HHsearch alignment for GI: 254780891 and conserved domain: smart00388
>smart00388 HisKA His Kinase A (phosphoacceptor) domain. Dimerisation and phosphoacceptor domain of histidine kinases.
Probab=98.02 E-value=1.3e-05 Score=55.61 Aligned_cols=49 Identities=22% Similarity=0.411 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHHHHHHH
Q ss_conf 9997745454227999999999996144301---478988899999999863
Q gi|254780891|r 17 LLCSRICHDIISPIGAIHNSLELLDEVGIED---EVMQLIRLSSMSAIIRLK 65 (215)
Q Consensus 17 llas~IaHdlrtPL~~I~~~~elL~~~~~~~---~~~~~i~~~~~~~~~l~~ 65 (215)
T Consensus 4 ~~~~~isHelrtPL~~i~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~li~ 55 (66)
T smart00388 4 EFLANLSHELRTPLTAIRGYLELLEDTELSEEQREYLETILRSAERLLRLIN 55 (66)
T ss_pred HHHHHHHHHHHCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999976987081888999988653027999999999988999999999999