gi~~~e~~~~~~ 168 (215)
..+++++.++|.+.....+. -+.|+..-+++|-+||.+ ...|+|....+++.+.++|+|+|.|++ +.
T Consensus 385 ~~ergihcq~~~~~n~~~ldet~rvTLyRl~QE~LNNI~KHA~-AS~V~i~l~~~~e~l~Lei~DdG~Gl~-~~------ 456 (497)
T COG3851 385 LEERGIHCQLDWRINETALDETQRVTLYRLCQELLNNICKHAD-ASAVTIQLWQQDERLMLEIEDDGSGLP-PG------ 456 (497)
T ss_pred HHHCCEEEEEECCCCCCCCCCCEEEEHHHHHHHHHHHHHHCCC-CCEEEEEEEECCCEEEEEEECCCCCCC-CC------
T ss_conf 5445627987056676678854377289999999999975002-262799995178189999825886789-99------
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEEC
Q ss_conf 54545789987204999999999709879999877992699999419
Q gi|254780891|r 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 (215)
Q Consensus 169 ~~~~~~~~~g~GlGl~~~~~i~~~~gG~i~v~~~~~~g~~f~~~l~~ 215 (215)
.+-.|.|+-=.++=+...||+++.++ -.||.+.+.||+
T Consensus 457 -------~~v~G~Gl~GmrERVsaLGG~l~lss--q~GTrviVnLPq 494 (497)
T COG3851 457 -------SGVQGFGLTGMRERVSALGGTLTLSS--QHGTRVIVNLPQ 494 (497)
T ss_pred -------CCCCCCCCCHHHHHHHHHCCCEEEEE--CCCCEEEEECCH
T ss_conf -------98567572008999997478258874--368589994603
No 56
>COG4564 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=98.87 E-value=9.2e-08 Score=69.21 Aligned_cols=105 Identities=14% Similarity=0.060 Sum_probs=80.5
Q ss_pred CCCCCCCCCCCCCC----CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHCCCCC
Q ss_conf 23321100000010----00123444567664687653200111112355772047999878984402458874054545
Q gi|254780891|r 98 KRVQVSWTGEKIDL----SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE 173 (215)
Q Consensus 98 ~~~~~~~~~~~~~~----~~~~~qvl~NLi~NA~~a~~~gg~I~i~~~~~~~~~~i~V~D~G~Gi~~~e~~~~~~~~~~~ 173 (215)
..+++..+..+... ...+.|+..--+.|--+|. +..+|+|.....++.+.+.|+|+|+|++..+.
T Consensus 339 ~~itle~~~~p~~l~~e~~talyRv~QEaltNIErHa-~Atrv~ill~~~~d~vql~vrDnG~GF~~~~~---------- 407 (459)
T COG4564 339 IEITLEFDTQPGKLKPEVATALYRVVQEALTNIERHA-GATRVTILLQQMGDMVQLMVRDNGVGFSVKEA---------- 407 (459)
T ss_pred EEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHC-CCEEEEEEECCCCCCEEEEEECCCCCCCCHHH----------
T ss_conf 3799970578644782788899999999987788606-87179998615776069998238998561653----------
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEEC
Q ss_conf 789987204999999999709879999877992699999419
Q gi|254780891|r 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 (215)
Q Consensus 174 ~~~~g~GlGl~~~~~i~~~~gG~i~v~~~~~~g~~f~~~l~~ 215 (215)
..+.+||||.=.++=....||++.++|.+. ||.+++.||+
T Consensus 408 -~~~~~GiGLRNMrERma~~GG~~~v~s~p~-GTel~v~Lp~ 447 (459)
T COG4564 408 -LQKRHGIGLRNMRERMAHFGGELEVESSPQ-GTELTVLLPL 447 (459)
T ss_pred -CCCCCCCCCCCHHHHHHHHCCEEEEEECCC-CCEEEEEECC
T ss_conf -167556451009999997486589975698-7279998140
No 57
>COG3275 LytS Putative regulator of cell autolysis [Signal transduction mechanisms]
Probab=98.85 E-value=1.9e-07 Score=67.14 Aligned_cols=182 Identities=18% Similarity=0.147 Sum_probs=105.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHCCC-------CHH----HHH----HHHH----HHHHHHHHHHHHHCCCCCCCC
Q ss_conf 99774545422799999999--99961443-------014----789----8889----999999986311001122320
Q gi|254780891|r 18 LCSRICHDIISPIGAIHNSL--ELLDEVGI-------EDE----VMQ----LIRL----SSMSAIIRLKFMRLAFGYTGS 76 (215)
Q Consensus 18 las~IaHdlrtPL~~I~~~~--elL~~~~~-------~~~----~~~----~i~~----~~~~~~~l~~~~r~~~~~~~~ 76 (215)
|+-++||.+-+-+-.-..-. +++.+.+- .+. .+. .|+. .-+.+.++..|+|......
T Consensus 335 la~Gia~l~SaQie~ge~e~q~~ll~~AEik~LqaQvnPHFLFNaLNTIsa~IR~npdkAreLil~LS~yfR~NL~~~-- 412 (557)
T COG3275 335 LAEGIAQLLSAQIEAGEAERQRELLKQAEIKALQAQVNPHFLFNALNTISAVIRRNPDKARELILYLSTYFRYNLENN-- 412 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCC--
T ss_conf 999999999879997589999999889999999860370888888887788861782799999999999999873478--
Q ss_pred CCCCCCCCHHHHHHHHHHH-----CCCCCCCCCCCCCCCCCHHHH-HHHHHHHHHHHHHH----HHHCCCCCCCCCCCCC
Q ss_conf 0000000013444443220-----122332110000001000123-44456766468765----3200111112355772
Q gi|254780891|r 77 VDSLIGLGDIEQVIEDFIA-----VDKRVQVSWTGEKIDLSRERA-KILLNLFMVAHASL----PRGGKVTISVQDSKNE 146 (215)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~-qvl~NLi~NA~~a~----~~gg~I~i~~~~~~~~ 146 (215)
......+.+-.+-+.+|+. ...+.++..+++....+...= =++.=|+.||++|. ...|.|+|++..++..
T Consensus 413 ~~~~v~L~kEl~~v~AYl~IEkARF~~rL~v~i~id~~l~~~~iP~filQPLVENAIKHG~~~~~~~g~V~I~V~~~d~~ 492 (557)
T COG3275 413 TQEIVTLSKELEHVNAYLSIEKARFGDRLDVVIDIDEELRQVQIPSFILQPLVENAIKHGISQLKDTGRVTISVEKEDAD 492 (557)
T ss_pred CCEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCCHHHHHHHHHHHHHHCCCCHHCCCCEEEEEEEECCE
T ss_conf 71586559999999999989986448844799946877753368616677888888875364442088179999980883
Q ss_pred EEEEEEECCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCC---EEEEEEECCCCEEEEEEEE
Q ss_conf 0479998789844024588740545457899872049999999997098---7999987799269999941
Q gi|254780891|r 147 NIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKI---RLLPEIIDDHNVVLSALLE 214 (215)
Q Consensus 147 ~~i~V~D~G~Gi~~~e~~~~~~~~~~~~~~~g~GlGl~~~~~i~~~~gG---~i~v~~~~~~g~~f~~~l~ 214 (215)
+++.|+|+|.|+.+| ..+|.|+||+.+++=.+.+=| .+++++.+..|+++++-||
T Consensus 493 l~i~VeDng~li~p~-------------~~~g~giGL~nv~~RLk~lyG~~~gl~i~~~~q~gTri~f~lp 550 (557)
T COG3275 493 LRIEVEDNGGLIQPD-------------EEDGTGIGLANVHKRLKLLYGDDEGLHIESLEQAGTRIIFRLP 550 (557)
T ss_pred EEEEEECCCCCCCCC-------------CCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCEEEEEEC
T ss_conf 899994188776997-------------7889871788999999986482103137861677868999944
No 58
>PRK13559 hypothetical protein; Provisional
Probab=98.82 E-value=8.2e-07 Score=63.15 Aligned_cols=177 Identities=10% Similarity=0.100 Sum_probs=107.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHH-HHHHHHHH
Q ss_conf 99997745454227999999999996144301478988899999999863110011223200000000013-44444322
Q gi|254780891|r 16 ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDI-EQVIEDFI 94 (215)
Q Consensus 16 allas~IaHdlrtPL~~I~~~~elL~~~~~~~~~~~~i~~~~~~~~~l~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~ 94 (215)
.+|..=|.|=.||-|+.|.+.+.+-......++.. .....++..+-..-+..+... ......+.++ ..++..+.
T Consensus 173 ~~LlrEl~HRVKN~LavV~Si~rlq~R~~~~~~~~---~~l~~RI~ALa~aH~~Ll~~~--~~~~v~l~~ll~~~l~~~~ 247 (363)
T PRK13559 173 RRLAREVDHRSKNVFAVVDSIVRLTGRADDASLYA---AAIQERVQALARAHETLLDER--GWETVEVEELIRAQVAPYA 247 (363)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH---HHHHHHHHHHHHHHHHHHCCC--CCCCEEHHHHHHHHHHHCC
T ss_conf 99999988876619999999999653479849999---999999999999999986577--7662329999999998507
Q ss_pred HCCCCCCCCCCCCCCCCCHH----HHHHHHHHHHHHHHHH---HHHCCCCCCCC--CCCCCEEEEEEECCCCCCCHHHHH
Q ss_conf 01223321100000010001----2344456766468765---32001111123--557720479998789844024588
Q gi|254780891|r 95 AVDKRVQVSWTGEKIDLSRE----RAKILLNLFMVAHASL---PRGGKVTISVQ--DSKNENIFSLKINGNLARFPEKFT 165 (215)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~----~~qvl~NLi~NA~~a~---~~gg~I~i~~~--~~~~~~~i~V~D~G~Gi~~~e~~~ 165 (215)
....++.+ +.+...++.+ +.=++.-|+.||+||. .++|+|.|++. .+++.+.|.+.++|.+.. +.
T Consensus 248 ~~~~ri~~--~gp~v~l~~~~A~~L~LilhELaTNA~KyGals~~~G~V~V~w~~~~~~~~l~l~W~E~Ggp~v-~~--- 321 (363)
T PRK13559 248 PRGTRVAF--EGPGIRLGAASVQPLGLVLHELAVNAIKHGALSADAGRISISWRPSREGGGLVLDWQEQGGPTP-PK--- 321 (363)
T ss_pred CCCCEEEE--ECCCEEECHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCEEEEEEECCCCCCC-CC---
T ss_conf 88866999--8897568688877899999999870887356678997799999981789879999977899999-89---
Q ss_pred HHHCCCCCCCCCCCCHHHHHHHHH-HHHCCCEEEEEEECCCCEEEEEEEE
Q ss_conf 740545457899872049999999-9970987999987799269999941
Q gi|254780891|r 166 QIVDGNVESTIDSHDIQFYYVILL-AHENKIRLLPEIIDDHNVVLSALLE 214 (215)
Q Consensus 166 ~~~~~~~~~~~~g~GlGl~~~~~i-~~~~gG~i~v~~~~~~g~~f~~~l~ 214 (215)
....|+|.-+.... ..+.||++..+-. ++|+++++.+|
T Consensus 322 ----------p~~~GFGs~LI~~~v~~qL~G~v~~~~~-~~Gl~~~i~~P 360 (363)
T PRK13559 322 ----------LQKRGFGTVIISAMVESQLKGQIEKDWA-DDGLLARIEIP 360 (363)
T ss_pred ----------CCCCCCHHHHHHHHHHHHCCCEEEEEEC-CCEEEEEEEEE
T ss_conf ----------9999856999999989875987999987-99089999996
No 59
>KOG0787 consensus
Probab=98.59 E-value=3.7e-07 Score=65.38 Aligned_cols=108 Identities=10% Similarity=0.074 Sum_probs=88.7
Q ss_pred CCCC-CCCHHHHHHHHHHHHHHHHHHHH----HCC----CCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHCCCC----
Q ss_conf 0000-10001234445676646876532----001----1111235577204799987898440245887405454----
Q gi|254780891|r 106 GEKI-DLSRERAKILLNLFMVAHASLPR----GGK----VTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV---- 172 (215)
Q Consensus 106 ~~~~-~~~~~~~qvl~NLi~NA~~a~~~----gg~----I~i~~~~~~~~~~i~V~D~G~Gi~~~e~~~~~~~~~~---- 172 (215)
.... ++|..+.-++.-|+.||.+|+-+ .+. |.|.+...++...|.|+|.|-||+ .++.+++|+-.+
T Consensus 251 ~~~~vyvPshL~ymlfElfKNamrATve~h~~~~~~~ppI~V~V~~gdeDl~ikISDrGGGV~-~~~~drlf~Y~ySTa~ 329 (414)
T KOG0787 251 LSFTVYVPSHLYYMLFELFKNAMRATVEHHGDDGDELPPIKVTVAKGDEDLLIKISDRGGGVP-HRDIDRLFSYMYSTAP 329 (414)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCEEEEEECCCCCCC-HHHHHHHHHHHCCCCC
T ss_conf 767604561899999999999999999974448888998599986388635899713789968-0578999866125688
Q ss_pred --------CCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEE
Q ss_conf --------578998720499999999970987999987799269999941
Q gi|254780891|r 173 --------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 (215)
Q Consensus 173 --------~~~~~g~GlGl~~~~~i~~~~gG~i~v~~~~~~g~~f~~~l~ 214 (215)
.....|.|.||.+++..++-.||.+.+-|-+|-||-..+-|.
