Query gi|254780891|ref|YP_003065304.1| hypothetical protein CLIBASIA_03940 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 215
No_of_seqs 191 out of 11591
Neff 9.3
Searched_HMMs 33803
Date Wed Jun 1 22:19:39 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780891.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >3d36_A Sporulation kinase B; 100.0 4.4E-32 1.3E-36 223.2 14.4 205 11-215 8-224 (244)
2 >3a0y_A Sensor protein; ATP-LI 99.9 5.1E-26 1.5E-30 184.8 10.6 135 80-215 9-147 (152)
3 >1gkz_A [3-methyl-2-oxobutanoa 99.9 3.6E-25 1.1E-29 179.4 11.1 108 107-215 36-177 (193)
4 >1id0_A PHOQ histidine kinase; 99.9 4E-25 1.2E-29 179.0 11.3 106 107-215 37-144 (152)
5 >2c2a_A Sensor histidine kinas 99.9 3.4E-25 1E-29 179.5 10.8 134 81-215 11-158 (169)
6 >1r62_A Nitrogen regulation pr 99.9 2.3E-25 6.9E-30 180.6 9.4 132 81-214 12-157 (160)
7 >2btz_A Pyruvate dehydrogenase 99.9 1.6E-24 4.6E-29 175.3 12.6 107 108-215 55-179 (224)
8 >2e0a_A Pyruvate dehydrogenase 99.9 1.9E-24 5.7E-29 174.7 12.2 107 108-215 54-179 (185)
9 >1ysr_A Sensor-type histidine 99.9 8.4E-25 2.5E-29 177.0 10.1 109 105-215 37-148 (150)
10 >2q8g_A [pyruvate dehydrogenas 99.9 2.4E-24 7.2E-29 174.1 12.3 107 108-215 56-181 (187)
11 >1bxd_A ENVZ(290-450), protein 99.9 3.9E-25 1.2E-29 179.1 7.9 125 88-215 18-149 (161)
12 >3a0r_A Sensor protein; four h 99.9 4.1E-25 1.2E-29 179.0 7.3 128 86-215 7-139 (144)
13 >1y8o_A [pyruvate dehydrogenas 99.9 2.9E-24 8.7E-29 173.6 11.7 108 107-215 54-181 (187)
14 >2zbk_B Type 2 DNA topoisomera 99.9 2.2E-22 6.4E-27 161.7 9.7 104 110-214 27-143 (228)
15 >1mu5_A Type II DNA topoisomer 99.8 3.9E-21 1.1E-25 153.7 9.4 105 109-214 27-144 (229)
16 >1i58_A Chemotaxis protein CHE 99.8 9.4E-20 2.8E-24 145.0 8.9 137 77-214 5-187 (189)
17 >1b3q_A Protein (chemotaxis pr 99.8 2.4E-19 7.1E-24 142.4 10.5 133 82-215 7-185 (186)
18 >1th8_A Anti-sigma F factor; S 99.8 6.4E-19 1.9E-23 139.7 9.7 100 109-215 34-138 (145)
19 >3ehh_A Sensor kinase (YOCF pr 99.7 3.9E-17 1.2E-21 128.3 10.1 117 83-215 6-127 (130)
20 >2q2e_B Type 2 DNA topoisomera 99.7 3.4E-17 1E-21 128.7 9.1 103 110-213 3-119 (202)
21 >3ehg_A Sensor kinase (YOCF pr 99.5 5.6E-13 1.7E-17 101.9 11.2 113 87-215 8-125 (128)
22 >3a0r_A Sensor protein; four h 98.4 6.9E-07 2.1E-11 63.2 6.7 49 17-65 5-57 (65)
23 >2c2a_A Sensor histidine kinas 98.3 4.8E-06 1.4E-10 57.9 8.0 51 15-65 20-76 (89)
24 >1joy_A Protein (ENVZ_ecoli); 98.2 2.9E-06 8.7E-11 59.2 5.4 49 16-66 13-61 (67)
25 >1h7s_A PMS1 protein homolog 2 97.3 0.00051 1.5E-08 45.0 5.6 76 113-192 33-120 (234)
26 >3cwv_A DNA gyrase, B subunit, 97.2 0.0027 8E-08 40.4 8.4 86 112-205 28-120 (206)
27 >2cg9_A ATP-dependent molecula 97.2 0.00063 1.9E-08 44.4 5.1 74 118-192 5-108 (253)
28 >1ei1_A DNA gyrase B, GYRB; AT 97.1 0.0015 4.4E-08 42.0 6.2 86 113-205 33-137 (218)
29 >1y4s_A Chaperone protein HTPG 96.9 0.0031 9.1E-08 40.1 6.3 86 114-204 27-144 (235)
30 >1yc1_A HSP 86, heat shock pro 96.9 0.00094 2.8E-08 43.3 3.7 84 116-204 70-183 (264)
31 >2ior_A Chaperone protein HTPG 96.8 0.0019 5.7E-08 41.4 4.5 86 114-204 47-164 (235)
32 >3ied_A Heat shock protein; HS 96.7 0.0028 8.3E-08 40.3 4.8 84 117-205 93-200 (272)
33 >2ioq_A Chaperone protein HTPG 96.7 0.0034 9.9E-08 39.8 5.1 86 114-204 27-144 (235)
34 >1b63_A MUTL; DNA mismatch rep 96.6 0.0062 1.8E-07 38.1 6.3 74 114-191 24-109 (207)
35 >2wer_A ATP-dependent molecula 96.6 0.0036 1.1E-07 39.6 4.8 85 115-204 27-141 (220)
36 >1kij_A DNA gyrase subunit B; 96.5 0.021 6.1E-07 34.8 8.6 86 112-204 30-134 (217)
37 >3g7e_A DNA gyrase subunit B; 96.5 0.0065 1.9E-07 38.0 5.9 85 113-204 20-123 (203)
38 >2gqp_A Endoplasmin; GRP94, HS 96.5 0.0022 6.5E-08 41.0 3.4 86 116-205 34-153 (236)
39 >2o1u_A Endoplasmin; GRP94, HS 96.5 0.004 1.2E-07 39.3 4.5 87 114-205 45-166 (256)
40 >1uyl_A HSP 86, heat shock pro 96.3 0.003 8.8E-08 40.1 2.9 85 115-204 41-155 (236)
41 >1s16_A Topoisomerase IV subun 96.2 0.064 1.9E-06 31.7 9.6 92 106-204 23-133 (217)
42 >1qy5_A Endoplasmin; GRP94, NE 96.2 0.0049 1.4E-07 38.8 3.8 84 116-203 30-147 (269)
43 >3fv5_A DNA topoisomerase 4 su 96.2 0.037 1.1E-06 33.2 8.1 90 108-204 11-119 (201)
44 >1pvg_A DNA topoisomerase II; 96.1 0.017 5E-07 35.4 6.1 79 112-191 62-159 (271)
45 >1zxm_A TOPO IIA ATPase, DNA t 95.0 0.057 1.7E-06 32.0 5.4 95 112-211 50-164 (247)
46 >3g75_A DNA gyrase subunit B; 93.5 0.13 3.9E-06 29.7 4.8 80 112-204 18-99 (184)
47 >3lmm_A Uncharacterized protei 75.3 5.5 0.00016 19.4 5.2 92 116-215 138-247 (249)
48 >2r8q_A Class I phosphodiester 50.3 10 0.0003 17.7 2.2 26 9-34 4-42 (137)
49 >1a05_A IPMDH, IMDH, 3-isoprop 45.3 19 0.00058 15.9 3.9 14 118-131 166-179 (358)
50 >1xn7_A Hypothetical protein Y 32.4 31 0.00091 14.6 2.6 25 18-42 18-42 (78)
51 >1f0j_A PDE4B, phosphodiestera 25.6 25 0.00075 15.2 0.9 21 9-29 108-128 (245)
52 >2our_A CAMP and CAMP-inhibite 25.4 26 0.00076 15.1 0.9 21 22-42 52-72 (190)
53 >3g4g_A DPDE3, PDE43, CAMP-spe 25.1 26 0.00078 15.1 0.9 15 13-27 191-205 (324)
54 >2k02_A Ferrous iron transport 24.1 43 0.0013 13.7 2.6 25 18-42 18-42 (87)
55 >3itu_A CGMP-dependent 3',5'-c 23.9 29 0.00085 14.8 0.9 21 9-29 107-127 (238)
56 >1bw3_A Barwin, basic barley S 22.7 46 0.0014 13.5 2.3 38 131-168 62-103 (125)
