HHsearch alignment of GI: 254780891 and MMDB domain: 1mu5_A_1-229
>1mu5_A (A:1-229) Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae}
Probab=99.85 E-value=3.9e-21 Score=153.75 Aligned_cols=105 Identities=10% Similarity=-0.009 Sum_probs=89.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC------CCCCCCEEEEEEECCCCCCCHHHHHHHHCCCCCC-----C--
Q ss_conf 01000123444567664687653200111112------3557720479998789844024588740545457-----8--
Q gi|254780891|r 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISV------QDSKNENIFSLKINGNLARFPEKFTQIVDGNVES-----T-- 175 (215)
Q Consensus 109 ~~~~~~~~qvl~NLi~NA~~a~~~gg~I~i~~------~~~~~~~~i~V~D~G~Gi~~~e~~~~~~~~~~~~-----~-- 175 (215)
..++.++.|++.||+.||+||++.||.+.+.. ...+..+.|+|+|+|+||+ ++...++|++|+.. +
T Consensus 27 ~~D~~rl~qIl~NLl~NAiKft~~g~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~-~e~~~~iF~~f~~~~~~~~~~~ 105 (229)
T 1mu5_A 27 PNPARALYQTVRELIENSLDATDVHGILPNIKITIDLIDDARQIYKVNVVDNGIGIP-PQEVPNAFGRVLYSSKYVNRQT 105 (229)
T ss_dssp SSHHHHHHHHHHHHHHHHHHTTGGGTCCCEEEEEEEEEETTTTEEEEEEECCSCCCC-GGGHHHHHHCCCCC-CCCCSCC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCEEEEEEEECCCCCC-HHHHHHHHHHHCCCCCCCCCCC
T ss_conf 870118999999999999975775598771699999804899679999997589989-8999999876640676564135
Q ss_pred CCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEE
Q ss_conf 998720499999999970987999987799269999941
Q gi|254780891|r 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 (215)
Q Consensus 176 ~~g~GlGl~~~~~i~~~~gG~i~v~~~~~~g~~f~~~l~ 214 (215)
..|+||||++|+.+++.|||.+.+.|+.+++++|....+
T Consensus 106 ~~G~GLGL~i~~~lv~~~~G~i~~~s~~~~~~~~~~~~~ 144 (229)
T 1mu5_A 106 RGMYGLGVKAAVLYSQMHQDKPIEIETSPVNSKRIYTFK 144 (229)
T ss_dssp SCSCTTTHHHHHHHHHHHCCCCEEEEEECTTCSEEEEEE
T ss_pred CCCCCCCHHHHHHHHHHCCCCEEEEEEECCCCCEEEEEE
T ss_conf 884440699999999973795499999628997269987