T Consensus 330 ~~~~d~~~~~plaGfG~GLPisrlYa~yf~Gdl~L~SleG~GTD~yI~Lk 379 (414)
T KOG0787 330 APSSDNNRTAPLAGFGFGLPISRLYARYFGGDLKLQSLEGIGTDVYIYLK 379 (414)
T ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCEEEEEEECCCCCEEEEEC
T ss_conf 98778877676665556873799999994887057852035442689952
No 60
>PRK04069 serine-protein kinase RsbW; Provisional
Probab=98.32 E-value=3.5e-06 Score=59.14 Aligned_cols=88 Identities=11% Similarity=0.065 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHHH---HHCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHCCCCC----CCCCCCCHHHHHHHHHH
Q ss_conf 44567664687653---200111112355772047999878984402458874054545----78998720499999999
Q gi|254780891|r 118 ILLNLFMVAHASLP---RGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE----STIDSHDIQFYYVILLA 190 (215)
Q Consensus 118 vl~NLi~NA~~a~~---~gg~I~i~~~~~~~~~~i~V~D~G~Gi~~~e~~~~~~~~~~~----~~~~g~GlGl~~~~~i~ 190 (215)
++.--+.||++|.- ..+.|.|.+...++.+.|.|+|+|+|+. ++....-..|... ......|+|++|.+.++
T Consensus 46 AV~EA~tNaI~Hay~~~~~~~i~i~~~~~~~~l~i~V~D~G~gfD-~~~~~~~~~P~~~~~~l~~~~~gGlGl~lI~~lm 124 (158)
T PRK04069 46 AVSEACTNAVQHAYKEEEVGEINIRFEIYEDRLEIVVADNGDSFD-YETTKSKIGPYDPSEPIDDLREGGLGLFLIETLM 124 (158)
T ss_pred HHHHHHHHHHHHHCCCCCCCEEEEEEEEECCEEEEEEEECCCCCC-HHHCCCCCCCCCCCCCHHHCCCCCCHHHHHHHHC
T ss_conf 999999999997515699947999999959999999999174879-5674324588888886111367874099999752
Q ss_pred HHCCCEEEEEEECCCCEEEEEE
Q ss_conf 9709879999877992699999
Q gi|254780891|r 191 HENKIRLLPEIIDDHNVVLSAL 212 (215)
Q Consensus 191 ~~~gG~i~v~~~~~~g~~f~~~ 212 (215)
.+ +.+++ ++|++++++
T Consensus 125 De----V~~~~--~~Gt~v~m~ 140 (158)
T PRK04069 125 DD----VTVYK--DSGVTVSMT 140 (158)
T ss_pred CE----EEEEE--CCCEEEEEE
T ss_conf 55----89990--898299999
No 61
>pfam00512 HisKA His Kinase A (phosphoacceptor) domain. dimerization and phosphoacceptor domain of histidine kinases.
Probab=98.21 E-value=2.8e-06 Score=59.77 Aligned_cols=49 Identities=22% Similarity=0.366 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHHHHHHH
Q ss_conf 9997745454227999999999996144301---478988899999999863
Q gi|254780891|r 17 LLCSRICHDIISPIGAIHNSLELLDEVGIED---EVMQLIRLSSMSAIIRLK 65 (215)
Q Consensus 17 llas~IaHdlrtPL~~I~~~~elL~~~~~~~---~~~~~i~~~~~~~~~l~~ 65 (215)
.+.+.+||||||||++|.++++++.+....+ ++.+.+.+.+.++..+++
T Consensus 4 ~f~~~isHelrtPL~~i~~~~~~l~~~~~~~~~~~~l~~i~~~~~rl~~li~ 55 (66)
T pfam00512 4 EFLANLSHELRTPLTAIRGYLELLLDTELSEEQREYLETILRSAERLLRLIN 55 (66)
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999872987184888874889988723279999999976899999999999
No 62
>COG1389 DNA topoisomerase VI, subunit B [DNA replication, recombination, and repair]
Probab=98.18 E-value=1.6e-05 Score=54.89 Aligned_cols=102 Identities=12% Similarity=0.128 Sum_probs=73.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHC---CCCCCCCCC-CCCEEEEEEECCCCCC---CHHHHHHHHCCC-C-C-CCCC-CCC
Q ss_conf 00123444567664687653200---111112355-7720479998789844---024588740545-4-5-7899-872
Q gi|254780891|r 112 SRERAKILLNLFMVAHASLPRGG---KVTISVQDS-KNENIFSLKINGNLAR---FPEKFTQIVDGN-V-E-STID-SHD 180 (215)
Q Consensus 112 ~~~~~qvl~NLi~NA~~a~~~gg---~I~i~~~~~-~~~~~i~V~D~G~Gi~---~~e~~~~~~~~~-~-~-~~~~-g~G 180 (215)
.+.+.+.+.-|+.|+.+|+...| .|.|+++.. .+++.+.|+||||||+ +|..|-++|-+. + . .... -.|
T Consensus 34 ~RsL~~tv~ElV~NSLDA~eeaGILPdI~v~I~~~~~d~y~v~veDNGpGIP~e~IPkvFGk~LygSKfh~~~QsRGqqG 113 (538)
T COG1389 34 IRSLTTTVHELVTNSLDACEEAGILPDIKVEIERIGKDHYKVIVEDNGPGIPEEQIPKVFGKMLYGSKFHRNIQSRGQQG 113 (538)
T ss_pred HHHHHHHHHHHHHCCHHHHHHCCCCCCEEEEEEECCCCEEEEEEECCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCCCCC
T ss_conf 06899999999853165687608887659999854775589999348999985675789988860232323443255324
Q ss_pred HHHHHHHHHHHHCCC-EEEEEEECCC-CEEEEEEE
Q ss_conf 049999999997098-7999987799-26999994
Q gi|254780891|r 181 IQFYYVILLAHENKI-RLLPEIIDDH-NVVLSALL 213 (215)
Q Consensus 181 lGl~~~~~i~~~~gG-~i~v~~~~~~-g~~f~~~l 213 (215)
||..-+-..++.+-| -+.|.+..++ +....+.|
T Consensus 114 iGis~avLysQmTtGkPv~V~s~T~~s~~~~~~~l 148 (538)
T COG1389 114 IGISAAVLYSQMTTGKPVRVISSTGDSGTAYEYEL 148 (538)
T ss_pred CCHHHHHHHHHHCCCCCEEEEECCCCCCCEEEEEE
T ss_conf 24789999987517986699953788862489999
No 63
>TIGR01052 top6b DNA topoisomerase VI, B subunit; InterPro: IPR005734 DNA topoisomerases regulate the number of topological links between two DNA strands (i.e. change the number of superhelical turns) by catalysing transient single- or double-strand breaks, crossing the strands through one another, then resealing the breaks. These enzymes have several functions: to remove DNA supercoils during transcription and DNA replication; for strand breakage during recombination; for chromosome condensation; and to disentangle intertwined DNA during mitosis , . DNA topoisomerases are divided into two classes: type I enzymes (5.99.1.2 from EC; topoisomerases I, III and V) break single-strand DNA, and type II enzymes (5.99.1.3 from EC; topoisomerases II, IV and VI) break double-strand DNA . Type II topoisomerases are ATP-dependent enzymes, and can be subdivided according to their structure and reaction mechanisms: type IIA (topoisomerase II or gyrase, and topoisomerase IV) and type IIB (topoisomerase VI). These enzymes are responsible for relaxing supercoiled DNA as well as for introducing both negative and positive supercoils . This entry represents subunit B of topoisomerase VI, a type IIB topoisomerase found predominantly in archaea, but also in a few eukayotes, such as the plant Arabidopsis thaliana . This enzyme assembles as a heterotetramer, consisting of two A subunits required for DNA cleavage and two B subunits required for ATP hydrolysis. The B subunit is structurally similar to the ATPase domain of type IIA topoisomerases, but the A subunit is distinct, and instead shares homology with the Spo11 protein that mediates double-strand DNA breaks during meiotic recombination in eukaryotes . Therefore, though related to type IIA topoisomerases, topoisomerase VI may have a distinctive mechanism of action. More information about this protein can be found at Protein of the Month: DNA Topoisomerase .; GO: 0003677 DNA binding, 0003918 DNA topoisomerase (ATP-hydrolyzing) activity, 0006265 DNA topological change, 0006268 DNA unwinding during replication, 0005694 chromosome.
Probab=98.15 E-value=4.9e-06 Score=58.24 Aligned_cols=92 Identities=12% Similarity=0.151 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHC---CCCCCCCCCC--------CCEEEEEEECCCCCC---CHHHHHHHHCCCCC---CC
Q ss_conf 0123444567664687653200---1111123557--------720479998789844---02458874054545---78
Q gi|254780891|r 113 RERAKILLNLFMVAHASLPRGG---KVTISVQDSK--------NENIFSLKINGNLAR---FPEKFTQIVDGNVE---ST 175 (215)
Q Consensus 113 ~~~~qvl~NLi~NA~~a~~~gg---~I~i~~~~~~--------~~~~i~V~D~G~Gi~---~~e~~~~~~~~~~~---~~ 175 (215)
+.+.+++--|+.||.||+...| .|.|+++.-+ ++..+.|+||||||+ +|..|-.+|-+.-- ..
T Consensus 27 RsL~~~ihElVtNSLDAcEEAGILP~I~v~I~~~g~seGrGGr~HY~v~VEDNGPGIP~~~IPkVFGKmLaGSK~h~~iQ 106 (662)
T TIGR01052 27 RSLTTVIHELVTNSLDACEEAGILPDIKVEIEKIGKSEGRGGRDHYKVVVEDNGPGIPEEYIPKVFGKMLAGSKFHRIIQ 106 (662)
T ss_pred HHHHHHHHHHHHCHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCCEEEEEEECCCCCCCCCCCCHHHHHCCCCEEEEEEE
T ss_conf 88999999997142467664379984058989852777899996207998407889970001313202111440003320
Q ss_pred CCC-CCHHHHHHHHHHHHCCCE-EEEEEECC
Q ss_conf 998-720499999999970987-99998779
Q gi|254780891|r 176 IDS-HDIQFYYVILLAHENKIR-LLPEIIDD 204 (215)
Q Consensus 176 ~~g-~GlGl~~~~~i~~~~gG~-i~v~~~~~ 204 (215)
..| .|||..=|=.++|.--|. +.|=|..+
T Consensus 107 SRGqQGiG~sgavL~~Q~TTGKP~~VIs~T~ 137 (662)
T TIGR01052 107 SRGQQGIGISGAVLYAQITTGKPVKVISSTG 137 (662)
T ss_pred CCCCHHHHHHHHHHHHHHCCCCCEEEEECCC
T ss_conf 6785156799999987614798458880568
No 64
>cd00082 HisKA Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via trans-autophosphorylation by the catalytic domain of the histidine kinase. They subsequently transfer the phosphoryl group to the Asp acceptor residue of a response regulator protein. Two-component signalling systems, consisting of a histidine protein kinase that senses a signal input and a response regulator that mediates the output, are ancient and evolutionarily conserved signaling mechanisms in prokaryotes and eukaryotes.
Probab=98.12 E-value=4.7e-06 Score=58.32 Aligned_cols=51 Identities=24% Similarity=0.388 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCC----CHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99977454542279999999999961443----0147898889999999986311
Q gi|254780891|r 17 LLCSRICHDIISPIGAIHNSLELLDEVGI----EDEVMQLIRLSSMSAIIRLKFM 67 (215)
Q Consensus 17 llas~IaHdlrtPL~~I~~~~elL~~~~~----~~~~~~~i~~~~~~~~~l~~~~ 67 (215)
.+.+.|||||||||++|.++++++.+... ..+..+.+.+...++..+++-+
T Consensus 6 ~~~a~iaHelrtPL~~i~~~~~~l~~~~~~~~~~~~~~~~i~~~~~~l~~lv~~~ 60 (65)
T cd00082 6 EFLANVSHELRTPLTAIRGALELLEEELLDDEEQREYLERIREEAERLLRLINDL 60 (65)
T ss_pred HHHHHHHHHHCCHHHHHHCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999872987048888860148988566886999999999999999999999999
No 65
>PRK04184 DNA topoisomerase VI subunit B; Validated
Probab=98.06 E-value=3.7e-05 Score=52.62 Aligned_cols=96 Identities=11% Similarity=0.085 Sum_probs=66.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHC---CCCCCCCCC-CCCEEEEEEECCCCCC---CHHHHHHHHCC--CC-CCCCCC-CC
Q ss_conf 00123444567664687653200---111112355-7720479998789844---02458874054--54-578998-72
Q gi|254780891|r 112 SRERAKILLNLFMVAHASLPRGG---KVTISVQDS-KNENIFSLKINGNLAR---FPEKFTQIVDG--NV-ESTIDS-HD 180 (215)
Q Consensus 112 ~~~~~qvl~NLi~NA~~a~~~gg---~I~i~~~~~-~~~~~i~V~D~G~Gi~---~~e~~~~~~~~--~~-~~~~~g-~G 180 (215)
.+.+.+.+.-++.||.+|+...| .|.|.+... ++...+.|+||||||+ +|..|-+++-+ |. -+...| .|
T Consensus 33 ~ral~ttvkE~VdNsLDAcEe~gILPdI~v~I~~~~~~~y~v~VeDNGpGI~~~~ip~vFGk~L~GSKf~~~rQsRGqqG 112 (533)
T PRK04184 33 ARALYTTVKELVDNSLDACEEAGILPDIKVEIRRVGEDYYRVIVEDNGPGIPPEQIPKVFGKLLYGSKFHRLRQSRGQQG 112 (533)
T ss_pred CHHHHHHHHHHHHCCHHHHHHHCCCCCEEEEEEECCCCEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCCC
T ss_conf 31799999999733176688608898659999983785699999448899886788899988850253240211477535
Q ss_pred HHHHHHHHHHHHC-CCEEEEEEECCCCE
Q ss_conf 0499999999970-98799998779926
Q gi|254780891|r 181 IQFYYVILLAHEN-KIRLLPEIIDDHNV 207 (215)
Q Consensus 181 lGl~~~~~i~~~~-gG~i~v~~~~~~g~ 207 (215)
||...+-..++.. |--+.|-|..+++.
T Consensus 113 iGis~avlysQlTTGkP~~V~S~~~~~~ 140 (533)
T PRK04184 113 IGISAAVLYAQMTTGKPVRVISSTGGSK 140 (533)
T ss_pred CCHHHHHHHHHHCCCCCEEEEECCCCCC
T ss_conf 2478887776312688659996479985
No 66
>smart00388 HisKA His Kinase A (phosphoacceptor) domain. Dimerisation and phosphoacceptor domain of histidine kinases.