57 >3dyn_A High affinity CGMP-spe 22.3 44 0.0013 13.7 1.6 24 6-29 97-120 (232)
58 >3ecm_A High affinity CAMP-spe 22.1 32 0.00096 14.5 0.9 23 21-43 45-67 (188)
59 >3ibj_A CGMP-dependent 3',5'-c 21.8 33 0.00098 14.4 0.9 20 22-41 68-87 (252)
60 >3hr1_A CAMP and CAMP-inhibite 21.5 34 0.001 14.4 0.9 23 21-43 17-39 (156)
61 >1zkl_A HCP1, TM22, high-affin 21.4 33 0.00099 14.4 0.8 21 9-29 108-128 (237)
62 >1taz_A Calcium/calmodulin-dep 20.6 36 0.0011 14.2 0.9 21 22-42 52-72 (233)
63 >1so2_A CGMP-inhibited 3',5'-c 20.4 37 0.0011 14.1 0.9 18 115-132 225-242 (288)
64 >1tbf_A CGMP-specific 3',5'-cy 20.0 38 0.0011 14.0 0.9 17 11-27 128-144 (257)
No 1
>>3d36_A Sporulation kinase B; GHKL ATPase, four helix bundle, class I two-component histidine kinase, phosphoprotein; HET: ADP; 2.03A {Geobacillus stearothermophilus} (A:)
Probab=100.00 E-value=4.4e-32 Score=223.25 Aligned_cols=205 Identities=13% Similarity=0.122 Sum_probs=152.1
Q ss_pred HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHCCCC----HHHHHHHHHHHHHHHHHHH----HHHCCCCCCCCCCCC
Q ss_conf 7687999--99774545422799999999999614430----1478988899999999863----110011223200000
Q gi|254780891|r 11 SMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIE----DEVMQLIRLSSMSAIIRLK----FMRLAFGYTGSVDSL 80 (215)
Q Consensus 11 ~~~laal--las~IaHdlrtPL~~I~~~~elL~~~~~~----~~~~~~i~~~~~~~~~l~~----~~r~~~~~~~~~~~~ 80 (215)
..+++++ +++.|||||||||++|.+++++|.+.... .+.++.|.+.++++..+++ +.+............
T Consensus 8 ~e~~~~~~~~~~~vsHelrtPL~~i~~~~~~l~~~~~~~~~~~~~l~~i~~~~~rl~~li~~ll~~~r~~~~~~~~~~~~ 87 (244)
T 3d36_A 8 AEKMEAVTHLAASISHEIRNPLTAARGFIQLIEEQPLAADKRRQYARIAIEELDRAEAIITDYLTFAKPAPETPEKLNVK 87 (244)
T ss_dssp ---------CCCCHHHHHHHHHHHHHHHHHHGGGCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCEEEEHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECHH
T ss_conf 99999999999998999868999999999999779998599999999999999999999999999855487897165399
Q ss_pred CCCCHHHHHHHHHHHC-CCCCCCCCCCCCC-CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCC
Q ss_conf 0000134444432201-2233211000000-1000123444567664687653200111112355772047999878984
Q gi|254780891|r 81 IGLGDIEQVIEDFIAV-DKRVQVSWTGEKI-DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA 158 (215)
Q Consensus 81 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~qvl~NLi~NA~~a~~~gg~I~i~~~~~~~~~~i~V~D~G~Gi 158 (215)
....++...+...... .....+....+.. ..+..+.+++.|++.||++|.+.++.+.+......+...+.+.|+|.|+
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~n~l~na~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (244)
T 3d36_A 88 LEIERVIDILRPLANMSCVDIQATLAPFSVIGEREKFRQCLLNVMKNAIEAMPNGGTLQVYVSIDNGRVLIRIADTGVGM 167 (244)
T ss_dssp HHHHHHHHHHHHHHTTTTEEEEEECCCCEEEECHHHHHHHHHHHHHHHHHTCTTCEEEEEEEEEETTEEEEEEEECSSCC
T ss_pred HHHHHHHHHHHHHHHHCCEEEEEECCCCEEEECHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCEEEEEEEECCCCC
T ss_conf 99999999999997526859996179856997699999999999988998676897389999960638999999758898
Q ss_pred CCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEEC
Q ss_conf 402458874054545789987204999999999709879999877992699999419
Q gi|254780891|r 159 RFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 (215)
Q Consensus 159 ~~~e~~~~~~~~~~~~~~~g~GlGl~~~~~i~~~~gG~i~v~~~~~~g~~f~~~l~~ 215 (215)
..++....||+++++++..|+|||||+|+.+++.|||+|+++|.+++|++|++.||+
T Consensus 168 ~~~~~~~~~~~~~~~~~~~GtGLGL~ivk~ive~hgG~i~v~s~~g~Gt~f~i~lP~ 224 (244)
T 3d36_A 168 TKEQLERLGEPYFTTKGVKGTGLGMMVVYRIIESMNGTIRIESEIHKGTTVSIYLPL 224 (244)
T ss_dssp CHHHHHHTTSTTCCSSGGGCCSCHHHHHHHHHHHTTCEEEEEEETTTEEEEEEEEEC
T ss_pred CHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCEEEEEEEEC
T ss_conf 989999865898658999998748999999999879989999659995699999878
No 2
>>3a0y_A Sensor protein; ATP-LID, kinase, phosphoprotein, transferase, two-component regulatory system; 1.57A {Thermotoga maritima} PDB: 3a0t_A* 3a0x_A 3a0w_A 3a0z_A (A:)
Probab=99.93 E-value=5.1e-26 Score=184.77 Aligned_cols=135 Identities=13% Similarity=0.063 Sum_probs=110.4
Q ss_pred CCCCCHHHHHHHHHHH-CCCCCCCCCCCC---CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECC
Q ss_conf 0000013444443220-122332110000---001000123444567664687653200111112355772047999878
Q gi|254780891|r 80 LIGLGDIEQVIEDFIA-VDKRVQVSWTGE---KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKING 155 (215)
Q Consensus 80 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---~~~~~~~~~qvl~NLi~NA~~a~~~gg~I~i~~~~~~~~~~i~V~D~G 155 (215)
...+.++...++.... .+.++.++.+.. ...++..+.|++.||+.||++|+++||+|+|+++..++.+.|+|+|+|
T Consensus 9 ~~~i~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~D~~~l~qvl~NLi~NAik~~~~g~~i~i~~~~~~~~~~i~v~D~G 88 (152)
T 3a0y_A 9 NELIREVYVLFEEKIRKMNIDFCFETDNEDLRVEADRTRIKQVLINLVQNAIEATGENGKIKITSEDMYTKVRVSVWNSG 88 (152)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEEEEEESCSSCEEEECHHHHHHHHHHHHHHHHHHHCTTCEEEEEEEECSSEEEEEEEEES
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEEEECHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCEEEEEEEECC
T ss_conf 99999999999999987797999982898879999799999999999999878648998899999976988999999657
Q ss_pred CCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEEC
Q ss_conf 984402458874054545789987204999999999709879999877992699999419
