HHsearch alignment for GI: 254780891 and conserved domain: smart00388

>smart00388 HisKA His Kinase A (phosphoacceptor) domain. Dimerisation and phosphoacceptor domain of histidine kinases.
Probab=98.02  E-value=1.3e-05  Score=55.61  Aligned_cols=49  Identities=22%  Similarity=0.411  Sum_probs=35.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHHHHHHH
Q ss_conf             9997745454227999999999996144301---478988899999999863
Q gi|254780891|r   17 LLCSRICHDIISPIGAIHNSLELLDEVGIED---EVMQLIRLSSMSAIIRLK   65 (215)
Q Consensus        17 llas~IaHdlrtPL~~I~~~~elL~~~~~~~---~~~~~i~~~~~~~~~l~~   65 (215)
T Consensus         4 ~~~~~isHelrtPL~~i~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~li~   55 (66)
T smart00388        4 EFLANLSHELRTPLTAIRGYLELLEDTELSEEQREYLETILRSAERLLRLIN   55 (66)
T ss_pred             HHHHHHHHHHHCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999976987081888999988653027999999999988999999999999