Probab=98.02 E-value=1.3e-05 Score=55.61 Aligned_cols=49 Identities=22% Similarity=0.411 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHHHHHHH
Q ss_conf 9997745454227999999999996144301---478988899999999863
Q gi|254780891|r 17 LLCSRICHDIISPIGAIHNSLELLDEVGIED---EVMQLIRLSSMSAIIRLK 65 (215)
Q Consensus 17 llas~IaHdlrtPL~~I~~~~elL~~~~~~~---~~~~~i~~~~~~~~~l~~ 65 (215)
.+.+.+||||||||++|.++++++.+....+ ++.+.+.+...++..+++
T Consensus 4 ~~~~~isHelrtPL~~i~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~li~ 55 (66)
T smart00388 4 EFLANLSHELRTPLTAIRGYLELLEDTELSEEQREYLETILRSAERLLRLIN 55 (66)
T ss_pred HHHHHHHHHHHCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999976987081888999988653027999999999988999999999999
No 67
>COG2172 RsbW Anti-sigma regulatory factor (Ser/Thr protein kinase) [Signal transduction mechanisms]
Probab=97.98 E-value=4.9e-05 Score=51.88 Aligned_cols=90 Identities=11% Similarity=0.075 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHH----HHHCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHCCCCC--CCCCCCCHHHHHHHHHH
Q ss_conf 44456766468765----3200111112355772047999878984402458874054545--78998720499999999
Q gi|254780891|r 117 KILLNLFMVAHASL----PRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE--STIDSHDIQFYYVILLA 190 (215)
Q Consensus 117 qvl~NLi~NA~~a~----~~gg~I~i~~~~~~~~~~i~V~D~G~Gi~~~e~~~~~~~~~~~--~~~~g~GlGl~~~~~i~ 190 (215)
-++.-++.||++|. |..|.|.|.+...++.+.+.|+|+|+|+. ..++.+.+.+. .+....|+||+++++++
T Consensus 43 ~av~E~~~N~v~Ha~~~~~~~g~I~i~~~~~~~~~~i~i~D~G~~~~---~~~~~~~~~~~~~~~~~~~G~Gl~l~~~~~ 119 (146)
T COG2172 43 IAVSEALTNAVKHAYKLDPSEGEIRIEVSLDDGKLEIRIWDQGPGIE---DLEESLGPGDTTAEGLQEGGLGLFLAKRLM 119 (146)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCEEEEEEEECCCCCC---CHHHHCCCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf 99999998999976303899865999999709939999995798987---888853888888875324731378886211
Q ss_pred HHCCCEEEEEEECCCC-EEEEEEE
Q ss_conf 9709879999877992-6999994
Q gi|254780891|r 191 HENKIRLLPEIIDDHN-VVLSALL 213 (215)
Q Consensus 191 ~~~gG~i~v~~~~~~g-~~f~~~l 213 (215)
.++.++..++++ ..++++.
T Consensus 120 ----D~~~~~~~~~~~~~~~~~~~ 139 (146)
T COG2172 120 ----DEFSYERSEDGRNRLTKITL 139 (146)
T ss_pred ----EEEEEEEECCCCEEEEEEEE
T ss_conf ----07999960698558999996
No 68
>KOG0519 consensus
Probab=97.64 E-value=3.5e-06 Score=59.15 Aligned_cols=193 Identities=14% Similarity=0.091 Sum_probs=107.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-------HHHHHHHHHCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 997745454227999999999996144301478988899999-------9998631100112232000000000134444
Q gi|254780891|r 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS-------AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI 90 (215)
Q Consensus 18 las~IaHdlrtPL~~I~~~~elL~~~~~~~~~~~~i~~~~~~-------~~~l~~~~r~~~~~~~~~~~~~~~~~~~~~~ 90 (215)
+-+.++||||+|+.. +...++.++..+.+...+....... ++++.+......+........+....+...+
T Consensus 224 ~~~~~sHeir~p~~~--~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~s~ln~i~d~~~v~~g~~~l~~~rf~l~~ll~~~ 301 (786)
T KOG0519 224 FLATLSHEIRTPLNG--GMLGGLSDTDLDSDQRLILNTDRVSAKSLLSLLNDILDLSKVESGKGELVAKRFDLRTLLNFV 301 (786)
T ss_pred CCCCCCCEEECCCCC--CCCCEEECCCCCHHHHHHHCCCHHHHHCHHHHHHHHHHHCCCCCCCCCCEECCCCHHHHHHHH
T ss_conf 134456324434445--664122034421568987430012200001377776401135323554032234526666777
Q ss_pred HH----HHHCCCCCC----CCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCC----------------C--
Q ss_conf 43----220122332----1100000--010001234445676646876532001111123----------------5--
Q gi|254780891|r 91 ED----FIAVDKRVQ----VSWTGEK--IDLSRERAKILLNLFMVAHASLPRGGKVTISVQ----------------D-- 142 (215)
Q Consensus 91 ~~----~~~~~~~~~----~~~~~~~--~~~~~~~~qvl~NLi~NA~~a~~~gg~I~i~~~----------------~-- 142 (215)
.. .... +... .+...+. ......+.|++.|++.||++++..+.. ..++. .
T Consensus 302 ~~~~~~~~~~-~~~~~~~~~~~~~p~~v~~de~~~~qv~~n~v~naik~t~~~~i-~~~~~~~~~~~~~~~~l~~~~~e~ 379 (786)
T KOG0519 302 ISLLSELSQA-KYAILVLDLSSGVPRNVRGDEARLRQVIANLVSNAIKFTHAGHL-EESVIAREELSESNDVLLRAKEEA 379 (786)
T ss_pred HHHHHHHHHC-CCCEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCE-EEEEEECHHHHHHHHHHHHHHHHH
T ss_conf 8776665513-67346520787776420356101100033320144354446622-466651211004678997545776
Q ss_pred ----------------------C--------CCCEEEEEEECCCCCCCH----HHHHHHH--CCCCCCCCCCCCHHHHHH
Q ss_conf ----------------------5--------772047999878984402----4588740--545457899872049999
Q gi|254780891|r 143 ----------------------S--------KNENIFSLKINGNLARFP----EKFTQIV--DGNVESTIDSHDIQFYYV 186 (215)
Q Consensus 143 ----------------------~--------~~~~~i~V~D~G~Gi~~~----e~~~~~~--~~~~~~~~~g~GlGl~~~ 186 (215)
. --.-...+.|+|.+|..- ..+..+- .+..+...+|+|+|+.++
T Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~q~~~~~~~~~~gt~~~~~i~ 459 (786)
T KOG0519 380 HMAGKARIDFLQKMSHAMRAPRHNIISLLSLLLQDIVLSPDSGLEIQTVMRSSNVFTSLIQADPDITRLYGGTGLGESIV 459 (786)
T ss_pred HHCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHEEECCCCCEEEEECCCCHHHHHHHHCCCHHCCCCCCCCCCCCCCC
T ss_conf 53515566788874133124220421223576652022366640685023304655545146610034568764533222
Q ss_pred HHHHHHCCCEEEEEEECCCCEEEEEEEE
Q ss_conf 9999970987999987799269999941
Q gi|254780891|r 187 ILLAHENKIRLLPEIIDDHNVVLSALLE 214 (215)
Q Consensus 187 ~~i~~~~gG~i~v~~~~~~g~~f~~~l~ 214 (215)
+.+.+-.+|.+...+....|++|++.++
T Consensus 460 ~~l~~l~~~~~~~~~~~~~~~t~~~~~~ 487 (786)
T KOG0519 460 FSLVELMSGEISDISCISLGKTFSFTLD 487 (786)
T ss_pred CCHHHHHHHHHHHHHHCCCCCEEEEEEC
T ss_conf 3288998867432110034752223312
No 69
>TIGR01925 spIIAB anti-sigma F factor; InterPro: IPR010194 This entry describes the SpoIIAB anti-sigma F factor. Sigma F regulates spore development in B subtilis. SpoIIAB binds to sigma F, preventing formation of the transcription complex at the promoter . SpoIIAA (anti-anti-sigma F factor) binds to SpoIIAB to inhibit association with sigma F, however SpoIIAB can phosphorylate SpoIIAA, causing disassociation of the SpoIIAA/B complex . The SpoIIE phosphatase dephosphorylates SpoIIAA.; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0016989 sigma factor antagonist activity, 0006468 protein amino acid phosphorylation, 0030435 sporulation, 0045892 negative regulation of transcription DNA-dependent.
Probab=97.30 E-value=0.00033 Score=46.59 Aligned_cols=90 Identities=10% Similarity=0.008 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHHHHH---HHCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHCCCCCCCC--CCCCHHHHHHHHHH
Q ss_conf 3444567664687653---200111112355772047999878984402458874054545789--98720499999999
Q gi|254780891|r 116 AKILLNLFMVAHASLP---RGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLA 190 (215)
Q Consensus 116 ~qvl~NLi~NA~~a~~---~gg~I~i~~~~~~~~~~i~V~D~G~Gi~~~e~~~~~~~~~~~~~~--~g~GlGl~~~~~i~ 190 (215)
.-++.--+.||+=|.- .+|.|.|.+.-.+..+.+.|.|.|-||. .++..-.|-|++++ .-+|+|+ .+.
T Consensus 41 K~~VSEAVTNAIIHGYE~~~~~~V~I~~~~~d~~~~~~v~D~G~GI~---~lE~A~~PLyTskPeLERSGMGF----TvM 113 (137)
T TIGR01925 41 KTAVSEAVTNAIIHGYEENKEGVVIISATIEDDEVSITVRDEGIGIE---NLEEAREPLYTSKPELERSGMGF----TVM 113 (137)
T ss_pred HHHHHHHHHCCEEECEEECCCCEEEEEEEEECCEEEEEEEECCCCHH---HHHHHCCCCCCCCCCCCCCCCCE----EEE
T ss_conf 43332232120531456379977899999605489999864675723---37853266457998722067860----121
Q ss_pred HHCCCEEEEEEECCCCEEEEEE
Q ss_conf 9709879999877992699999
Q gi|254780891|r 191 HENKIRLLPEIIDDHNVVLSAL 212 (215)
Q Consensus 191 ~~~gG~i~v~~~~~~g~~f~~~ 212 (215)
+..=-.|.|+|.++.||...+.
T Consensus 114 E~FMD~~~v~S~~~~GT~I~~~ 135 (137)
T TIGR01925 114 ESFMDDVEVDSEKEKGTKIILK 135 (137)
T ss_pred CCCCCCEEEEECCCCCCEEEEE
T ss_conf 1124512686238998468875
No 70
>TIGR00585 mutl DNA mismatch repair protein MutL; InterPro: IPR014763 This entry represents DNA mismatch repair proteins, such as MutL. The dimeric MutL protein has a key function in communicating mismatch recognition by MutS to downstream repair processes. Mismatch repair contributes to the overall fidelity of DNA replication by targeting mispaired bases that arise through replication errors during homologous recombination and as a result of DNA damage. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex ..
Probab=97.29 E-value=0.00035 Score=46.48 Aligned_cols=61 Identities=15% Similarity=0.209 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHCCCCCCCCCC
Q ss_conf 12344456766468765320011111235577204799987898440245887405454578998
Q gi|254780891|r 114 ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDS 178 (215)
Q Consensus 114 ~~~qvl~NLi~NA~~a~~~gg~I~i~~~~~~~~~~i~V~D~G~Gi~~~e~~~~~~~~~~~~~~~g 178 (215)
+...|+-=|+.||+||.. ..|.|.+.. ++.-.|.|+|||.||. ++++.-...+++|.|..-
T Consensus 22 ~p~~vVKELvENSLDAGA--t~I~v~~~~-gG~~~I~V~DNG~Gi~-~~d~~~~~~~haTSKI~~ 82 (367)
T TIGR00585 22 RPASVVKELVENSLDAGA--TKIEVEIEE-GGLKLIEVSDNGSGID-KEDLELACERHATSKIQS 82 (367)
T ss_pred HHHHHHHHHHHHHHCCCC--CEEEEEEEE-CCEEEEEEEECCCCCC-HHHHHHHHCCCCCCCCCC
T ss_conf 279999998873121488--589999962-6535899997785677-777998612357763224
No 71
>COG0326 HtpG Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]
Probab=97.12 E-value=0.00089 Score=43.89 Aligned_cols=97 Identities=14% Similarity=0.196 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHHH--------------HCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHH----------HCCCCC
Q ss_conf 445676646876532--------------00111112355772047999878984402458874----------054545
Q gi|254780891|r 118 ILLNLFMVAHASLPR--------------GGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI----------VDGNVE 173 (215)
Q Consensus 118 vl~NLi~NA~~a~~~--------------gg~I~i~~~~~~~~~~i~V~D~G~Gi~~~e~~~~~----------~~~~~~ 173 (215)
-+.-||.||.+|+.. .+.+.|++..+.+.-.++|+|+|.||.-+|....+ |.....
T Consensus 31 FLRELISNAsDAidKlr~~al~~~~~~~~~~~~~I~i~~Dk~~kTLtI~DNGIGMT~~Ev~~~LgTIAkSgT~~F~~~l~ 110 (623)
T COG0326 31 FLRELISNASDAIDKLRFEALSDPELGEGDSDLRIRISFDKDNKTLTISDNGIGMTKDEVIENLGTIAKSGTKEFLESLS 110 (623)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCHHHHHHHHH
T ss_conf 99999850689999988775268211478888448997636678799972787888999999877751002799998730
Q ss_pred -CC-----CCCCCHHHHHHHHHHHH-------CC------------CEEEEEE--ECC-CCEEEEEEEE
Q ss_conf -78-----99872049999999997-------09------------8799998--779-9269999941
Q gi|254780891|r 174 -ST-----IDSHDIQFYYVILLAHE-------NK------------IRLLPEI--IDD-HNVVLSALLE 214 (215)
Q Consensus 174 -~~-----~~g~GlGl~~~~~i~~~-------~g------------G~i~v~~--~~~-~g~~f~~~l~ 214 (215)
.+ .+-.|+|+|=|.-+|.. .| |..+++. .+. .||.+++.|.
