HHsearch alignment of GI: 254780891 and MMDB domain: 1kij_A_1-217
>1kij_A (A:1-217) DNA gyrase subunit B; topoisomerase, gyrase B-coumarin complex; HET: DNA NOV; 2.30A {Thermus thermophilus}
Probab=96.55 E-value=0.021 Score=34.78 Aligned_cols=86 Identities=10% Similarity=0.148 Sum_probs=55.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHH--HCCCCCCCCCCCCCEEEEEEECCCCCCCH----------HH-HHHHHCC------CC
Q ss_conf 001234445676646876532--00111112355772047999878984402----------45-8874054------54
Q gi|254780891|r 112 SRERAKILLNLFMVAHASLPR--GGKVTISVQDSKNENIFSLKINGNLARFP----------EK-FTQIVDG------NV 172 (215)
Q Consensus 112 ~~~~~qvl~NLi~NA~~a~~~--gg~I~i~~~~~~~~~~i~V~D~G~Gi~~~----------e~-~~~~~~~------~~ 172 (215)
...+.+++.-+|.||++.... +..|.|....++. ++|+|+|+||+.+ |. +..+..+ .+
T Consensus 30 ~~gl~~l~~Eii~NavDe~~~g~~~~i~v~~~~d~s---v~V~d~Grgip~~~~~~~~~~~~e~i~t~l~aggkf~~~~y 106 (217)
T 1kij_A 30 VEGYHHLFKEILDNAVDEALAGYATEILVRLNEDGS---LTVEDNGRGIPVDLMPEEGKPAVEVIYNTLHSGGKFEQGAY 106 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSCCEEEEEECTTSC---EEEEECSSCCCCSEETTTTEEHHHHHHHSSCEESGGGGSSC
T ss_pred CCCCEEEEEEEEECHHHHHCCCCCCEEEEEECCCCE---EEEEECCCCEECCCCCCCCCEEHEEEEEEECCCCCCCCCCC
T ss_conf 873217887666855566336999669999969986---99998886277577566795012012213113676578875
Q ss_pred CCCCCCCCHHHHHHHHHHHHCCCEEEEEEECC
Q ss_conf 57899872049999999997098799998779
Q gi|254780891|r 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDD 204 (215)
Q Consensus 173 ~~~~~g~GlGl~~~~~i~~~~gG~i~v~~~~~ 204 (215)
....+.+|+|+..+..+.+ .+.++...+
T Consensus 107 ~~sgGlhGvG~svvNAlS~----~l~v~v~r~ 134 (217)
T 1kij_A 107 KVSGGLHGVGASVVNALSE----WTVVEVFRE 134 (217)
T ss_dssp CCCSCSSTTSHHHHHHTEE----EEEEEEEET
T ss_pred CEECCCCCCCCHHHHHHHH----HEEEEEEEC
T ss_conf 1205767545178641010----159999975