Q gi|254780891|r 156 NLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 (215)
Q Consensus 156 ~Gi~~~e~~~~~~~~~~~~~~~g~GlGl~~~~~i~~~~gG~i~v~~~~~~g~~f~~~l~~ 215 (215)
+||+ ++...++|+++++++..|+|||||+|+.+++.|+|.+.+.++.++|++|+++||+
T Consensus 89 ~GI~-~~~~~~iFe~f~~~~~~G~GLGL~i~~~iv~~~~g~~~~~~s~~~Gt~f~i~lP~ 147 (152)
T 3a0y_A 89 PPIP-EELKEKIFSPFFTTKTQGTGLGLSICRKIIEDEHGGKIWTENRENGVVFIFEIPK 147 (152)
T ss_dssp CCCC-GGGTTGGGSTTCCCC--CCCCSHHHHHHHHHTTTSCEEEEEEETTEEEEEEEEES
T ss_pred CCCC-HHHHHHHCCCCEECCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCEEEEEEECC
T ss_conf 9988-8999872799455898985867999999999848998999957996799999629
No 3
>>1gkz_A [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase; transferase, mitochondrial protein kinase, potassium; HET: ADP; 2.2A {Rattus norvegicus} (A:196-388)
Probab=99.92 E-value=3.6e-25 Score=179.37 Aligned_cols=108 Identities=11% Similarity=0.038 Sum_probs=96.7
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHH--------CCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHCCCCCCC---
Q ss_conf 000100012344456766468765320--------011111235577204799987898440245887405454578---
Q gi|254780891|r 107 EKIDLSRERAKILLNLFMVAHASLPRG--------GKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST--- 175 (215)
Q Consensus 107 ~~~~~~~~~~qvl~NLi~NA~~a~~~g--------g~I~i~~~~~~~~~~i~V~D~G~Gi~~~e~~~~~~~~~~~~~--- 175 (215)
....++..+.|++.||+.||++|++.+ +.|.+.....++.+.|.|+|+|+||+ ++..+++|+||++++
T Consensus 36 ~v~~D~~~L~qvl~NLl~NAik~~~~g~~~~~~~~~~i~~~~~~~~~~i~i~V~D~G~GI~-~e~~~~iF~~f~~~~~~~ 114 (193)
T 1gkz_A 36 RFPFIPMPLDYILPELLKNAMRATMESHLDTPYNVPDVVITIANNDVDLIIRISDRGGGIA-HKDLDRVMDYHFTTAEAS 114 (193)
T ss_dssp CEEECCHHHHHHHHHHHHHHHHHHHHTCTTCTTSCCCEEEEEEECSSEEEEEEECCSCCCC-TTTTTTTTSTTCCCC---
T ss_pred EEEECHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCEEEEEEECCCCEEEEEEEECCCCCC-HHHHHHHCCCCEECCCCC
T ss_conf 5998799999999999999999856697575412550799873489889999973889939-899987727874356645
Q ss_pred -----------------------CCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEEC
Q ss_conf -----------------------9987204999999999709879999877992699999419
Q gi|254780891|r 176 -----------------------IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 (215)
Q Consensus 176 -----------------------~~g~GlGl~~~~~i~~~~gG~i~v~~~~~~g~~f~~~l~~ 215 (215)
..|+||||++|+.+++.|||+|+++|.+|+|++|++.||+
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~GtGLGL~i~k~ive~~gG~i~v~S~~g~Gt~f~i~lP~ 177 (193)
T 1gkz_A 115 TQDPRISPLFGHLDMHSGGQSGPMHGFGFGLPTSRAYAEYLGGSLQLQSLQGIGTDVYLRLRH 177 (193)
T ss_dssp ----------------------CCSCSSCHHHHHHHHHHHTTCEEEEEEETTTEEEEEEEEEC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHCCCEEEEEECCCCCEEEEEEECC
T ss_conf 554433222222112344456888965230999999999879979999669984499999889
No 4
>>1id0_A PHOQ histidine kinase; PHOQ/PHOP, signal transduction, transferase; HET: ANP; 1.60A {Escherichia coli} (A:)
Probab=99.92 E-value=4e-25 Score=179.05 Aligned_cols=106 Identities=8% Similarity=0.014 Sum_probs=94.7
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHCCCCCC--CCCCCCHHHH
Q ss_conf 00010001234445676646876532001111123557720479998789844024588740545457--8998720499
Q gi|254780891|r 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVES--TIDSHDIQFY 184 (215)
Q Consensus 107 ~~~~~~~~~~qvl~NLi~NA~~a~~~gg~I~i~~~~~~~~~~i~V~D~G~Gi~~~e~~~~~~~~~~~~--~~~g~GlGl~ 184 (215)
....++..+.|++.||+.||++|++.+ |.|+++..++.+.|+|+|+|+||+ ++...++|++|+.. ...|+|||||
T Consensus 37 ~i~~d~~~l~~vl~NLl~NAiky~~~~--i~i~~~~~~~~~~i~V~D~G~GI~-~~~~~~iF~~F~r~~~~~~G~GLGL~ 113 (152)
T 1id0_A 37 SFVGEQNDFVEVMGNVLDNACKYCLEF--VEISARQTDEHLYIVVEDDGPGIP-LSKREVIFDRGQRVDTLRPGQGVGLA 113 (152)
T ss_dssp EEESCHHHHHHHHHHHHHHHHHHCSSE--EEEEEEECSSCEEEEEEESSSCCC-GGGTTGGGSCCCCTTCCCTTCCSCHH
T ss_pred EEEECHHHHHHHHHHHHHHHHHHCCCC--EEEEEEEECCEEEEEEEECCCCCC-HHHHHHHCCCCCCCCCCCCCCCHHHH
T ss_conf 899889999999999999999976999--899999979999999998999979-89999865897258999897227999
Q ss_pred HHHHHHHHCCCEEEEEEECCCCEEEEEEEEC
Q ss_conf 9999999709879999877992699999419
Q gi|254780891|r 185 YVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 (215)
Q Consensus 185 ~~~~i~~~~gG~i~v~~~~~~g~~f~~~l~~ 215 (215)
+|+.+++.|||+|++++.+++|++|+++||+
T Consensus 114 i~k~iv~~hgG~I~~~s~~~~Gt~f~i~lP~ 144 (152)
T 1id0_A 114 VAREITEQYEGKIVAGESMLGGARMEVIFGR 144 (152)
T ss_dssp HHHHHHHHTTCEEEEEECTTSSEEEEEEECC
T ss_pred HHHHHHHHCCCEEEEEECCCCEEEEEEEEEC
T ss_conf 9999999869989999759985799999848
No 5
>>2c2a_A Sensor histidine kinase; phosphotransfer, PHOQ, selenomethionyl MAD, two-component systems, transferase; HET: ADP; 1.9A {Thermotoga maritima} (A:90-258)
Probab=99.92 E-value=3.4e-25 Score=179.51 Aligned_cols=134 Identities=10% Similarity=0.024 Sum_probs=105.6
Q ss_pred CCCCHHHHHHHHHHH-CCCCCCCCCCCC----CCCCCHHHHHHHHHHHHHHHHHHHHHC---CCCCCCCCCCCCEEEEEE
Q ss_conf 000013444443220-122332110000----001000123444567664687653200---111112355772047999
Q gi|254780891|r 81 IGLGDIEQVIEDFIA-VDKRVQVSWTGE----KIDLSRERAKILLNLFMVAHASLPRGG---KVTISVQDSKNENIFSLK 152 (215)
Q Consensus 81 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~----~~~~~~~~~qvl~NLi~NA~~a~~~gg---~I~i~~~~~~~~~~i~V~ 152 (215)
..+.++......... +..++.+..+.+ ...++..+.|+|.||+.||++|++.++ .|.+.+...++.++|+|+