T Consensus 111 ~~~~~~~lIGQFGVGFYSaFmVAdkV~V~T~~~~~~~~~~W~S~g~g~ytv~~~~~~~~~GT~I~L~Lk 179 (623)
T COG0326 111 EDQKDSDLIGQFGVGFYSAFMVADKVTVITRSAGEDEAYHWESDGEGEYTVEDIDKEPRRGTEITLHLK 179 (623)
T ss_pred CCCCCCCCCCCCCCHHHHEEEEEEEEEEEECCCCCCCCCEEEECCCCCEEEEECCCCCCCCCEEEEEEC
T ss_conf 354454400245500342025511689996468998660687769874677656677878857999988
No 72
>PRK00095 mutL DNA mismatch repair protein; Reviewed
Probab=97.07 E-value=0.00087 Score=43.93 Aligned_cols=60 Identities=15% Similarity=0.200 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHCCCCCCCC
Q ss_conf 0123444567664687653200111112355772047999878984402458874054545789
Q gi|254780891|r 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI 176 (215)
Q Consensus 113 ~~~~qvl~NLi~NA~~a~~~gg~I~i~~~~~~~~~~i~V~D~G~Gi~~~e~~~~~~~~~~~~~~ 176 (215)
.+...|+--|+.||++|.. ..|.|.+.. ++.-.|.|+|+|.||+ ++++...|.+..+.|.
T Consensus 21 erpasvVKELvENsiDAgA--t~I~V~i~~-~G~~~I~V~DnG~Gi~-~~d~~l~~~rhaTSKi 80 (612)
T PRK00095 21 ERPASVVKELVENALDAGA--TRIDIEIEE-GGLKLIRVRDNGCGIP-KEDLPLALSRHATSKI 80 (612)
T ss_pred CCHHHHHHHHHHHHHCCCC--CEEEEEEEC-CCCCEEEEEECCCCCC-HHHHHHHHHCCCCCCC
T ss_conf 5889999999841331799--879999974-9831799997999989-8999999757277678
No 73
>PTZ00272 heat shock protein 83 kDa (Hsp83); Provisional
Probab=97.03 E-value=0.0018 Score=41.91 Aligned_cols=96 Identities=15% Similarity=0.187 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHH--------------HCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHH--------------HCC
Q ss_conf 45676646876532--------------00111112355772047999878984402458874--------------054
Q gi|254780891|r 119 LLNLFMVAHASLPR--------------GGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI--------------VDG 170 (215)
Q Consensus 119 l~NLi~NA~~a~~~--------------gg~I~i~~~~~~~~~~i~V~D~G~Gi~~~e~~~~~--------------~~~ 170 (215)
++-||.||.+|+.. +..+.|.+..+.+.-.|+|+|+|.||+-++....+ +..
T Consensus 30 LRELISNASDAldKlr~~~lt~~~~~~~~~~l~I~I~~D~~~~tltI~D~GIGMt~~el~~nLGTIA~SGt~~Fl~~l~~ 109 (701)
T PTZ00272 30 LRELISNASDACDKIRYQSLTDPSVLGESPRLCIRVVPDKENKTLTVEDNGIGMTKADLVNNLGTIARSGTKAFMEALEA 109 (701)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCEEEEEECCCCCEEEEEECCCCCCHHHHHHHCCCCCCHHHHHHHHHHHC
T ss_conf 78777627999999999973693440788773599997587897999943888899999975210111418999999864
Q ss_pred CCCCC-CCCCCHHHHHHHHHHHHC------------------CCEEEEEEEC----CCCEEEEEEEE
Q ss_conf 54578-998720499999999970------------------9879999877----99269999941
Q gi|254780891|r 171 NVEST-IDSHDIQFYYVILLAHEN------------------KIRLLPEIID----DHNVVLSALLE 214 (215)
Q Consensus 171 ~~~~~-~~g~GlGl~~~~~i~~~~------------------gG~i~v~~~~----~~g~~f~~~l~ 214 (215)
..... .+-.|+|+|-+..++..- +|..+++..+ +.||.+++.|.
T Consensus 110 ~~d~~lIGQFGVGFYSaFmVAdkV~V~sk~~~~~~~~W~S~g~g~y~i~~~~~~~~~rGT~I~L~Lk 176 (701)
T PTZ00272 110 GGDMSMIGQFGVGFYSAYLVADRVTVTSKNNSDESYVWESSAGGTFTITSTPESDMKRGTRITLHLK 176 (701)
T ss_pred CCCCCCCCCCCCCHHHEEEECCEEEEEECCCCCCCEEEEEECCCCEEEEECCCCCCCCCCEEEEEEC
T ss_conf 7973523467665432012056799996469987558998058965888577777789857999988
No 74
>PTZ00130 heat shock protein 90; Provisional
Probab=96.83 E-value=0.006 Score=38.62 Aligned_cols=96 Identities=20% Similarity=0.267 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHH--------------HCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHH-----------HC----
Q ss_conf 45676646876532--------------00111112355772047999878984402458874-----------05----
Q gi|254780891|r 119 LLNLFMVAHASLPR--------------GGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI-----------VD---- 169 (215)
Q Consensus 119 l~NLi~NA~~a~~~--------------gg~I~i~~~~~~~~~~i~V~D~G~Gi~~~e~~~~~-----------~~---- 169 (215)
|+-||.||-+|... ...+.|.+..+.+.-.|+|+|+|.||+-++....+ ..
T Consensus 101 LRELISNASDALDKlRf~sLtd~~~~~~~~~l~I~I~~Dke~ktLtI~DtGIGMTk~eLi~NLGTIAkSGTk~Fle~l~~ 180 (824)
T PTZ00130 101 LRELISNAADALEKIRFLSLSDEKVLGEEKKLEIRISANKEKNILSITDTGIGMTKEDLINNLGTIAKSGTSNFLEAISK 180 (824)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCEEEEEECCCCCEEEEEECCCCCCHHHHHHHCCCCEEHHHHHHHHHHHH
T ss_conf 88887648999999999971792430888885699897588998999844888889999985691333528999999873
Q ss_pred CCCCCC-CCCCCHHHHHHHHHHHH------C------------CCEEEEEEEC-----CCCEEEEEEEE
Q ss_conf 454578-99872049999999997------0------------9879999877-----99269999941
Q gi|254780891|r 170 GNVEST-IDSHDIQFYYVILLAHE------N------------KIRLLPEIID-----DHNVVLSALLE 214 (215)
Q Consensus 170 ~~~~~~-~~g~GlGl~~~~~i~~~------~------------gG~i~v~~~~-----~~g~~f~~~l~ 214 (215)
...... .+-.|+|+|-+..++.. | +|+.++...+ +.||.+++.|.
T Consensus 181 ~~~d~~LIGQFGVGFYSaFmVAdkV~V~SK~~~de~~~WeS~g~gsftI~~~~~~~~l~RGT~I~LhLK 249 (824)
T PTZ00130 181 SGGDMSLIGQFGVGFYSAFLVADKVIVYTKNNDDEQYIWESTADAKFSIYKDPRGATLKRGTRISLHLK 249 (824)
T ss_pred CCCCCCCCCCCCCCHHHHHHCCCEEEEEECCCCCCCEEEEEECCCCEEEEECCCCCCCCCCEEEEEEEC
T ss_conf 589701026777525444310676899957899964089980678558886777777789706999856
No 75
>PRK05218 heat shock protein 90; Provisional
Probab=96.71 E-value=0.00069 Score=44.58 Aligned_cols=72 Identities=21% Similarity=0.317 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHH--------------HHCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHC-----C---------
Q ss_conf 4567664687653--------------20011111235577204799987898440245887405-----4---------
Q gi|254780891|r 119 LLNLFMVAHASLP--------------RGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD-----G--------- 170 (215)
Q Consensus 119 l~NLi~NA~~a~~--------------~gg~I~i~~~~~~~~~~i~V~D~G~Gi~~~e~~~~~~~-----~--------- 170 (215)
++-||.||.+|+. .+....|.+..+.+.-.|.|+|+|.||+-+| +...+. |
T Consensus 30 lRELisNAsDAl~K~r~~~l~~~~~~~~~~~~~I~I~~d~~~~tl~I~D~GIGMt~~E-l~~~LgTIa~Sgt~~F~~~~~ 108 (612)
T PRK05218 30 LRELISNASDAIDKLRFEALSDEALYEGDGELRIRISFDKEARTLTISDNGIGMTREE-VIENLGTIAKSGTKEFLEKLK 108 (612)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCEEEEEECCCCCEEEEEECCCCCCHHH-HHHHHHHHCCHHHHHHHHHHH
T ss_conf 8888741999999999987259032178888569999759899899995388889999-998611102011899999865
Q ss_pred -CCC--CC-CCCCCHHHHHHHHHHH
Q ss_conf -545--78-9987204999999999
Q gi|254780891|r 171 -NVE--ST-IDSHDIQFYYVILLAH 191 (215)
Q Consensus 171 -~~~--~~-~~g~GlGl~~~~~i~~ 191 (215)
... .. .+-.|+|+|=|..+++
T Consensus 109 ~~~~~~~~lIGqFGvGFyS~FmVad 133 (612)
T PRK05218 109 GDQKKDSQLIGQFGVGFYSAFMVAD 133 (612)
T ss_pred HCCCCCCCHHHHCCCCCEEEEEECC
T ss_conf 2135540023213524204656504
No 76
>TIGR01924 rsbW_low_gc anti-sigma B factor; InterPro: IPR010193 This entry describes the anti-sigma B factor also known as serine-protein kinase RsbW. Sigma B controls the general stress regulon in B subtilis and is activated by cell stresses such as stationary phase and heat shock. RsbW binds to sigma B and prevents formation of the transcription complex at the promoter . RsbV (anti-anti-sigma factor) binds to RsbW to inhibit association with sigma B, however RsbW can phosphorylate RsbV, causing disassociation of the RsbV/RsbW complex . Low ATP level or environmental stress causes the dephosphorylation of RsbV .; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0016989 sigma factor antagonist activity, 0006468 protein amino acid phosphorylation, 0045892 negative regulation of transcription DNA-dependent.
Probab=96.53 E-value=0.0031 Score=40.46 Aligned_cols=91 Identities=10% Similarity=0.092 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHHHHHH---HH-CCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHCCCCCCC----CCCCCHHHHHH
Q ss_conf 23444567664687653---20-011111235577204799987898440245887405454578----99872049999
Q gi|254780891|r 115 RAKILLNLFMVAHASLP---RG-GKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST----IDSHDIQFYYV 186 (215)
Q Consensus 115 ~~qvl~NLi~NA~~a~~---~g-g~I~i~~~~~~~~~~i~V~D~G~Gi~~~e~~~~~~~~~~~~~----~~g~GlGl~~~ 186 (215)
+.-++.--|.||++|.= .. |.|.|...--++++.|.|+|+|.-+-. +.+.+-..|+...+ ..==||||||.
T Consensus 44 ~KIAVSEA~TN~V~HAYke~~nvG~~~i~F~iyEDklev~vsD~G~SFD~-d~~k~~lGPyd~~~~i~~L~eGGLGLFLi 122 (161)
T TIGR01924 44 LKIAVSEACTNAVKHAYKEEENVGEISIEFEIYEDKLEVIVSDEGDSFDL-DTKKQELGPYDKSEDIDQLREGGLGLFLI 122 (161)
T ss_pred HHHHHHHHHCCCEEEEECCCCCEEEEEEEEEEEEEEEEEEEECCCCCCCH-HHHHHHCCCCCCCCCHHHHHCCCCHHHHH
T ss_conf 67766555303311223089836789988878875789998207864111-00253258979578754320177136645
Q ss_pred HHHHHHCCCEEEEEEECCCCEEEEEE
Q ss_conf 99999709879999877992699999
Q gi|254780891|r 187 ILLAHENKIRLLPEIIDDHNVVLSAL 212 (215)
Q Consensus 187 ~~i~~~~gG~i~v~~~~~~g~~f~~~ 212 (215)
-.+-. .|+-..+.|.++.+|
T Consensus 123 etLMD------~V~~~~~sGV~v~MT 142 (161)
T TIGR01924 123 ETLMD------EVKVYEDSGVTVAMT 142 (161)
T ss_pred HCCCC------EEEEEECCCEEEEEE
T ss_conf 10376------169983286089886
No 77
>COG0323 MutL DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair]
Probab=96.52 E-value=0.0032 Score=40.37 Aligned_cols=59 Identities=15% Similarity=0.170 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHCCCCCCCCC
Q ss_conf 234445676646876532001111123557720479998789844024588740545457899
Q gi|254780891|r 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTID 177 (215)
Q Consensus 115 ~~qvl~NLi~NA~~a~~~gg~I~i~~~~~~~~~~i~V~D~G~Gi~~~e~~~~~~~~~~~~~~~ 177 (215)
-.-|+--|+.||++|.. .+|.|.++. ++.-.|.|+|+|.||. ++++.-.+....+.|..
