HHsearch alignment of GI: 254780891 and MMDB domain: 1th8_A_
>1th8_A (A:) Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus}
Probab=99.79 E-value=6.4e-19 Score=139.67 Aligned_cols=100 Identities=11% Similarity=0.016 Sum_probs=85.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHHH---HHHCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHCCCCCCC--CCCCCHHH
Q ss_conf 0100012344456766468765---320011111235577204799987898440245887405454578--99872049
Q gi|254780891|r 109 IDLSRERAKILLNLFMVAHASL---PRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST--IDSHDIQF 183 (215)
Q Consensus 109 ~~~~~~~~qvl~NLi~NA~~a~---~~gg~I~i~~~~~~~~~~i~V~D~G~Gi~~~e~~~~~~~~~~~~~--~~g~GlGl 183 (215)
..++..+.|++.||+.||++|+ +.+|.|+|++...++.+.+.|+|+|+||+ | ..++|.++++++ ..|+||||
T Consensus 34 ~~d~~~l~~vi~nli~NAi~h~~~~~~~g~I~i~~~~~~~~~~i~V~D~G~Gi~-~--~~~~f~~f~~~~~~~~G~GlGL 110 (145)
T 1th8_A 34 MDELTEIKTVVSEAVTNAIIHGYNNDPNGIVSISVIIEDGVVHLTVRDEGVGIP-D--IEEARQPLFTTKPELERSGMGF 110 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSTTCTTSEEEEEEEEETTEEEEEEEECSSCCS-C--HHHHTCCC-------CCCSCHH
T ss_pred HHHHHHHHHHHHHHHHHHHEEECCCCCCCEEEEEEEEECCEEEEEEECCCCCCC-C--HHCCCCCCCCCCCCCCCCCCHH
T ss_conf 789989999998863103025516899947999999817899999933767714-4--3204677740114789771049
Q ss_pred HHHHHHHHHCCCEEEEEEECCCCEEEEEEEEC
Q ss_conf 99999999709879999877992699999419
Q gi|254780891|r 184 YYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 (215)
Q Consensus 184 ~~~~~i~~~~gG~i~v~~~~~~g~~f~~~l~~ 215 (215)
|+++ +|+|+|+++|.+++|++|+++||.
T Consensus 111 ~ivk----~~~g~i~i~s~~g~Gt~f~i~lp~ 138 (145)
T 1th8_A 111 TIME----NFMDEVIVESEVNKGTTVYLKKHG 138 (145)
T ss_dssp HHHH----HHSSEEEEEEETTTEEEEEEEECC
T ss_pred HHHH----HHCCEEEEEECCCCCEEEEEEECC
T ss_conf 9999----859989999759994899999898