T Consensus 11 ~li~~~~~~~~~~~~~~~i~i~~~~~~~~~~~v~~D~~~l~qvl~NLi~NAik~t~~~~~~~~i~i~~~~~~~~~~i~V~ 90 (169)
T 2c2a_A 11 DLVESAVNAIKEFASSHNVNVLFESNVPCPVEAYIDPTRIRQVLLNLLNNGVKYSKKDAPDKYVKVILDEKDGGVLIIVE 90 (169)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEEESSCSCCEEEECHHHHHHHHHHHHHHHHHTCCTTCTTCEEEEEEEEETTEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEECCCCCEEEEEECHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCEEEEEEE
T ss_conf 99999999999999866973699317873379997579988889999998988532799704889998506998999999
Q ss_pred ECCCCCCCHHHHHHHHCCCCC------CCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEEC
Q ss_conf 878984402458874054545------789987204999999999709879999877992699999419
Q gi|254780891|r 153 INGNLARFPEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 (215)
Q Consensus 153 D~G~Gi~~~e~~~~~~~~~~~------~~~~g~GlGl~~~~~i~~~~gG~i~v~~~~~~g~~f~~~l~~ 215 (215)
|+|+||+ ++...++|++++. ++..|+|||||+|+++++.|||+|+++|.+++|++|+++||+
T Consensus 91 D~G~Gi~-~e~~~~lf~~f~~~~~~~~~~~~g~GLGL~i~~~iv~~hgG~i~~~s~~g~Gt~f~i~lP~ 158 (169)
T 2c2a_A 91 DNGIGIP-DHAKDRIFEQFYRVDSSLTYEVPGTGLGLAITKEIVELHGGRIWVESEVGKGSRFFVWIPK 158 (169)
T ss_dssp ECSSCCC-GGGTTGGGSTTCCCC---------CCCTHHHHHHHHHHTTCEEEEEEETTTEEEEEEEEEC
T ss_pred ECCCCCC-HHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCEEEEEEEEEC
T ss_conf 7899869-8999986688760788888899940379999999999859979999569980599999728
No 6
>>1r62_A Nitrogen regulation protein NR(II); PII, histidine kinase, two component system, transferase; 1.60A {Escherichia coli K12} (A:)
Probab=99.92 E-value=2.3e-25 Score=180.55 Aligned_cols=132 Identities=12% Similarity=0.104 Sum_probs=103.5
Q ss_pred CCCCHHHHHHHHHHHCCCCCCCCCCCCC---CCCCHHHHHHHHHHHHHHHHHH-HHHCCCCCCCC----------CCCCC
Q ss_conf 0000134444432201223321100000---0100012344456766468765-32001111123----------55772
Q gi|254780891|r 81 IGLGDIEQVIEDFIAVDKRVQVSWTGEK---IDLSRERAKILLNLFMVAHASL-PRGGKVTISVQ----------DSKNE 146 (215)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~qvl~NLi~NA~~a~-~~gg~I~i~~~----------~~~~~ 146 (215)
....++...+......+..+........ ..++..+.|++.||+.||++|+ +.++.+.+... ..++.
T Consensus 12 ~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~d~~~l~qvl~NLl~NAik~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 91 (160)
T 1r62_A 12 KVAERVVTLVSMELPDNVRLIRDYDPSLPELAHDPDQIEQVLLNIVRNALQALGPEGGEIILRTRTAFQLTLHGERYRLA 91 (160)
T ss_dssp HHHHHHHHHHTTTCCTTEEEEEECCTTCCCEEECHHHHHHHHHHHHHHHHHHHGGGCEEEEEEEEEEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHHHCCCCCEEEEECCCCCCEEEECHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCEECCCCCCCCE
T ss_conf 99999999999875699899998299997799889999999999999999853478953788752033100023356857
Q ss_pred EEEEEEECCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEE
Q ss_conf 04799987898440245887405454578998720499999999970987999987799269999941
Q gi|254780891|r 147 NIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 (215)
Q Consensus 147 ~~i~V~D~G~Gi~~~e~~~~~~~~~~~~~~~g~GlGl~~~~~i~~~~gG~i~v~~~~~~g~~f~~~l~ 214 (215)
+.|+|+|+|+||+ ++..+++|+||++++.+|+|||||+|+.+++.|||+|+++|.++ |++|++.||
T Consensus 92 v~i~V~D~G~GI~-~~~~~~iFe~F~ttk~~GtGLGL~i~~~iv~~~~G~i~v~s~~~-Gt~f~i~lP 157 (160)
T 1r62_A 92 ARIDVEDNGPGIP-PHLQDTLFYPMVSGREGGTGLGLSIARNLIDQHSGKIEFTSWPG-HTEFSVYLP 157 (160)
T ss_dssp EEEEEEEECTTC---------------------CHHHHHHHHHHHHTTCEEEEEEETT-EEEEEEEEE
T ss_pred EEEEECCCCCCCC-HHHHHHHCCCCEECCCCCCCCCHHHHHHHHHHCCCEEEEEEECC-CEEEEEEEE
T ss_conf 9999868999879-89999738880436899898419999999998699899999499-789999999
No 7
>>2btz_A Pyruvate dehydrogenase kinase isoenzyme 2; GHKL motif regulation, transferase; 2.2A {Homo sapiens} PDB: 2bu2_A* 2bu5_A* 2bu6_A* 2bu7_A* 2bu8_A* 3crk_A* 1jm6_A* 3crl_A* (A:171-394)
Probab=99.92 E-value=1.6e-24 Score=175.31 Aligned_cols=107 Identities=10% Similarity=0.049 Sum_probs=95.7
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHCC-------CCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHCCCCCCC-----
Q ss_conf 0010001234445676646876532001-------1111235577204799987898440245887405454578-----
Q gi|254780891|r 108 KIDLSRERAKILLNLFMVAHASLPRGGK-------VTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST----- 175 (215)
Q Consensus 108 ~~~~~~~~~qvl~NLi~NA~~a~~~gg~-------I~i~~~~~~~~~~i~V~D~G~Gi~~~e~~~~~~~~~~~~~----- 175 (215)
...++..+.|++.||+.||++|++.+|. |.+.....++.+.|.|+|+|+||+ ++...++|++|+..+
T Consensus 55 v~~d~~~l~qvl~NLl~NAik~t~~~g~~~~~~~~i~v~~~~~~~~~~i~V~D~G~GI~-~e~~~~iFe~F~~~~~~~~~ 133 (224)
T 2btz_A 55 MVYVPSHLYHMLFELFKNAMRATVESHESSLILPPIKVMVALGEEDLSIKMSDRGGGVP-LRKIERLFSYMYSTAPTPQP 133 (224)
T ss_dssp EEECHHHHHHHHHHHHHHHHHHHHHTTTTCSCCCCEEEEEEECSSEEEEEEEECSCCCC-HHHHHHHTCTTTTCCC----
T ss_pred EEECHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCEEEEEEEECCCCCC-HHHHHHHCCCCEECCCCCCC
T ss_conf 99759999999999999999998723577888870799996289889999988899989-89999862877347877777
Q ss_pred ------CCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEEC
Q ss_conf ------9987204999999999709879999877992699999419
Q gi|254780891|r 176 ------IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 (215)
Q Consensus 176 ------~~g~GlGl~~~~~i~~~~gG~i~v~~~~~~g~~f~~~l~~ 215 (215)
..|+|||||+|+.+++.|||+|+++|.+|+|++|++.||.