T Consensus 24 PaSVVKELVENSlDAGA--t~I~I~ve~-gG~~~I~V~DNG~Gi~-~~Dl~la~~rHaTSKI~ 82 (638)
T COG0323 24 PASVVKELVENSLDAGA--TRIDIEVEG-GGLKLIRVRDNGSGID-KEDLPLALLRHATSKIA 82 (638)
T ss_pred HHHHHHHHHHCCCCCCC--CEEEEEEEC-CCEEEEEEEECCCCCC-HHHHHHHHHCCCCCCCC
T ss_conf 88999999861030499--889999935-9801899988999999-89999998651464578
No 78
>TIGR01058 parE_Gpos DNA topoisomerase IV, B subunit; InterPro: IPR005740 DNA topoisomerases regulate the number of topological links between two DNA strands (i.e. change the number of superhelical turns) by catalysing transient single- or double-strand breaks, crossing the strands through one another, then resealing the breaks. These enzymes have several functions: to remove DNA supercoils during transcription and DNA replication; for strand breakage during recombination; for chromosome condensation; and to disentangle intertwined DNA during mitosis , . DNA topoisomerases are divided into two classes: type I enzymes (5.99.1.2 from EC; topoisomerases I, III and V) break single-strand DNA, and type II enzymes (5.99.1.3 from EC; topoisomerases II, IV and VI) break double-strand DNA . Type II topoisomerases are ATP-dependent enzymes, and can be subdivided according to their structure and reaction mechanisms: type IIA (topoisomerase II or gyrase, and topoisomerase IV) and type IIB (topoisomerase VI). These enzymes are responsible for relaxing supercoiled DNA as well as for introducing both negative and positive supercoils . This entry represents subunit B (parE) of topoisomerase IV from Gram positive bacteria. Topoisomerase IV primarily decatenates DNA and relaxes positive supercoils, which is important in bacteria, where the circular chromosome becomes catenated, or linked, during replication . Topoisomerase IV consists of two polypeptide subunits, parC (subunit A), which is homologous to gyrA of topoisomerase II, and parE (subunit B), which is homologous to gyrB of topoisomerase II. More information about this protein can be found at Protein of the Month: DNA Topoisomerase .; GO: 0003677 DNA binding, 0003918 DNA topoisomerase (ATP-hydrolyzing) activity, 0005524 ATP binding, 0006265 DNA topological change, 0005694 chromosome.
Probab=94.58 E-value=0.12 Score=30.39 Aligned_cols=86 Identities=10% Similarity=0.153 Sum_probs=54.9
Q ss_pred CHHHHHHHHHHHHHHHHHHH--HHCCCCCCCCCCCCCEEEEEEECCCCCCCH--H-----HHHHHH----------CCCC
Q ss_conf 00123444567664687653--200111112355772047999878984402--4-----588740----------5454
Q gi|254780891|r 112 SRERAKILLNLFMVAHASLP--RGGKVTISVQDSKNENIFSLKINGNLARFP--E-----KFTQIV----------DGNV 172 (215)
Q Consensus 112 ~~~~~qvl~NLi~NA~~a~~--~gg~I~i~~~~~~~~~~i~V~D~G~Gi~~~--e-----~~~~~~----------~~~~ 172 (215)
..-+.=++.-++.||++=.= .+..|.|.+..++. |+|.|+|.|||.+ . -++-+| ++.+
T Consensus 38 s~GLHHl~wEIvdNsvDEvl~g~a~~I~V~l~~dns---i~V~D~GRG~P~~~h~~~~isT~e~vlT~LHAGGKFd~~~Y 114 (655)
T TIGR01058 38 SKGLHHLVWEIVDNSVDEVLAGYADNITVTLHKDNS---ISVQDDGRGIPTGIHKQGKISTVETVLTVLHAGGKFDQGGY 114 (655)
T ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCE---EEEEECCCCCCCCHHCCCCCCCCCEEEEEEECCCCCCCCCE
T ss_conf 785055678788446888982269747999827870---78875785376012216898851004544307730378650
Q ss_pred CCCCCCCCHHHHHHHHHHHHCCCEEEEEEECC
Q ss_conf 57899872049999999997098799998779
Q gi|254780891|r 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDD 204 (215)
Q Consensus 173 ~~~~~g~GlGl~~~~~i~~~~gG~i~v~~~~~ 204 (215)
.+..+-||+|- .+|....--|.|+-..+
T Consensus 115 KtaGGLHGVGa----SVVNALS~wL~v~v~Rd 142 (655)
T TIGR01058 115 KTAGGLHGVGA----SVVNALSSWLEVEVKRD 142 (655)
T ss_pred EECCCCCCCHH----HHHHHCCCCEEEEEEEC
T ss_conf 10573223036----77640226338999878
No 79
>PRK05644 gyrB DNA gyrase subunit B; Validated
Probab=92.29 E-value=0.22 Score=28.65 Aligned_cols=91 Identities=12% Similarity=0.079 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHHHHH--HCCCCCCCCCCCCCEEEEEEECCCCCCCH----------HH-HHHHHCC-CCC-----C
Q ss_conf 1234445676646876532--00111112355772047999878984402----------45-8874054-545-----7
Q gi|254780891|r 114 ERAKILLNLFMVAHASLPR--GGKVTISVQDSKNENIFSLKINGNLARFP----------EK-FTQIVDG-NVE-----S 174 (215)
Q Consensus 114 ~~~qvl~NLi~NA~~a~~~--gg~I~i~~~~~~~~~~i~V~D~G~Gi~~~----------e~-~~~~~~~-~~~-----~ 174 (215)
-+..++.-++.||++=.-. +..|.|++..++ .|+|+|+|.||+.+ |. |..+..+ -|. .
T Consensus 40 glhhlv~EvvDNsiDEa~aG~~~~I~V~i~~Dg---sitV~DnGRGIPvd~h~~~~~~~~E~I~t~LhAGgKFd~~~Ykv 116 (725)
T PRK05644 40 GLHHLVYEVVDNSIDEALAGYCDEIEVTIHADG---SVSVTDNGRGIPVDIHPKEGVSAAEVVMTVLHAGGKFDGNSYKV 116 (725)
T ss_pred CCEEEEEEEEHHHHHHHHCCCCCEEEEEECCCC---EEEEEECCCCCCCCCCCCCCCCHHHHEECCCCCCCCCCCCCCEE
T ss_conf 766889864214787986389967999996898---29999899767763457779722613000035566899996353
Q ss_pred CCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEE
Q ss_conf 89987204999999999709879999877992699999
Q gi|254780891|r 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 (215)
Q Consensus 175 ~~~g~GlGl~~~~~i~~~~gG~i~v~~~~~~g~~f~~~ 212 (215)
-.+-||+|...|--+ .-.+.|+...+ |-.+...
T Consensus 117 SGGLHGVGasvVNAL----S~~~~VeV~Rd-Gk~y~q~ 149 (725)
T PRK05644 117 SGGLHGVGVSVVNAL----SEWLELTVRRD-GKIHRQE 149 (725)
T ss_pred ECCCCCCCCEEEEEC----CCEEEEEEEEC-CEEEEEE
T ss_conf 168888020321605----47089999989-9999999
No 80
>KOG1978 consensus
Probab=91.73 E-value=0.15 Score=29.76 Aligned_cols=53 Identities=13% Similarity=0.112 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHCC
Q ss_conf 123444567664687653200111112355772047999878984402458874054
Q gi|254780891|r 114 ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 (215)
Q Consensus 114 ~~~qvl~NLi~NA~~a~~~gg~I~i~~~~~~~~~~i~V~D~G~Gi~~~e~~~~~~~~ 170 (215)
.+.-++--|+.|+++|.. ..|.|.+... +.-.|+|+|+|.||. +.+++-+--.
T Consensus 20 sl~sAVKELvENSiDAGA--T~I~I~~kdy-G~d~IEV~DNG~GI~-~~n~~~l~lk 72 (672)
T KOG1978 20 SLVSAVKELVENSIDAGA--TAIDIKVKDY-GSDSIEVSDNGSGIS-ATDFEGLALK 72 (672)
T ss_pred CHHHHHHHHHHCCCCCCC--CEEEEECCCC-CCCEEEEECCCCCCC-CCCHHHHHHH
T ss_conf 589999999863703477--5255753787-743289804888877-3310344434
No 81
>COG5381 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.69 E-value=0.24 Score=28.49 Aligned_cols=87 Identities=14% Similarity=0.114 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCHHHH-----------------HHHHCCCCCCCCC
Q ss_conf 23444567664687653200111112355772047999878984402458-----------------8740545457899
Q gi|254780891|r 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF-----------------TQIVDGNVESTID 177 (215)
Q Consensus 115 ~~qvl~NLi~NA~~a~~~gg~I~i~~~~~~~~~~i~V~D~G~Gi~~~e~~-----------------~~~~~~~~~~~~~ 177 (215)
..-+..-|+.||+||... |.|.|++.-......+.|++--++-. ..+| +|+-..-......
T Consensus 64 vgYl~NELiENAVKfra~-geIvieasl~s~~f~~kvsN~vd~~t-~~~f~~ll~~it~gDP~dLlieRiEanA~~~d~~ 141 (184)
T COG5381 64 VGYLANELIENAVKFRAT-GEIVIEASLYSHKFIFKVSNIVDLPT-TIDFENLLKVITEGDPLDLLIERIEANALESDCE 141 (184)
T ss_pred HHHHHHHHHHHHHCCCCC-CCEEEEEEECCCEEEEEECCCCCCCC-HHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCC
T ss_conf 889899999866601579-85899998314068887303578851-8889999999860792999999998603588876
Q ss_pred CCCHHHHHHHHHHHHCCCEEEEEEECCCC
Q ss_conf 87204999999999709879999877992
Q gi|254780891|r 178 SHDIQFYYVILLAHENKIRLLPEIIDDHN 206 (215)
Q Consensus 178 g~GlGl~~~~~i~~~~gG~i~v~~~~~~g 206 (215)
|+||||- .+...+|.+..---.+..|
T Consensus 142 gSglGLL---TlmsDYgA~faWiF~~~~~ 167 (184)
T COG5381 142 GSGLGLL---TLMSDYGAQFAWIFVPVSG 167 (184)
T ss_pred CCCCCCE---EHHHHHCCEEEEEEECCCC
T ss_conf 5664100---0123423326899835677
No 82
>PTZ00108 DNA topoisomerase II; Provisional
Probab=91.40 E-value=0.2 Score=28.99 Aligned_cols=76 Identities=13% Similarity=0.141 Sum_probs=44.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHH--------CCCCCCCCCCCCCEEEEEEECCCCCCCH----------HH-HHHHHCC-C
Q ss_conf 0012344456766468765320--------0111112355772047999878984402----------45-8874054-5
Q gi|254780891|r 112 SRERAKILLNLFMVAHASLPRG--------GKVTISVQDSKNENIFSLKINGNLARFP----------EK-FTQIVDG-N 171 (215)
Q Consensus 112 ~~~~~qvl~NLi~NA~~a~~~g--------g~I~i~~~~~~~~~~i~V~D~G~Gi~~~----------e~-~~~~~~~-~ 171 (215)
..-+.++|.-+|.||.+...+. ..|.|++.. +.-.|+|+|+|.||++. |. |..+..+ .
T Consensus 56 vPGLyKIFDEILVNAaDNk~Rd~~~~~~pmt~IKVtID~--eng~ISV~NNGRGIPVeiH~kekvyvPELIFGhLlTGsN 133 (1506)
T PTZ00108 56 VPGLYKIFDEIIVNAADVKAREKEKSENPMTCIKIEINK--DNKKISVYNDGEGIPVDIHKEMNIYVPHMIFGELLTSDN 133 (1506)
T ss_pred CCHHHHHHHHHHCCCHHHHHCCCCCCCCCCCEEEEEEEC--CCCEEEEEECCCCCCCCCCCCCCCCHHHHHHCCCCCCCC
T ss_conf 653475444564151444320754356876659999967--899799997999524368776797472686520767678
Q ss_pred CCC-----CCCCCCHHHHHHHHH
Q ss_conf 457-----899872049999999
Q gi|254780891|r 172 VES-----TIDSHDIQFYYVILL 189 (215)
Q Consensus 172 ~~~-----~~~g~GlGl~~~~~i 189 (215)
|.. ..+-+|+|.-+|--+
T Consensus 134 FDDdeyKVSGGrNGvGAKLvNIF 156 (1506)
T PTZ00108 134 YDDAEDRITGGRNGFGAKLTNIF 156 (1506)
T ss_pred CCCCCCEECCCCCCCCEEEEEEC
T ss_conf 78995634488887245787862
No 83
>PTZ00109 DNA gyrase subunit b; Provisional
Probab=89.33 E-value=0.25 Score=28.31 Aligned_cols=46 Identities=11% Similarity=0.163 Sum_probs=35.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHH--CCCCCCCCCCCCCEEEEEEECCCCCCC
Q ss_conf 0012344456766468765320--011111235577204799987898440
Q gi|254780891|r 112 SRERAKILLNLFMVAHASLPRG--GKVTISVQDSKNENIFSLKINGNLARF 160 (215)
Q Consensus 112 ~~~~~qvl~NLi~NA~~a~~~g--g~I~i~~~~~~~~~~i~V~D~G~Gi~~ 160 (215)
..-+.+++.-++.||++=.-.| ..|.|.+..++. ++|+|+|.||+.
T Consensus 83 ~~GlHHlv~EIvDNSvDEalaG~c~~I~V~l~~DgS---vtV~DnGRGIPv 130 (941)
T PTZ00109 83 VKGLHQILFEIIDNSVDEYNNFECNEIKIVIHKDDS---VTIEDNGRGIPC 130 (941)
T ss_pred CCCCCCEEEEEHHCHHHHHHCCCCCEEEEEEECCCC---EEEEECCCCCCC
T ss_conf 986321221001256879861899668999947997---899889976788
No 84
>TIGR01059 gyrB DNA gyrase, B subunit; InterPro: IPR011557 DNA topoisomerases regulate the number of topological links between two DNA strands (i.e. change the number of superhelical turns) by catalysing transient single- or double-strand breaks, crossing the strands through one another, then resealing the breaks. These enzymes have several functions: to remove DNA supercoils during transcription and DNA replication; for strand breakage during recombination; for chromosome condensation; and to disentangle intertwined DNA during mitosis , . DNA topoisomerases are divided into two classes: type I enzymes (5.99.1.2 from EC; topoisomerases I, III and V) break single-strand DNA, and type II enzymes (5.99.1.3 from EC; topoisomerases II, IV and VI) break double-strand DNA . Type II topoisomerases are ATP-dependent enzymes, and can be subdivided according to their structure and reaction mechanisms: type IIA (topoisomerase II or gyrase, and topoisomerase IV) and type IIB (topoisomerase VI). These enzymes are responsible for relaxing supercoiled DNA as well as for introducing both negative and positive supercoils . Topoisomerase II (called gyrase in bacteria) primarily introduces negative supercoils into DNA. In bacteria, topoisomerase II consists of two polypeptide subunits, gyrA and gyrB, which form a heterotetramer: (BA)2. In most eukaryotes, topoisomerase II consists of a single polypeptide, where the N- and C-terminal regions correspond to gyrB and gyrA, respectively. This entry represents the B subunit (gyrB) as found predominantly in bacteria, but does not include the topoisomerase II enzymes composed of a single polypeptide, as are found in most eukaryotes. GyrB has two functional domains: an N-terminal ATPase and a C-terminal responsible for subunit interactions, the latter differing between subunit B and single polypeptide topoisomerase II . More information about this protein can be found at Protein of the Month: DNA Topoisomerase .; GO: 0003677 DNA binding, 0003918 DNA topoisomerase (ATP-hydrolyzing) activity, 0005524 ATP binding, 0006265 DNA topological change, 0005694 chromosome.
