HHsearch alignment of GI: 254780891 and MMDB domain: 1th8_A_

>1th8_A (A:) Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus}
Probab=99.79  E-value=6.4e-19  Score=139.67  Aligned_cols=100  Identities=11%  Similarity=0.016  Sum_probs=85.2

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHH---HHHCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHCCCCCCC--CCCCCHHH
Q ss_conf             0100012344456766468765---320011111235577204799987898440245887405454578--99872049
Q gi|254780891|r  109 IDLSRERAKILLNLFMVAHASL---PRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST--IDSHDIQF  183 (215)
Q Consensus       109 ~~~~~~~~qvl~NLi~NA~~a~---~~gg~I~i~~~~~~~~~~i~V~D~G~Gi~~~e~~~~~~~~~~~~~--~~g~GlGl  183 (215)
                      ..++..+.|++.||+.||++|+   +.+|.|+|++...++.+.+.|+|+|+||+ |  ..++|.++++++  ..|+||||
T Consensus        34 ~~d~~~l~~vi~nli~NAi~h~~~~~~~g~I~i~~~~~~~~~~i~V~D~G~Gi~-~--~~~~f~~f~~~~~~~~G~GlGL  110 (145)
T 1th8_A           34 MDELTEIKTVVSEAVTNAIIHGYNNDPNGIVSISVIIEDGVVHLTVRDEGVGIP-D--IEEARQPLFTTKPELERSGMGF  110 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTSTTCTTSEEEEEEEEETTEEEEEEEECSSCCS-C--HHHHTCCC-------CCCSCHH
T ss_pred             HHHHHHHHHHHHHHHHHHHEEECCCCCCCEEEEEEEEECCEEEEEEECCCCCCC-C--HHCCCCCCCCCCCCCCCCCCHH
T ss_conf             789989999998863103025516899947999999817899999933767714-4--3204677740114789771049


Q ss_pred             HHHHHHHHHCCCEEEEEEECCCCEEEEEEEEC
Q ss_conf             99999999709879999877992699999419
Q gi|254780891|r  184 YYVILLAHENKIRLLPEIIDDHNVVLSALLEK  215 (215)
Q Consensus       184 ~~~~~i~~~~gG~i~v~~~~~~g~~f~~~l~~  215 (215)
                      |+++    +|+|+|+++|.+++|++|+++||.
T Consensus       111 ~ivk----~~~g~i~i~s~~g~Gt~f~i~lp~  138 (145)
T 1th8_A          111 TIME----NFMDEVIVESEVNKGTTVYLKKHG  138 (145)
T ss_dssp             HHHH----HHSSEEEEEEETTTEEEEEEEECC
T ss_pred             HHHH----HHCCEEEEEECCCCCEEEEEEECC
T ss_conf             9999----859989999759994899999898