T Consensus 134 ~~~~~~~~G~GLGL~ivk~ive~hgG~i~v~S~~g~Gt~f~i~LP~ 179 (224)
T 2btz_A 134 GTGGTPLAGFGYGLPISRLYAKYFQGDLQLFSMEGFGTDAVIYLKA 179 (224)
T ss_dssp ----------CCHHHHHHHHHHHTTCEEEEEEETTTEEEEEEEEES
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCEEEEEEECC
T ss_conf 7788897984243999999999869989999508973599999718
No 8
>>2e0a_A Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP-binding, structural genomics, NPPSFA; HET: ANP; 1.86A {Homo sapiens} PDB: 2zdx_A* 2zdy_A* 2zkj_A* 3d2r_A* (A:171-355)
Probab=99.92 E-value=1.9e-24 Score=174.71 Aligned_cols=107 Identities=10% Similarity=0.005 Sum_probs=96.3
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHH-------CCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHCCCCCCCC----
Q ss_conf 00100012344456766468765320-------0111112355772047999878984402458874054545789----
Q gi|254780891|r 108 KIDLSRERAKILLNLFMVAHASLPRG-------GKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI---- 176 (215)
Q Consensus 108 ~~~~~~~~~qvl~NLi~NA~~a~~~g-------g~I~i~~~~~~~~~~i~V~D~G~Gi~~~e~~~~~~~~~~~~~~---- 176 (215)
...++..+.|++.||+.||++|++++ +.|++.+...+..+.|+|+|+|+||+ ++...++|++|++.+.
T Consensus 54 v~~d~~~l~qvl~NLi~NAik~~~~~~~~~~~~~~i~i~~~~~~~~v~i~V~D~G~Gi~-~e~~~~lfe~F~~~~~~~~~ 132 (185)
T 2e0a_A 54 IVYVPSHLHHMLFELFKNAMRATVEHQENQPSLTPIEVIVVLGKEDLTIKISDRGGGVP-LRIIDRLFSYTYSTAPTPVM 132 (185)
T ss_dssp EEECHHHHHHHHHHHHHHHHHHHHHHTTTSSSCCCEEEEEEECSSEEEEEEEECSCCCC-GGGHHHHTSTTCCSSCCC--
T ss_pred EEECHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCEEEEEEEECCCCCC-HHHHHHHCCCCCCCCCCCCC
T ss_conf 99779999999999999999999854778898863899996279989999995799889-89999770544427775555
Q ss_pred --------CCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEEC
Q ss_conf --------987204999999999709879999877992699999419
Q gi|254780891|r 177 --------DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 (215)
Q Consensus 177 --------~g~GlGl~~~~~i~~~~gG~i~v~~~~~~g~~f~~~l~~ 215 (215)
.|+|||||+|+.+++.|||+|+++|.+++|++|+++||+
T Consensus 133 ~~~~~~~~~G~GLGL~ivk~ive~~gG~i~v~S~~~~Gt~f~i~lP~ 179 (185)
T 2e0a_A 133 DNSRNAPLAGFGYGLPISRLYAKYFQGDLNLYSLSGYGTDAIIYLKA 179 (185)
T ss_dssp ----CCCSSCSSCHHHHHHHHHHHTTCEEEEEEETTTEEEEEEEEES
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEEC
T ss_conf 65556898841168999999999869989999618974599999728
No 9
>>1ysr_A Sensor-type histidine kinase PRRB; ATP-binding domain, structural genomics, mycobacterium tuberculosis structural proteomics project; 1.78A {Mycobacterium tuberculosis} (A:)
Probab=99.92 E-value=8.4e-25 Score=177.03 Aligned_cols=109 Identities=13% Similarity=-0.051 Sum_probs=97.8
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHCCCCC---CCCCCCCH
Q ss_conf 000001000123444567664687653200111112355772047999878984402458874054545---78998720
Q gi|254780891|r 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE---STIDSHDI 181 (215)
Q Consensus 105 ~~~~~~~~~~~~qvl~NLi~NA~~a~~~gg~I~i~~~~~~~~~~i~V~D~G~Gi~~~e~~~~~~~~~~~---~~~~g~Gl 181 (215)
......++..+.|++.||+.||++|++ ++.|.|++..+++.+.|.|+|+|+||+ ++..+++|++|+. .+..|+||
T Consensus 37 ~~~v~~d~~~l~~il~NLl~NAik~~~-~~~I~i~~~~~~~~i~i~V~D~G~Gi~-~e~~~~iFe~F~r~~~~~~~G~GL 114 (150)
T 1ysr_A 37 TCIIVGLPAGLRLAVDNAIANAVKHGG-ATLVQLSAVSSRAGVEIAIDDNGSGVP-EGERQVVFERFSRGSTASHSGSGL 114 (150)
T ss_dssp CCEEEECHHHHHHHHHHHHHHHHHTTC-CSEEEEEEEEETTEEEEEEEESSSCCC-GGGHHHHHTSCC-----------C
T ss_pred CCEEEECHHHHHHHHHHHHHHHHHHCC-CCEEEEEEEECCCEEEEEEEECCCCCC-HHHHHHHCCCCCCCCCCCCCCCCH
T ss_conf 967998899999999999999998579-948999998249989999998587879-899998626321589999896077
Q ss_pred HHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEEC
Q ss_conf 4999999999709879999877992699999419
Q gi|254780891|r 182 QFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 (215)
Q Consensus 182 Gl~~~~~i~~~~gG~i~v~~~~~~g~~f~~~l~~ 215 (215)
||++|+.+++.|||+|++++.+++|++|+++||.
T Consensus 115 GL~i~k~i~~~hgG~i~v~s~~~~Gt~f~i~lP~ 148 (150)
T 1ysr_A 115 GLALVAQQAQLHGGTASLENSPLGGARLVLRLPG 148 (150)
T ss_dssp CCHHHHHHHHHTTCEEEEEECTTSSEEEEEEEEC
T ss_pred HHHHHHHHHHHCCCEEEEEECCCCEEEEEEEEEC
T ss_conf 9999999999859989999669981699999984
No 10
>>2q8g_A [pyruvate dehydrogenase [lipoamide]] kinase isozyme 1; GHKL ATPase/kinase family, pyruvate dehydrogenase complex, mitochondrial kinase; HET: AZX; 1.90A {Homo sapiens} PDB: 2q8f_A* 2q8h_A (A:182-368)
Probab=99.92 E-value=2.4e-24 Score=174.09 Aligned_cols=107 Identities=8% Similarity=0.015 Sum_probs=95.9
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHH-------CCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHCCCCCCCC----
Q ss_conf 00100012344456766468765320-------0111112355772047999878984402458874054545789----
Q gi|254780891|r 108 KIDLSRERAKILLNLFMVAHASLPRG-------GKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI---- 176 (215)
Q Consensus 108 ~~~~~~~~~qvl~NLi~NA~~a~~~g-------g~I~i~~~~~~~~~~i~V~D~G~Gi~~~e~~~~~~~~~~~~~~---- 176 (215)
...++..+.|+|.||+.||++|++.+ +.|+|.+...++++.|+|.|+|+||+ ++...++|++|++++.