Probab=88.71 E-value=0.23 Score=28.56 Aligned_cols=43 Identities=12% Similarity=0.194 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHH-HHHH-HCCCCCCCCCCCCCEEEEEEECCCCCCC
Q ss_conf 23444567664687-6532-0011111235577204799987898440
Q gi|254780891|r 115 RAKILLNLFMVAHA-SLPR-GGKVTISVQDSKNENIFSLKINGNLARF 160 (215)
Q Consensus 115 ~~qvl~NLi~NA~~-a~~~-gg~I~i~~~~~~~~~~i~V~D~G~Gi~~ 160 (215)
|.=+++=++.|||| |+.. -..|.|++..++. ++|.|+|.|||.
T Consensus 32 LHHlvyEVVDNaIDEAlAGyC~~I~v~i~~dgs---v~V~DnGRGIPV 76 (818)
T TIGR01059 32 LHHLVYEVVDNAIDEALAGYCDTINVTINDDGS---VTVEDNGRGIPV 76 (818)
T ss_pred CEEEEEEEECCHHHHHHCCCCCEEEEEEECCCE---EEEEECCCCCCC
T ss_conf 238999984340442006612414899962876---999858858874
No 85
>PRK05559 DNA topoisomerase IV subunit B; Reviewed
Probab=87.01 E-value=0.23 Score=28.56 Aligned_cols=44 Identities=11% Similarity=0.144 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHH--HHCCCCCCCCCCCCCEEEEEEECCCCCCC
Q ss_conf 123444567664687653--20011111235577204799987898440
Q gi|254780891|r 114 ERAKILLNLFMVAHASLP--RGGKVTISVQDSKNENIFSLKINGNLARF 160 (215)
Q Consensus 114 ~~~qvl~NLi~NA~~a~~--~gg~I~i~~~~~~~~~~i~V~D~G~Gi~~ 160 (215)
-+..++.-++.||++-.- ....|.|.+..++ .|+|+|+|.||+.
T Consensus 37 Gl~hi~~EIldNavDe~~~g~~~~I~V~i~~dg---sIsV~dnGrGIPv 82 (633)
T PRK05559 37 GLHHLVQEVIDNSVDEALAGHGKKIEVTLHADG---SVSVRDNGRGIPV 82 (633)
T ss_pred CCEEEEEEEEECHHHHHHCCCCCEEEEEECCCC---EEEEEECCCCCCC
T ss_conf 562888776551142765078976999997898---4999989965455
No 86
>KOG0019 consensus
Probab=86.14 E-value=2.6 Score=21.90 Aligned_cols=75 Identities=17% Similarity=0.283 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHH------------HCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHH----------H-CC----
Q ss_conf 445676646876532------------00111112355772047999878984402458874----------0-54----
Q gi|254780891|r 118 ILLNLFMVAHASLPR------------GGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI----------V-DG---- 170 (215)
Q Consensus 118 vl~NLi~NA~~a~~~------------gg~I~i~~~~~~~~~~i~V~D~G~Gi~~~e~~~~~----------~-~~---- 170 (215)
-+.-|+.||-+|.+. +....|+...+.+.-.++|.|+|.||.-++....+ | ..
T Consensus 61 FlRELISNaSDAldKiRy~~lt~~~~~~~~l~I~i~~nk~~~tlti~DtGIGMTk~dLvnnLGTIAkSGtK~Fmealkea 140 (656)
T KOG0019 61 FLRELISNASDALEKLRYLELKGDEKALPELEIRIITNKDKRTITIQDTGIGMTKEDLVNNLGTIAKSGSKAFLEALKEA 140 (656)
T ss_pred HHHHHHCCCCCHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHC
T ss_conf 88765314640477788776247433566326896158876558998447776889998655156434658999988763
Q ss_pred CCCC-CCCCCCHHHHHHHHHHHH
Q ss_conf 5457-899872049999999997
Q gi|254780891|r 171 NVES-TIDSHDIQFYYVILLAHE 192 (215)
Q Consensus 171 ~~~~-~~~g~GlGl~~~~~i~~~ 192 (215)
.... -.+-.|+|+|=+...++.
T Consensus 141 ~ad~~~IGQFGvGFYSaylVAdk 163 (656)
T KOG0019 141 EAESNLIGQFGVGFYSAFMVADR 163 (656)
T ss_pred CCCHHHHHHCCCCHHHHHHHHHE
T ss_conf 44111221101004566651232
No 87
>COG0187 GyrB Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [DNA replication, recombination, and repair]
Probab=84.45 E-value=0.46 Score=26.64 Aligned_cols=44 Identities=7% Similarity=0.123 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHH--HHCCCCCCCCCCCCCEEEEEEECCCCCCC
Q ss_conf 123444567664687653--20011111235577204799987898440
Q gi|254780891|r 114 ERAKILLNLFMVAHASLP--RGGKVTISVQDSKNENIFSLKINGNLARF 160 (215)
Q Consensus 114 ~~~qvl~NLi~NA~~a~~--~gg~I~i~~~~~~~~~~i~V~D~G~Gi~~ 160 (215)
.+.-++.-++.||++=.- ....|.|.+..++. ++|.|+|.||+.
T Consensus 36 GLhHlv~EVvDNsiDEalaG~~~~I~V~l~~d~s---isV~DnGRGIPv 81 (635)
T COG0187 36 GLHHLVWEVVDNSIDEALAGYADRIDVTLHEDGS---ISVEDNGRGIPV 81 (635)
T ss_pred CCEEEEEEEEECCHHHHHHCCCCEEEEEECCCCE---EEEEECCCCCCC
T ss_conf 6504686763130747863868578999947980---899878987765
No 88
>KOG0020 consensus
Probab=83.96 E-value=0.87 Score=24.87 Aligned_cols=75 Identities=17% Similarity=0.284 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHH--------------HCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHH---------------HH
Q ss_conf 445676646876532--------------0011111235577204799987898440245887---------------40
Q gi|254780891|r 118 ILLNLFMVAHASLPR--------------GGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ---------------IV 168 (215)
Q Consensus 118 vl~NLi~NA~~a~~~--------------gg~I~i~~~~~~~~~~i~V~D~G~Gi~~~e~~~~---------------~~ 168 (215)
-+.-||.||-+|.+. ...++|.+..+...-.+.|+|+|.||.-.+.+.. .-
T Consensus 99 FLRELISNASDAlDKIRllaLtd~~~L~~~~el~ikIK~Dke~klLhi~DtGiGMT~edLi~NLGTIAkSGTs~Fl~Km~ 178 (785)
T KOG0020 99 FLRELISNASDALDKIRLLALTDKDVLGETEELEIKIKADKEKKLLHITDTGIGMTREDLIKNLGTIAKSGTSEFLEKMQ 178 (785)
T ss_pred HHHHHHHHHHHHHHHEEEEECCCHHHHCCCCCEEEEEEECHHHCEEEEECCCCCCCHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 99999731366655510111168657275712699986220107346751667852999997665551145799999853
Q ss_pred CCCCCC-----CCCCCCHHHHHHHHHHHH
Q ss_conf 545457-----899872049999999997
Q gi|254780891|r 169 DGNVES-----TIDSHDIQFYYVILLAHE 192 (215)
Q Consensus 169 ~~~~~~-----~~~g~GlGl~~~~~i~~~ 192 (215)
++.... -.+-.|+|+|-+..+|..
T Consensus 179 ~~~~~~~~~~dlIGQFGVGFYsAfLVAD~ 207 (785)
T KOG0020 179 DSGDSEGLMNDLIGQFGVGFYSAFLVADR 207 (785)
T ss_pred CCCCCHHHHHHHHHHCCHHHHHHHHHCCE
T ss_conf 64321236888877505125652220016
No 89
>KOG1979 consensus
Probab=83.32 E-value=1 Score=24.42 Aligned_cols=13 Identities=0% Similarity=0.163 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 5454227999999
Q gi|254780891|r 23 CHDIISPIGAIHN 35 (215)
Q Consensus 23 aHdlrtPL~~I~~ 35 (215)
|-+||.+|-.+.+
T Consensus 271 s~~Lr~ale~VYa 283 (694)
T KOG1979 271 SDELRHALEEVYA 283 (694)
T ss_pred HHHHHHHHHHHHH
T ss_conf 5888889999999
No 90
>TIGR01055 parE_Gneg DNA topoisomerase IV, B subunit; InterPro: IPR005737 DNA topoisomerases regulate the number of topological links between two DNA strands (i.e. change the number of superhelical turns) by catalysing transient single- or double-strand breaks, crossing the strands through one another, then resealing the breaks. These enzymes have several functions: to remove DNA supercoils during transcription and DNA replication; for strand breakage during recombination; for chromosome condensation; and to disentangle intertwined DNA during mitosis , . DNA topoisomerases are divided into two classes: type I enzymes (5.99.1.2 from EC; topoisomerases I, III and V) break single-strand DNA, and type II enzymes (5.99.1.3 from EC; topoisomerases II, IV and VI) break double-strand DNA . Type II topoisomerases are ATP-dependent enzymes, and can be subdivided according to their structure and reaction mechanisms: type IIA (topoisomerase II or gyrase, and topoisomerase IV) and type IIB (topoisomerase VI). These enzymes are responsible for relaxing supercoiled DNA as well as for introducing both negative and positive supercoils . This entry represents subunit B (parE) of topoisomerase IV from Gram negative bacteria. Topoisomerase IV primarily decatenates DNA and relaxes positive supercoils, which is important in bacteria, where the circular chromosome becomes catenated, or linked, during replication . Topoisomerase IV consists of two polypeptide subunits, parC (subunit A), which is homologous to gyrA of topoisomerase II, and parE (subunit B), which is homologous to gyrB of topoisomerase II. More information about this protein can be found at Protein of the Month: DNA Topoisomerase .; GO: 0003677 DNA binding, 0003918 DNA topoisomerase (ATP-hydrolyzing) activity, 0005524 ATP binding, 0006265 DNA topological change, 0005694 chromosome.
Probab=81.25 E-value=1.5 Score=23.41 Aligned_cols=74 Identities=12% Similarity=0.130 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHHHH--CCCCCCCCCCCCCEEEEEEECCCCCCCHH--------HHH----HHH------CCCCCC
Q ss_conf 2344456766468765320--01111123557720479998789844024--------588----740------545457
Q gi|254780891|r 115 RAKILLNLFMVAHASLPRG--GKVTISVQDSKNENIFSLKINGNLARFPE--------KFT----QIV------DGNVES 174 (215)
Q Consensus 115 ~~qvl~NLi~NA~~a~~~g--g~I~i~~~~~~~~~~i~V~D~G~Gi~~~e--------~~~----~~~------~~~~~~ 174 (215)
..-+....|.||++=.-.| ..|.|..+.+.. |+|.|+|.||++|- .++ ++- +..+..
T Consensus 34 ~~HL~~EV~DN~~DEA~AGfA~~i~v~lH~D~S---i~v~D~GRG~PvD~HP~~P~~sa~EvILt~LHaG~KFSN~~Y~~ 110 (647)
T TIGR01055 34 PNHLVQEVIDNSVDEALAGFASKIEVILHQDQS---IEVIDNGRGMPVDIHPKEPGVSAVEVILTKLHAGGKFSNKNYEF 110 (647)
T ss_pred CHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCE---EEEEECCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCC
T ss_conf 013455544333555540653078899828961---79988883034427888888862355643005785211444013
Q ss_pred CCCCCCHHHHHHHHHHH
Q ss_conf 89987204999999999
Q gi|254780891|r 175 TIDSHDIQFYYVILLAH 191 (215)
Q Consensus 175 ~~~g~GlGl~~~~~i~~ 191 (215)
..+-||+|...|-.+-+
T Consensus 111 sGGLHGVGISVVNALS~ 127 (647)
T TIGR01055 111 SGGLHGVGISVVNALSK 127 (647)
T ss_pred CCCEECCHHHHEEECCC
T ss_conf 68600214320220132
No 91
>KOG0355 consensus
Probab=69.89 E-value=5.7 Score=19.70 Aligned_cols=47 Identities=26% Similarity=0.136 Sum_probs=30.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHH-HCCCCCCCCCCCCCEEEEEEECCCCCC
Q ss_conf 001234445676646876532-001111123557720479998789844
Q gi|254780891|r 112 SRERAKILLNLFMVAHASLPR-GGKVTISVQDSKNENIFSLKINGNLAR 159 (215)
Q Consensus 112 ~~~~~qvl~NLi~NA~~a~~~-gg~I~i~~~~~~~~~~i~V~D~G~Gi~ 159 (215)
..-+.+++.-++.||.+ -.. .+-=++.+.-+.+...++|.|+|.||+
T Consensus 51 ~pGl~ki~dEilvNaad-k~rd~~m~~i~v~i~~e~~~isv~nnGkGIP 98 (842)
T KOG0355 51 VPGLYKIFDEILVNAAD-KQRDPKMNTIKVTIDKEKNEISVYNNGKGIP 98 (842)
T ss_pred CCCHHHHHHHHHHCCCC-CCCCCCCCEEEEEECCCCCEEEEEECCCCCE
T ss_conf 87178888998603323-2248776526888716776799995797213
No 92
>TIGR00169 leuB 3-isopropylmalate dehydrogenase; InterPro: IPR004429 Several NAD- or NADP-dependent dehydrogenases, including 3-isopropylmalate dehydrogenase, tartrate dehydrogenase, and the dimeric forms of isocitrate dehydrogenase, share a nucleotide binding domain unrelated to that of lactate dehydrogenase and its homologs. These enzymes dehydrogenate their substates at a H-C-OH site adjacent to a H-C-COOH site; the latter carbon, now adjacent to a carbonyl group, readily decarboxylates. Among these decarboxylating dehydrogenases of hydroxyacids, overall sequence homology indicates evolutionary history rather than actual substrate or cofactor specifity, which may be toggled experimentally by replacement of just a few amino acids. 3-isopropylmalate dehydrogenase is an NAD-dependent enzyme and should have a sequence resembling HGSAPDI around residue 340. The subtrate binding loop should include a sequence resembling E[KQR]X(0,1)LLXXR around residue 115.; GO: 0003862 3-isopropylmalate dehydrogenase activity, 0009098 leucine biosynthetic process, 0005737 cytoplasm.
