HHsearch alignment of GI: 254780891 and MMDB domain: 3fv5_A_

>3fv5_A (A:) DNA topoisomerase 4 subunit B; topoisomerase IV B subunit complex, antibiotic resistance, ATP-binding, nucleotide-binding; HET: DNA 1EU; 1.80A {Escherichia coli} PDB: 1s14_A*
Probab=96.16  E-value=0.037  Score=33.21  Aligned_cols=90  Identities=11%  Similarity=0.097  Sum_probs=56.5

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHH--CCCCCCCCCCCCCEEEEEEECCCCCCCH----------HH-HHHHHCCC---
Q ss_conf             00100012344456766468765320--0111112355772047999878984402----------45-88740545---
Q gi|254780891|r  108 KIDLSRERAKILLNLFMVAHASLPRG--GKVTISVQDSKNENIFSLKINGNLARFP----------EK-FTQIVDGN---  171 (215)
Q Consensus       108 ~~~~~~~~~qvl~NLi~NA~~a~~~g--g~I~i~~~~~~~~~~i~V~D~G~Gi~~~----------e~-~~~~~~~~---  171 (215)
                      ...-...+.+++.-++.||++..-.+  ..|.|....++.   ++|.|+|.||+..          |. +..+..+.   
T Consensus        11 myiGs~gl~~l~~Eii~NavDe~~~~~~~~i~v~~~~dg~---vsV~d~GrgiPv~~~~~~~~~~~E~v~t~l~ag~kfd   87 (201)
T 3fv5_A           11 MYTDTTRPNHLGQEVIDNSVDEALAGHAKRVDVILHADQS---LEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFS   87 (201)
T ss_dssp             GTSCTTSTHHHHHHHHHHHHHHHHTTCCSEEEEEECTTSC---EEEEECSSCCCCSBCTTCSSBHHHHHHHCC-------
T ss_pred             CEECCCCCCEEEEEEEECCHHHHHCCCCCEEEEEEECCCC---EEEEECCCCEEEEECCCCCCCEEEEEEEEEECCCCCC
T ss_conf             2689988770786888813548754898379999918980---9999978964685867789714599999970357678


Q ss_pred             ---CCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECC
Q ss_conf             ---457899872049999999997098799998779
Q gi|254780891|r  172 ---VESTIDSHDIQFYYVILLAHENKIRLLPEIIDD  204 (215)
Q Consensus       172 ---~~~~~~g~GlGl~~~~~i~~~~gG~i~v~~~~~  204 (215)
                         +....+.+|+|+.++..+.    -.+.|+...+
T Consensus        88 ~~~~~~sgG~~GvG~svvNalS----~~~~V~v~r~  119 (201)
T 3fv5_A           88 NKNYQFSGGLHGVGISVVNALS----KRVEVNVRRD  119 (201)
T ss_dssp             --------------CHHHHHTE----EEEEEEEEET
T ss_pred             CCCCCCCCCCCCCCCEEEEEEC----CCEEEEEECC
T ss_conf             8764113775760523447651----6169999418