T Consensus 56 i~~d~~~l~qvl~NLi~NAi~~t~~~~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~GI~-~e~~~~iF~~F~~~~~~~~~ 134 (187)
T 2q8g_A 56 VVYVPSHLYHMVFELFKNAMRATMEHHANRGVYPPIQVHVTLGNEDLTVKMSDRGGGVP-LRKIDRLFNYMYSTAPRPRV 134 (187)
T ss_dssp EEECHHHHHHHHHHHHHHHHHHHHHHSTTTCCCCCEEEEEEECSSEEEEEEEECSCCCC-HHHHGGGGCTTTTCCCCCCS
T ss_pred EEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCEEEEEEEECCCCCC-HHHHHHHHCCCCCCCCCCCC
T ss_conf 99739999999999999999998874666899971899998579689999987899989-89999884500507776665
Q ss_pred --------CCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEEC
Q ss_conf --------987204999999999709879999877992699999419
Q gi|254780891|r 177 --------DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 (215)
Q Consensus 177 --------~g~GlGl~~~~~i~~~~gG~i~v~~~~~~g~~f~~~l~~ 215 (215)
.|+|||||+|+.+++.|||+|+++|.+++|++|+++||+
T Consensus 135 ~~~~~~~~~g~GlGL~i~k~iv~~hgG~I~v~S~~~~Gt~f~i~lP~ 181 (187)
T 2q8g_A 135 ETSRAVPLAGFGYGLPISRLYAQYFQGDLKLYSLEGYGTDAVIYIKA 181 (187)
T ss_dssp SCCSCCCSSCTTCHHHHHHHHHHHTTCEEEEEEETTTEEEEEEEEES
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEEC
T ss_conf 55445666787772999999999849979999537975499999708
No 11
>>1bxd_A ENVZ(290-450), protein (osmolarity sensor protein (ENVZ)); histidine kinase, osmosensor, His-Asp phosphorelay system, signal transduction; HET: ANP; NMR {Escherichia coli} (A:)
Probab=99.92 E-value=3.9e-25 Score=179.13 Aligned_cols=125 Identities=14% Similarity=0.116 Sum_probs=103.5
Q ss_pred HHHHHHHHCCCCCCCCCCCC---CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCHHHH
Q ss_conf 44443220122332110000---001000123444567664687653200111112355772047999878984402458
Q gi|254780891|r 88 QVIEDFIAVDKRVQVSWTGE---KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164 (215)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~qvl~NLi~NA~~a~~~gg~I~i~~~~~~~~~~i~V~D~G~Gi~~~e~~ 164 (215)
+++..+.....++.+....+ ...++..+.|+|.||+.||++|+ +|.|.|++..+++.+.|.|+|+|+||+ ++..
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~v~~D~~~l~~vl~NLi~NAiky~--~~~i~i~~~~~~~~~~i~V~D~G~GI~-~e~~ 94 (161)
T 1bxd_A 18 EVIAAESGYEREIETALYPGSIEVKMHPLSIKRAVANMVVNAARYG--NGWIKVSSGTEPNRAWFQVEDDGPGIA-PEQR 94 (161)
T ss_dssp HHHHHHCSSSCCEEEECCSSCCCEEECHHHHHHHHHHHHHHHHTTC--CSCEEEEEEEETTEEEEEEEEESSCSC-TTGG
T ss_pred HHHHHHHCCCCCEEEEECCCCEEEEECHHHHHHHHHHHHHHHHHHC--CCEEEEEEEEECCEEEEEEEECCCCCC-HHHH
T ss_conf 9999741112857999569985899889999999999999999866--983999998627989999998377789-9999
Q ss_pred HHHHCCCCCCC----CCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEEC
Q ss_conf 87405454578----9987204999999999709879999877992699999419
Q gi|254780891|r 165 TQIVDGNVEST----IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 (215)
Q Consensus 165 ~~~~~~~~~~~----~~g~GlGl~~~~~i~~~~gG~i~v~~~~~~g~~f~~~l~~ 215 (215)
.++|++|+..+ ..|+|||||+|+.|++.|||+|+++|.+++|++|+++||.
T Consensus 95 ~~iF~~F~r~~~~~~~~G~GlGL~i~~~iv~~hgG~I~v~s~~~~Gt~f~i~lPl 149 (161)
T 1bxd_A 95 KHLFQPFVRGDSARTISGTGLGLAIVQRIVDNHNGMLELGTSERGGLSIRAWLPV 149 (161)
T ss_dssp GCSSCCCCCCSCCCCCCCCSCCCCTTHHHHHHHTSEEEEEEETTTEEEEEEEECC
T ss_pred HHHHCCCEECCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCEEEEEEEEE
T ss_conf 9875783488788868966707999999999879989999749992799999983
No 12
>>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transferase, two-component regulatory system; 3.80A {Thermotoga maritima} (A:206-349)
Probab=99.91 E-value=4.1e-25 Score=178.98 Aligned_cols=128 Identities=14% Similarity=0.104 Sum_probs=103.9
Q ss_pred HHHHHHHHHH-CCCCCCCCCCCC---CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCH
Q ss_conf 3444443220-122332110000---001000123444567664687653200111112355772047999878984402
Q gi|254780891|r 86 IEQVIEDFIA-VDKRVQVSWTGE---KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161 (215)
Q Consensus 86 ~~~~~~~~~~-~~~~~~~~~~~~---~~~~~~~~~qvl~NLi~NA~~a~~~gg~I~i~~~~~~~~~~i~V~D~G~Gi~~~ 161 (215)
+...+..... +...+.++.+.. ...++..+.|++.||+.||++|++++|+|.|++..+++.+.|+|+|+|+||+ +
T Consensus 7 ~~~~~~~~~~~~~i~~~~~~~~~~~~i~~d~~~l~~vl~NLi~NAik~~~~~g~I~i~~~~~~~~~~i~V~D~G~Gi~-~ 85 (144)
T 3a0r_A 7 VYVLFEEKIRKMNIDFCFETDNEDLRVEADRTRIKQVLINLVQNAIEATGENGKIKITSEDMYTKVRVSVWNSGPPIP-E 85 (144)
T ss_dssp HHHHHHHHHTTTTCCCEEEESCSCCEEEECHHHHHHHHHHHHTHHHHTTCTTCCEEEEEEEETTEEEEEEEEESCCCC-G
T ss_pred HHHHHHHHHHHCCCEEEEECCCCCEEEEECHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCEEEEEEEECCCCCC-H
T ss_conf 999879999864948997237875389952067887899999999983405762699997046489999997899979-8
Q ss_pred HHHHHHHCCCCCCCCCCCCHHHHHHHHHHHH-CCCEEEEEEECCCCEEEEEEEEC
Q ss_conf 4588740545457899872049999999997-09879999877992699999419
Q gi|254780891|r 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHE-NKIRLLPEIIDDHNVVLSALLEK 215 (215)
Q Consensus 162 e~~~~~~~~~~~~~~~g~GlGl~~~~~i~~~-~gG~i~v~~~~~~g~~f~~~l~~ 215 (215)
+...++|+||++++..|+|||||+|+++++. |||.+.+ +.+++|++|+++||+
T Consensus 86 ~~~~~lF~~f~~~k~~G~GLGL~i~~~iv~~~~Gg~~~~-~s~~~Gt~f~i~lP~ 139 (144)
T 3a0r_A 86 ELKEKIFSPFFTTKTQGTGLGLSICRKIIEDEHGGKIWT-ENRENGVVFIFEIPK 139 (144)
T ss_dssp GGGTTTSSSCCCC------CCCTHHHHHHHHTTCSBCCE-EECSSEEEEEEEEES
T ss_pred HHHHHHCCCCEECCCCCCCHHHHHHHHHHHHCCCCEEEE-EECCCCEEEEEEECC
T ss_conf 999870699502899970646999999999808998999-966996899999469
No 13
>>1y8o_A [pyruvate dehydrogenase [lipoamide]] kinase isozyme 3; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: LPA ADP; 2.48A {Homo sapiens} (A:193-379)
Probab=99.91 E-value=2.9e-24 Score=173.57 Aligned_cols=108 Identities=11% Similarity=-0.009 Sum_probs=96.6
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHC--------CCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHCCCCCCCC--
Q ss_conf 0001000123444567664687653200--------111112355772047999878984402458874054545789--
Q gi|254780891|r 107 EKIDLSRERAKILLNLFMVAHASLPRGG--------KVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI-- 176 (215)
Q Consensus 107 ~~~~~~~~~~qvl~NLi~NA~~a~~~gg--------~I~i~~~~~~~~~~i~V~D~G~Gi~~~e~~~~~~~~~~~~~~-- 176 (215)
.....+..+.|++.||+.||++|++.++ .|.+++...++.++|+|+|+|+||+ ++..+++|++|+.++.