Probab=66.13 E-value=10 Score=18.09 Aligned_cols=40 Identities=20% Similarity=0.174 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 4542279999999999961443014789888999999998
Q gi|254780891|r 24 HDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR 63 (215)
Q Consensus 24 HdlrtPL~~I~~~~elL~~~~~~~~~~~~i~~~~~~~~~l 63 (215)
-++.||++.|.+.+-||+-.-..++..+.|+...+.+.+-
T Consensus 301 kgiANP~A~ILSAAMlLry~f~~~~~a~~iE~Av~kvL~~ 340 (370)
T TIGR00169 301 KGIANPIAQILSAAMLLRYSFNLEEAADAIEAAVKKVLAE 340 (370)
T ss_pred CCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_conf 7886568999999999985079068999999999998652
No 93
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA; InterPro: IPR010222 This entry represents HrpA, one of two related but uncharacterised DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterised, is about 800 amino acids long. Related characterised eukaryotic proteins are RNA helicases associated with pre-mRNA processing.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity.
Probab=57.73 E-value=2.1 Score=22.40 Aligned_cols=26 Identities=19% Similarity=0.386 Sum_probs=23.2
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHH
Q ss_conf 87999-997745454227999999999
Q gi|254780891|r 13 DLVAL-LCSRICHDIISPIGAIHNSLE 38 (215)
Q Consensus 13 ~laal-las~IaHdlrtPL~~I~~~~e 38 (215)
+|||- +|++||-||.|||+...||-=
T Consensus 123 RlAAR~VA~R~AeELgtplGe~VGYkV 149 (1320)
T TIGR01967 123 RLAARSVAERVAEELGTPLGELVGYKV 149 (1320)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCEE
T ss_conf 889999999999983889886132036
No 94
>pfam07568 HisKA_2 Histidine kinase. This is the dimerization and phosphoacceptor domain of a sub-family of histidine kinases. It shares sequence similarity with pfam00512 and pfam07536. It is usually found adjacent to a C-terminal ATPase domain (pfam02518). This domain is found in a wide range of Bacteria and also several Archaea.
Probab=50.24 E-value=19 Score=16.39 Aligned_cols=50 Identities=18% Similarity=0.206 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 45454227999999999996144301478988899999999863110011
Q gi|254780891|r 22 ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAF 71 (215)
Q Consensus 22 IaHdlrtPL~~I~~~~elL~~~~~~~~~~~~i~~~~~~~~~l~~~~r~~~ 71 (215)
|-|=+||-|..|.+.+.+=.....+++....+.+...++..+-..-+..+
T Consensus 2 v~HRVKNnLq~i~sll~lq~~~~~~~~~~~~l~~~~~RI~a~a~vH~~Ly 51 (76)
T pfam07568 2 IHHRVKNNLQVISSLLRLQARRAKDEEVKEALRESQNRVLSMALIHEELY 51 (76)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 03889857999999999873425999999999999999999999999997
No 95
>TIGR01704 MTA/SAH-Nsdase MTA/SAH nucleosidase; InterPro: IPR010049 This entry represents the enzyme 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase which acts on its two substrates at the same active site. This enzyme is involved in the recycling of the components of S-adenosylmethionine after it has donated one of its two non-ribose sulphur ligands to an acceptor. In the case of 5'-methylthioadenosine this represents the first step of the methionine salvage pathway in bacteria , ,]. This enzyme is widely distributed in bacteria. ; GO: 0008782 adenosylhomocysteine nucleosidase activity, 0008930 methylthioadenosine nucleosidase activity, 0009164 nucleoside catabolic process, 0019509 methionine salvage.
Probab=44.06 E-value=7.8 Score=18.85 Aligned_cols=44 Identities=9% Similarity=0.258 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 977454542279999999999961443014789888999999998
Q gi|254780891|r 19 CSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR 63 (215)
Q Consensus 19 as~IaHdlrtPL~~I~~~~elL~~~~~~~~~~~~i~~~~~~~~~l 63 (215)
.+.|||++++|--.|+...+.-..+.--.- -+.+...+.+-..|
T Consensus 178 ~A~VCH~F~~PFVV~RA~SD~A~~~SH~SF-D~FL~~AA~~S~~l 221 (229)
T TIGR01704 178 VAQVCHNFKVPFVVVRALSDVADKESHLSF-DEFLEVAAKQSSLL 221 (229)
T ss_pred HHHHHHCCCCCEEEEEEECCCCCCCCCCCH-HHHHHHHHHHHHHH
T ss_conf 977520589986899730000277465358-89999999877999
No 96
>TIGR02153 gatD_arch glutamyl-tRNA(Gln) amidotransferase, subunit D; InterPro: IPR011878 This peptide is found only in the Archaea. It is part of a heterodimer, with GatD (IPR004414 from INTERPRO), that acts as an amidotransferase on misacylated Glu-tRNA(Gln) to produce Gln-tRNA(Gln). The analogous amidotransferase found in bacteria is the GatABC system, although GatABC homologs in the Archaea appear to act instead on Asp-tRNA(Asn) .; GO: 0006450 regulation of translational fidelity.
Probab=43.61 E-value=14 Score=17.14 Aligned_cols=52 Identities=13% Similarity=0.193 Sum_probs=38.9
Q ss_pred HHHHHHHC-CCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHCCCCCC-CCCCCCHH
Q ss_conf 87653200-1111123557720479998789844024588740545457-89987204
Q gi|254780891|r 127 HASLPRGG-KVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVES-TIDSHDIQ 182 (215)
Q Consensus 127 ~~a~~~gg-~I~i~~~~~~~~~~i~V~D~G~Gi~~~e~~~~~~~~~~~~-~~~g~GlG 182 (215)
.+|..++. .+.++...++.-..|.+. |||. |+.++-+.+..+.. =..|||||
T Consensus 267 ~dYr~r~~~~le~~~~~EekVaLvKfy---PG~~-p~il~~~~d~GykGiViEGTGLG 320 (413)
T TIGR02153 267 EDYRRRGEKELELDDKFEEKVALVKFY---PGLD-PEILEFLVDKGYKGIVIEGTGLG 320 (413)
T ss_pred EEEEECCCCCCCCCCCCCCEEEEEEEC---CCCC-HHHHHHHHCCCCEEEEEECCCCC
T ss_conf 211313776532068877137999843---8988-88999985187159998337875
No 97
>KOG3689 consensus
Probab=42.45 E-value=20 Score=16.19 Aligned_cols=36 Identities=28% Similarity=0.636 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHH
Q ss_conf 9999967687999997745454-------------22799999999999
Q gi|254780891|r 5 ICFNLSSMDLVALLCSRICHDI-------------ISPIGAIHNSLELL 40 (215)
Q Consensus 5 ~~~~~~~~~laallas~IaHdl-------------rtPL~~I~~~~elL 40 (215)
++..+..++..+++.|.+|||+ ++||+.+.+....|
T Consensus 452 L~~~fTdlEiLalliAalcHDlDHrGtNN~f~iks~s~LA~lY~~~SvL 500 (707)
T KOG3689 452 LQNKFTDLEILALLIAALCHDLDHRGTNNSYLIKSNSPLAQLYNDSSVL 500 (707)
T ss_pred HHHHCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCHHHHHHCCCCHH
T ss_conf 7765476999999999997068999877388871488999984775087
No 98
>COG2865 Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen [Transcription]
Probab=38.25 E-value=29 Score=15.22 Aligned_cols=89 Identities=20% Similarity=0.265 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHH---HHHCCCCCCCCCCCCCEEEEEEECC---CCCCCHHHHHH------------HHCCCCCCCCC
Q ss_conf 344456766468765---3200111112355772047999878---98440245887------------40545457899
Q gi|254780891|r 116 AKILLNLFMVAHASL---PRGGKVTISVQDSKNENIFSLKING---NLARFPEKFTQ------------IVDGNVESTID 177 (215)
Q Consensus 116 ~qvl~NLi~NA~~a~---~~gg~I~i~~~~~~~~~~i~V~D~G---~Gi~~~e~~~~------------~~~~~~~~~~~ 177 (215)
..++.-++.||+-|- ..++.|.|..+.+. +.|++.| +|+. ++++.+ .|....- ..
T Consensus 272 ~~alREai~NAv~HRDYs~~~~~v~I~iydDR----ieI~NPGgl~~gi~-~~~l~~~~s~~RNp~LA~~l~~~~l--iE 344 (467)
T COG2865 272 LEALREAIINAVIHRDYSIRGRNVHIEIYDDR----IEITNPGGLPPGIT-PEDLLKGRSKSRNPVLAKVLRDMGL--IE 344 (467)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCEEEEEECCE----EEEECCCCCCCCCC-HHHCCCCCCCCCCHHHHHHHHHHHH--HH
T ss_conf 89999999888885223457873389997786----89978998999988-6670567876567899999998434--98
Q ss_pred CCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEE
Q ss_conf 872049999999997098799998779926999994
Q gi|254780891|r 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 (215)
Q Consensus 178 g~GlGl~~~~~i~~~~gG~i~v~~~~~~g~~f~~~l 213 (215)
-.|-|.--.+.+++.||.- ..+-..+. ..|++++
T Consensus 345 ~~GSGi~rm~~~~~~~gl~-~p~f~~~~-~~~~~~~ 378 (467)
T COG2865 345 ERGSGIRRMFDLMEENGLP-KPEFEEDN-DYVTVIL 378 (467)
T ss_pred HHCCCHHHHHHHHHHCCCC-CCEEECCC-CEEEEEE
T ss_conf 7375089999999972999-96245468-7599998
No 99
>pfam07492 Trehalase_Ca-bi Neutral trehalase Ca2+ binding domain. Neutral trehalases mobilize trehalose accumulated by fungal cells as a protective and storage carbohydrate. This family represents a calcium-binding domain similar to EF hand. Residues 97 and 108 in neutral trehalase from Schizosaccharomyces pombe have been implicated in this interaction. It is thought that this domain may provide a general mechanism for regulating neutral trehalase activity in yeasts and filamentous fungi.
Probab=38.10 E-value=20 Score=16.25 Aligned_cols=18 Identities=11% Similarity=0.289 Sum_probs=14.8
Q ss_pred CCCCCCEEEEEEECCCCC
Q ss_conf 355772047999878984
Q gi|254780891|r 141 QDSKNENIFSLKINGNLA 158 (215)
Q Consensus 141 ~~~~~~~~i~V~D~G~Gi 158 (215)
+..++...|+|+|+||.+
T Consensus 8 EDTD~n~QITIeD~GPKv 25 (30)
T pfam07492 8 EDTDGNKQITIEDTGPKV 25 (30)
T ss_pred CCCCCCEEEEEECCCCEE
T ss_conf 156887078886389837
No 100
>PRK08383 putative monovalent cation/H+ antiporter subunit E; Reviewed
Probab=35.96 E-value=31 Score=14.99 Aligned_cols=60 Identities=10% Similarity=0.090 Sum_probs=38.0
Q ss_pred CCCCHHHH-HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHCC
Q ss_conf 01000123-444567664687653200111112355772047999878984402458874054
Q gi|254780891|r 109 IDLSRERA-KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 (215)
Q Consensus 109 ~~~~~~~~-qvl~NLi~NA~~a~~~gg~I~i~~~~~~~~~~i~V~D~G~Gi~~~e~~~~~~~~ 170 (215)
..+|.++. ..-.-++.|.+.-+| |++++.+..++....+-.-|-..+...+|..+.+..+
T Consensus 97 v~v~~~l~~d~~~t~lansITLTP--GTltvdv~~d~~~lyVH~idv~~~~~~~e~~~~I~~~ 157 (167)
T PRK08383 97 VRVPVDLENDAQYTILSNSITLTP--GTLTIEACPEEKALYVHWINIPEGLEWPESSEPVSGP 157 (167)
T ss_pred EEEECCCCCHHHHHHHHHHHCCCC--CEEEEEECCCCCEEEEEEEECCCCCCCHHHHHHHHHH
T ss_conf 998447788398999986331689--7799997499987999998789877704568898677
No 101
>TIGR00519 asnASE_I L-asparaginases, type I; InterPro: IPR006033 Two related families of asparaginase are designated type I and type II according to the terminology in Escherichia coli, which has both: L-asparaginase I is a low-affinity enzyme found in the cytoplasm, while L-asparaginase II is a high-affinity secreted enzyme synthesized with a cleavable signal sequence. This family includes L-asparaginases related to type I of E. coli. Archaeal putative asparaginases are of this type but contain an extra ~80 residues in a conserved N-terminal region. These archaeal homologs are included in this family. ; GO: 0004067 asparaginase activity, 0006520 amino acid metabolic process.
Probab=35.19 E-value=28 Score=15.29 Aligned_cols=56 Identities=5% Similarity=0.080 Sum_probs=36.1
Q ss_pred HHHHHHHH-HHHCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHCCCCCC-CCCCCCHH
Q ss_conf 66468765-32001111123557720479998789844024588740545457-89987204
Q gi|254780891|r 123 FMVAHASL-PRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVES-TIDSHDIQ 182 (215)
Q Consensus 123 i~NA~~a~-~~gg~I~i~~~~~~~~~~i~V~D~G~Gi~~~e~~~~~~~~~~~~-~~~g~GlG 182 (215)
-.|.-.+- +..+++.|.......-+.|.+- |||+ ||.++-+.+..+.. =..|+|+|
T Consensus 198 ~~L~~~~~~~g~~~l~v~~~le~~V~lik~y---PGl~-~di~~~~~~~~YkGiViegtG~G 255 (347)
T TIGR00519 198 EYLKEVYRKRGEDELEVDTRLEEKVALIKLY---PGLS-PDIIRAYLSKGYKGIVIEGTGLG 255 (347)
T ss_pred EECCCCCCCCCCCEEEECCCCCCCEEEEEEC---CCCC-HHHHHHHCCCCCEEEEEEECCCC
T ss_conf 2246667889987689726677514899866---8988-89999862699348998204678
No 102
>TIGR00021 rpiA ribose 5-phosphate isomerase A; InterPro: IPR004788 Ribose 5-phosphate isomerase (5.3.1.6 from EC), also known as phosphoriboisomerase, catalyses the conversion of D-ribose 5-phosphate to D-ribulose 5-phosphate in the non-oxidative branch of the pentose phosphate pathway.; GO: 0004751 ribose-5-phosphate isomerase activity, 0009052 pentose-phosphate shunt non-oxidative branch.
Probab=28.04 E-value=35 Score=14.65 Aligned_cols=62 Identities=18% Similarity=0.085 Sum_probs=43.9
Q ss_pred CCC-CCCCCCCHHHHHHHH--HHHHHHHHHHHHH-CCCCCCCC--CCCCCEEEEEEECCCCCCCHHHHHH--HHCCC
Q ss_conf 100-000010001234445--6766468765320-01111123--5577204799987898440245887--40545
Q gi|254780891|r 103 SWT-GEKIDLSRERAKILL--NLFMVAHASLPRG-GKVTISVQ--DSKNENIFSLKINGNLARFPEKFTQ--IVDGN 171 (215)
Q Consensus 103 ~~~-~~~~~~~~~~~qvl~--NLi~NA~~a~~~g-g~I~i~~~--~~~~~~~i~V~D~G~Gi~~~e~~~~--~~~~~ 171 (215)
.+. +|...+|.-..+++. .+-. | -. -.| +..+++-. ..++ .-|+|+|.-| +|-.|.+ +-+|.
T Consensus 133 ~fppLPvEV~Pf~~~~~~~~l~~~~-A-~l-l~Gl~~~~LR~~~v~~~~---~~~TDNGN~I-lD~~~~~~~i~dP~ 202 (236)
T TIGR00021 133 KFPPLPVEVVPFAWKATARRLKLEK-A-VL-LLGLGEPTLRKGKVNKGG---PVVTDNGNYI-LDCHFGKEIIPDPE 202 (236)
T ss_pred ECCCCCEEEECCCCHHHHHHHHHHH-H-HH-HCCCCEEEEEECCCCCCC---EEEEECCCEE-EEEECCCCCCCCHH
T ss_conf 0686047880368078999899888-7-65-237712789533227980---1796079789-99776987578968
No 103
>pfam00233 PDEase_I 3'5'-cyclic nucleotide phosphodiesterase.
Probab=27.36 E-value=27 Score=15.42 Aligned_cols=23 Identities=26% Similarity=0.416 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99967687999997745454227
Q gi|254780891|r 7 FNLSSMDLVALLCSRICHDIISP 29 (215)
Q Consensus 7 ~~~~~~~laallas~IaHdlrtP 29 (215)
.-++..+..+++.|.++||+.-|
T Consensus 25 ~~l~~~e~~alliAAl~HDv~Hp 47 (237)
T pfam00233 25 RYLTDLEILALLFAAAIHDVDHR 47 (237)
T ss_pred HHCCHHHHHHHHHHHHHCCCCCC
T ss_conf 31999999999999997346798
No 104
>COG0813 DeoD Purine-nucleoside phosphorylase [Nucleotide transport and metabolism]
Probab=27.30 E-value=44 Score=14.07 Aligned_cols=41 Identities=12% Similarity=-0.065 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCC
Q ss_conf 3444567664687653200111112355772047999878984
Q gi|254780891|r 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA 158 (215)
Q Consensus 116 ~qvl~NLi~NA~~a~~~gg~I~i~~~~~~~~~~i~V~D~G~Gi 158 (215)
..+-.|++.|++.+....|-.-.+-.. ..-.++|.-+|-||
T Consensus 27 K~iAetfLe~~~~vnevR~mlgfTGtY--KGk~iSimg~GmGi 67 (236)
T COG0813 27 KYIAETFLENAVCVNEVRGMLGFTGTY--KGKKISVMGHGMGI 67 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCEE--CCCEEEEEEECCCC
T ss_conf 899999874230223210001034134--38478998734887
No 105
>PRK07831 short chain dehydrogenase; Provisional
Probab=27.10 E-value=41 Score=14.23 Aligned_cols=18 Identities=0% Similarity=-0.164 Sum_probs=7.5
Q ss_pred CHHHHHHHHHHHHCCCEE
Q ss_conf 204999999999709879
Q gi|254780891|r 180 DIQFYYVILLAHENKIRL 197 (215)
Q Consensus 180 GlGl~~~~~i~~~~gG~i 197 (215)
+.=+||+..-+.-..|+.
T Consensus 236 ~~v~fLaSd~s~~iTGq~ 253 (261)
T PRK07831 236 AVIAFLASDYSSYLTGEV 253 (261)
T ss_pred HHHHHHHCHHHCCCCCEE
T ss_conf 999999581546975738
No 106
>pfam03281 Mab-21 Mab-21 protein.
Probab=27.07 E-value=44 Score=14.05 Aligned_cols=30 Identities=13% Similarity=-0.057 Sum_probs=22.8
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 000100012344456766468765320011
Q gi|254780891|r 107 EKIDLSRERAKILLNLFMVAHASLPRGGKV 136 (215)
Q Consensus 107 ~~~~~~~~~~qvl~NLi~NA~~a~~~gg~I 136 (215)
+....++.+...|..|+.+|++.....+.|
T Consensus 120 sG~Lsa~Kils~Fr~LV~~ai~~c~~~d~v 149 (360)
T pfam03281 120 SGYLSARKIRSRFQTLVAQACDKCQYRDYV 149 (360)
T ss_pred CCCEEHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 440308999999999999985233215732
No 107
>KOG4013 consensus
Probab=22.40 E-value=54 Score=13.49 Aligned_cols=26 Identities=12% Similarity=-0.045 Sum_probs=18.2
Q ss_pred CHHHHHHHHHHHHCCCEEEEEEECCCCE
Q ss_conf 2049999999997098799998779926
Q gi|254780891|r 180 DIQFYYVILLAHENKIRLLPEIIDDHNV 207 (215)
Q Consensus 180 GlGl~~~~~i~~~~gG~i~v~~~~~~g~ 207 (215)
-=|+|+-+++++.|.|+|.|- +|.|.
T Consensus 164 ldGv~~i~~lie~hkg~i~Vm--pG~Gi 189 (255)
T KOG4013 164 LDGVYIIRELIELHKGKIDVM--PGCGI 189 (255)
T ss_pred CCCHHHHHHHHHHHCCCEEEE--CCCCC
T ss_conf 234499999999852977882--48876
No 108
>TIGR01373 soxB sarcosine oxidase, beta subunit family; InterPro: IPR006278 These sequences represent the beta subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members share the same function. The model is designated as subfamily rather than equivalog for this reason. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate . Bacterial sarcosine oxidases have been isolated from over a dozen different organisms and fall into two major classes (1) monomeric form that contains only covalent flavin and (2) heterotetrameric (alpha, beta, gamma, delta) forms that contain a covalent and noncovalent flavin, this entry represents the heterotetrameric form.; GO: 0008115 sarcosine oxidase activity, 0046653 tetrahydrofolate metabolic process.
Probab=22.23 E-value=54 Score=13.47 Aligned_cols=23 Identities=17% Similarity=0.209 Sum_probs=15.1
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHH
Q ss_conf 9977454542-2799999999999
Q gi|254780891|r 18 LCSRICHDII-SPIGAIHNSLELL 40 (215)
Q Consensus 18 las~IaHdlr-tPL~~I~~~~elL 40 (215)
|=-+++|||| |-+-+-++.+.|.
T Consensus 97 LweGLs~dLNYNvM~SqRG~~nL~ 120 (407)
T TIGR01373 97 LWEGLSQDLNYNVMFSQRGVLNLA 120 (407)
T ss_pred HHHCHHHHCCHHHHHHHHHHHHHC
T ss_conf 861200120200112133234321
No 109
>KOG3938 consensus
Probab=21.94 E-value=55 Score=13.43 Aligned_cols=30 Identities=17% Similarity=0.151 Sum_probs=24.1
Q ss_pred HHHHHCCCCCCCCCCCCCEEEEEEECCCCC
Q ss_conf 653200111112355772047999878984
Q gi|254780891|r 129 SLPRGGKVTISVQDSKNENIFSLKINGNLA 158 (215)
Q Consensus 129 a~~~gg~I~i~~~~~~~~~~i~V~D~G~Gi 158 (215)
|.-+|..-+|.+..+.+..=++|+|+|.|-
T Consensus 121 AHvkGq~kEv~v~KsedalGlTITDNG~Gy 150 (334)
T KOG3938 121 AHVKGQAKEVEVVKSEDALGLTITDNGAGY 150 (334)
T ss_pred HHHCCCCEEEEEEECCCCCCEEEEECCCCE
T ss_conf 332476306889850544303785078650
No 110
>PRK04940 hypothetical protein; Provisional
Probab=21.86 E-value=55 Score=13.42 Aligned_cols=10 Identities=0% Similarity=0.006 Sum_probs=4.5
Q ss_pred EEEEECCCCC
Q ss_conf 7999878984
Q gi|254780891|r 149 FSLKINGNLA 158 (215)
Q Consensus 149 i~V~D~G~Gi 158 (215)
+.+-.+|.-+
T Consensus 128 LvlL~~gDEV 137 (179)
T PRK04940 128 LVILSRNDEV 137 (179)
T ss_pred EEEEECCCHH
T ss_conf 9998556266
No 111
>TIGR01083 nth endonuclease III; InterPro: IPR005759 The spectrum of DNA damage caused by reactive oxygen species includes a wide variety of modifications of purine and pyrimidine bases. Among these modified bases, 7,8-dihydro-8-oxoguanine (8-oxoG) is an important mutagenic lesion. Base excision repair is a critical mechanism for preventing mutations by removing the oxidative lesion from the DNA. Escherichia coli Nth protein (endonuclease III) has an 8-oxoG DNA glycosylase/AP lyase activity which removes 8-oxoG preferentially from 8-oxoG/G mispairs. Human hNTH1 protein, a homolog of E. coli Nth protein, has similar DNA glycosylase/AP lyase activity that removes 8-oxoG from 8-oxoG/G mispairs . ; GO: 0003906 DNA-(apurinic or apyrimidinic site) lyase activity, 0006284 base-excision repair, 0005622 intracellular.
Probab=21.09 E-value=52 Score=13.62 Aligned_cols=55 Identities=9% Similarity=0.218 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHCCCCCCCCC
Q ss_conf 5676646876532001111123557720479998789844024588740545457899
Q gi|254780891|r 120 LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTID 177 (215)
Q Consensus 120 ~NLi~NA~~a~~~gg~I~i~~~~~~~~~~i~V~D~G~Gi~~~e~~~~~~~~~~~~~~~ 177 (215)
-|++.|-.=-.| .|.|.++-..-.-++.++..=......+++.+++....++...
T Consensus 120 ANVVL~~aFg~P---~iAVDTHv~Rv~~Rlgl~~~~dp~~vE~~L~~l~P~~~w~~~h 174 (192)
T TIGR01083 120 ANVVLNVAFGIP---AIAVDTHVFRVSNRLGLSKGKDPDKVEEELLKLIPKEFWTKLH 174 (192)
T ss_pred HHHHHHHHHCCC---EEEECCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCHHHCC
T ss_conf 562433442687---0574143465543313577789899999998744850012223
No 112
>COG2388 Predicted acetyltransferase [General function prediction only]
Probab=20.83 E-value=58 Score=13.29 Aligned_cols=58 Identities=16% Similarity=0.095 Sum_probs=36.2
Q ss_pred CCCCCCCCCCCCEEEEEEECCCCCC------CHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 1111123557720479998789844------024588740545457899872049999999997
Q gi|254780891|r 135 KVTISVQDSKNENIFSLKINGNLAR------FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHE 192 (215)
Q Consensus 135 ~I~i~~~~~~~~~~i~V~D~G~Gi~------~~e~~~~~~~~~~~~~~~g~GlGl~~~~~i~~~ 192 (215)
.+.+.-..++...+..+.+.|.-+. ..+..-.+...+.+....|.|++-.++...++.
T Consensus 4 ~~~~~~~~~~~~~~y~~~~~G~~~~e~~y~~~~~~~i~i~HT~V~d~lrGqGia~~L~~~al~~ 67 (99)
T COG2388 4 GMEIMEIRNGENGRYVLTDEGEVIGEATYYDRGENLIIIDHTYVPDELRGQGIAQKLVEKALEE 67 (99)
T ss_pred CCCCEEEECCCCEEEEEECCCCEEEEEEEECCCCCEEEEECCCCCHHHCCCCHHHHHHHHHHHH
T ss_conf 4431013516751899904993887888841799879985376898885874799999999999
Done!