T Consensus 54 ~v~~d~~~l~~vl~nLl~NAi~~~~~~~~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~GI~-~e~~~~iFe~F~r~~~~~ 132 (187)
T 1y8o_A 54 QVVYVPSHLFHMLFELFKNSMRATVELYEDRKEGYPAVKTLVTLGKEDLSIKISDLGGGVP-LRKIDRLFNYMYSTAPRP 132 (187)
T ss_dssp EEEECHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCCCEEEEEEECSSEEEEEEEECSCCCC-HHHHGGGGCTTTC-----
T ss_pred EEEECHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCEEEEEEEECCCCCC-HHHHHHHCCCCCCCCCCC
T ss_conf 9996599999999999997999988640446788871799998469689999987999989-999987717455268866
Q ss_pred ----------CCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEEC
Q ss_conf ----------987204999999999709879999877992699999419
Q gi|254780891|r 177 ----------DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 (215)
Q Consensus 177 ----------~g~GlGl~~~~~i~~~~gG~i~v~~~~~~g~~f~~~l~~ 215 (215)
.|+|||||+|+.|++.|||+|+++|.+++|++|+++||+
T Consensus 133 ~~~~s~~~~~~G~GLGLai~k~iv~~h~G~i~v~S~~~~Gt~f~i~lP~ 181 (187)
T 1y8o_A 133 SLEPTRAAPLAGFGYGLPISRLYARYFQGDLKLYSMEGVGTDAVIYLKA 181 (187)
T ss_dssp --------CC--CTTHHHHHHHHHHHTTCEEEEEEETTTEEEEEEEEES
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEEC
T ss_conf 6454445677888865999999999839989999608976699999718
No 14
>>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae} (B:1-228)
Probab=99.88 E-value=2.2e-22 Score=161.72 Aligned_cols=104 Identities=10% Similarity=0.005 Sum_probs=89.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC------CCCCCCEEEEEEECCCCCCCHHHHHHHHCCCCCCC-------C
Q ss_conf 1000123444567664687653200111112------35577204799987898440245887405454578-------9
Q gi|254780891|r 110 DLSRERAKILLNLFMVAHASLPRGGKVTISV------QDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST-------I 176 (215)
Q Consensus 110 ~~~~~~~qvl~NLi~NA~~a~~~gg~I~i~~------~~~~~~~~i~V~D~G~Gi~~~e~~~~~~~~~~~~~-------~ 176 (215)
.++.++.|++.||+.||+||++.|+.+.+.. ...+..++|.|+|+|+||+ ++..+++|+||+..+ .
T Consensus 27 ~D~~rl~qil~NLl~NAiK~t~~g~~~~~~~~~~~~~~~~~~~~~i~V~DtG~GI~-~e~~~~iF~pF~~~~~~~~~~~~ 105 (228)
T 2zbk_B 27 NPARALYQTVRELIENSLDATDVHGILPNIKITIDLIDDARQIYKVNVVDNGIGIP-PQEVPNAFGRVLYSSKYVNRQTR 105 (228)
T ss_dssp SHHHHHHHHHHHHHHHHHTTTTTTTCCCCCEEEEEEEETTTTEEEEEEECCSCCCC-GGGSHHHHTSCCCSCCCCCSCCS
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCEEEEEEEEECCCCC-HHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 74026999999999988977872588884389999953899768999997089999-99999986444257774430117
Q ss_pred CCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEE
Q ss_conf 98720499999999970987999987799269999941
Q gi|254780891|r 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 (215)
Q Consensus 177 ~g~GlGl~~~~~i~~~~gG~i~v~~~~~~g~~f~~~l~ 214 (215)
.|+||||++|+.+++.|||.|.++|++++|++|++.+|
T Consensus 106 ~GtGLGL~i~~~lv~~~~G~i~~~s~~~~~~~~~~~~~ 143 (228)
T 2zbk_B 106 GMYGLGVKAAVLYSQMHQDKPIEIETSPVNSKRIYTFK 143 (228)
T ss_dssp CSSSSHHHHHHHHHHHHCCCCEEEEEECTTCSEEEEEE
T ss_pred CCCCCCHHHHHHHHHHCCCCEEEEEEECCCCCEEEEEE
T ss_conf 87763476899999981698599999727997179996
No 15
>>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} (A:1-229)
Probab=99.85 E-value=3.9e-21 Score=153.75 Aligned_cols=105 Identities=10% Similarity=-0.009 Sum_probs=89.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC------CCCCCCEEEEEEECCCCCCCHHHHHHHHCCCCCC-----C--
Q ss_conf 01000123444567664687653200111112------3557720479998789844024588740545457-----8--
Q gi|254780891|r 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISV------QDSKNENIFSLKINGNLARFPEKFTQIVDGNVES-----T-- 175 (215)
Q Consensus 109 ~~~~~~~~qvl~NLi~NA~~a~~~gg~I~i~~------~~~~~~~~i~V~D~G~Gi~~~e~~~~~~~~~~~~-----~-- 175 (215)
..++.++.|++.||+.||+||++.||.+.+.. ...+..+.|+|+|+|+||+ ++...++|++|+.. +
T Consensus 27 ~~D~~rl~qIl~NLl~NAiKft~~g~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~-~e~~~~iF~~f~~~~~~~~~~~ 105 (229)
T 1mu5_A 27 PNPARALYQTVRELIENSLDATDVHGILPNIKITIDLIDDARQIYKVNVVDNGIGIP-PQEVPNAFGRVLYSSKYVNRQT 105 (229)
T ss_dssp SSHHHHHHHHHHHHHHHHHHTTGGGTCCCEEEEEEEEEETTTTEEEEEEECCSCCCC-GGGHHHHHHCCCCC-CCCCSCC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCEEEEEEEECCCCCC-HHHHHHHHHHHCCCCCCCCCCC
T ss_conf 870118999999999999975775598771699999804899679999997589989-8999999876640676564135
Q ss_pred CCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEE
Q ss_conf 998720499999999970987999987799269999941
Q gi|254780891|r 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 (215)
Q Consensus 176 ~~g~GlGl~~~~~i~~~~gG~i~v~~~~~~g~~f~~~l~ 214 (215)
..|+||||++|+.+++.|||.+.+.|+.+++++|....+
T Consensus 106 ~~G~GLGL~i~~~lv~~~~G~i~~~s~~~~~~~~~~~~~ 144 (229)
T 1mu5_A 106 RGMYGLGVKAAVLYSQMHQDKPIEIETSPVNSKRIYTFK 144 (229)
T ss_dssp SCSCTTTHHHHHHHHHHHCCCCEEEEEECTTCSEEEEEE
T ss_pred CCCCCCCHHHHHHHHHHCCCCEEEEEEECCCCCEEEEEE
T ss_conf 884440699999999973795499999628997269987
No 16
>>1i58_A Chemotaxis protein CHEA; beta-alpha sandwich, signaling protein, transferase; HET: ACP ADP; 1.60A {Thermotoga maritima} (A:)
Probab=99.81 E-value=9.4e-20 Score=144.96 Aligned_cols=137 Identities=15% Similarity=0.152 Sum_probs=102.0
Q ss_pred CCCCCCCCHHHHHHHHHHHC-CCCCCCCCCCCC----CCCCHHHHHHHHHHHHHHHHHHHHH------------CCCCCC
Q ss_conf 00000000134444432201-223321100000----0100012344456766468765320------------011111
Q gi|254780891|r 77 VDSLIGLGDIEQVIEDFIAV-DKRVQVSWTGEK----IDLSRERAKILLNLFMVAHASLPRG------------GKVTIS 139 (215)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~----~~~~~~~~qvl~NLi~NA~~a~~~g------------g~I~i~ 139 (215)
.+....+.++...+++.... ...+++....+. ..++..+.+++.|++.||++|++.+ +.+.+.
T Consensus 5 v~l~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~l~nl~~nai~~~~~~~~~~~~~~~~~~~~~~~~ 84 (189)
T 1i58_A 5 VPISFVFNRFPRMVRDLAKKMNKEVNFIMRGEDTELDRTFVEEIGEPLLHLLRNAIDHGIEPKEERIAKGKPPIGTLILS 84 (189)
T ss_dssp EETHHHHTTHHHHHHHHHHHTTCCEEEEEECTTCEEEHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHTSCSSEEEEEE
T ss_pred CCHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEE
T ss_conf 76899999999999999998099769999165101117679999999999999999875405642466416888569999
Q ss_pred CCCCCCCEEEEEEECCCCCCCHHHHH------------------------HHHCCCCCCC-----CCCCCHHHHHHHHHH
Q ss_conf 23557720479998789844024588------------------------7405454578-----998720499999999
Q gi|254780891|r 140 VQDSKNENIFSLKINGNLARFPEKFT------------------------QIVDGNVEST-----IDSHDIQFYYVILLA 190 (215)
Q Consensus 140 ~~~~~~~~~i~V~D~G~Gi~~~e~~~------------------------~~~~~~~~~~-----~~g~GlGl~~~~~i~ 190 (215)
....++++.+.|.|+|+||+ ++... ++|+||++++ ..|+|||||+|+.|+
T Consensus 85 ~~~~~~~v~i~i~d~G~gi~-~~~~~~~~~~~~~~~~~d~g~g~~~~~~~~~fepf~~~~~~~~~~~gtGLGLaIv~~iv 163 (189)
T 1i58_A 85 ARHEGNNVVIEVEDDGRGID-KEKIIRKAIEKGLIDESKAATLSDQEILNFLFVPGFSTKEKVSEVSGRGVGMDVVKNVV 163 (189)
T ss_dssp EEEETTEEEEEEEECSSCCC-HHHHHHHHHHTTSSCHHHHTTCCHHHHHGGGGSTTCSHHHHHHGGGTCCCHHHHHHHHH
T ss_pred EEECCCEEEEEECCCCCCCC-HHHHHHHEEEEEEECHHHCCCCCHHHHHHHHCCCEEEECCCCCCCCCCCCCHHHHHHHH
T ss_conf 88526489999867867709-68801011122000311124666156665421320553023347799975499999999
Q ss_pred HHCCCEEEEEEECCCCEEEEEEEE
Q ss_conf 970987999987799269999941
Q gi|254780891|r 191 HENKIRLLPEIIDDHNVVLSALLE 214 (215)
Q Consensus 191 ~~~gG~i~v~~~~~~g~~f~~~l~ 214 (215)
+.|||+|+++|.+|+||+|++.||
T Consensus 164 ~~hgG~I~v~S~~g~Gt~f~i~LP 187 (189)
T 1i58_A 164 ESLNGSISIESEKDKGTKVTIRLP 187 (189)
T ss_dssp HHTTCEEEEEEETTTEEEEEEEEE
T ss_pred HHCCCEEEEEECCCCCEEEEEEEE
T ss_conf 987998999964999379999996
No 17
>>1b3q_A Protein (chemotaxis protein CHEA); histine kinase, signal transduction, multi- domains protein; 2.60A {Thermotoga maritima} (A:63-248)
Probab=99.81 E-value=2.4e-19 Score=142.35 Aligned_cols=133 Identities=15% Similarity=0.124 Sum_probs=96.4
Q ss_pred CCCHHHHHHHHHHHC-CCCCCCCCCCCC----CCCCHHHHHHHHHHHHHHHHHHHH------------HCCCCCCCCCCC
Q ss_conf 000134444432201-223321100000----010001234445676646876532------------001111123557
Q gi|254780891|r 82 GLGDIEQVIEDFIAV-DKRVQVSWTGEK----IDLSRERAKILLNLFMVAHASLPR------------GGKVTISVQDSK 144 (215)
Q Consensus 82 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~----~~~~~~~~qvl~NLi~NA~~a~~~------------gg~I~i~~~~~~ 144 (215)
.+.++...+++.... ...+++..+.+. ..+...+.+++.|++.||++|+.. .+.+.+.+...+
T Consensus 7 l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~d~~~~~~~l~ni~~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (186)
T 1b3q_A 7 VFNRFPRMVRDLAKKMNKEVNFIMRGEDTELDRTFVEEIGEPLLHLLRNAIDHGIEPKEERIAKGKPPIGTLILSARHEG 86 (186)
T ss_dssp HHTTHHHHHHHHHHHTTCCEEEEEECTTCEEEHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHTTCCSSEEEEEEEEEET
T ss_pred HHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCEEEEEEECC
T ss_conf 99999999998888737659999604664100230577888888998888774103551577641035543046777439
Q ss_pred CCEEEEEEECCCCCCCHHHHH------------------------HHHCCCCCCCC-----CCCCHHHHHHHHHHHHCCC
Q ss_conf 720479998789844024588------------------------74054545789-----9872049999999997098
Q gi|254780891|r 145 NENIFSLKINGNLARFPEKFT------------------------QIVDGNVESTI-----DSHDIQFYYVILLAHENKI 195 (215)
Q Consensus 145 ~~~~i~V~D~G~Gi~~~e~~~------------------------~~~~~~~~~~~-----~g~GlGl~~~~~i~~~~gG 195 (215)
+.+.+.|.|+|+||+ ++... ++|+||++++. +|+|||||+|+.|++.|||
T Consensus 87 ~~~~~~v~d~g~gi~-~e~~~~~~~~~~~~~~~d~g~gi~~~~~~~ifepf~~~~~~~~~~~GtGLGLaI~k~iv~~hgG 165 (186)
T 1b3q_A 87 NNVVIEVEDDGRGID-KEKIIRKAIEKGLIDESKAATLSDQEILNFLFVPGFSTKEKVSEVSGRGVGMDVVKNVVESLNG 165 (186)
T ss_dssp TEEEEEEEECSCCCC-HHHHHHHHHHSSSCCSTTTTTSCTHHHHSGGGSTTCC-----------CCCSHHHHHHHHHTTC
T ss_pred CEEEEEECCCCCCCC-CCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHCCEECCCCCCCCCCCCCHHHHHHHHHHHCCC
T ss_conf 889999856766531-1124321254102221024577868999874301321033224679987109999999997398
Q ss_pred EEEEEEECCCCEEEEEEEEC
Q ss_conf 79999877992699999419
Q gi|254780891|r 196 RLLPEIIDDHNVVLSALLEK 215 (215)
Q Consensus 196 ~i~v~~~~~~g~~f~~~l~~ 215 (215)
+|+++|.+|+||+|++.||-
T Consensus 166 ~I~v~S~~g~Gt~f~i~lPl 185 (186)
T 1b3q_A 166 SMGIESEKDKGTKVTIRLPL 185 (186)
T ss_dssp EEEEEEETTTEEEEEEEEES
T ss_pred EEEEEECCCCEEEEEEEECC
T ss_conf 28998268826899998513
No 18
>>1th8_A Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} (A:)
Probab=99.79 E-value=6.4e-19 Score=139.67 Aligned_cols=100 Identities=11% Similarity=0.016 Sum_probs=85.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHHH---HHHCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHCCCCCCC--CCCCCHHH
Q ss_conf 0100012344456766468765---320011111235577204799987898440245887405454578--99872049
Q gi|254780891|r 109 IDLSRERAKILLNLFMVAHASL---PRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST--IDSHDIQF 183 (215)
Q Consensus 109 ~~~~~~~~qvl~NLi~NA~~a~---~~gg~I~i~~~~~~~~~~i~V~D~G~Gi~~~e~~~~~~~~~~~~~--~~g~GlGl 183 (215)
..++..+.|++.||+.||++|+ +.+|.|+|++...++.+.+.|+|+|+||+ | ..++|.++++++ ..|+||||
T Consensus 34 ~~d~~~l~~vi~nli~NAi~h~~~~~~~g~I~i~~~~~~~~~~i~V~D~G~Gi~-~--~~~~f~~f~~~~~~~~G~GlGL 110 (145)
T 1th8_A 34 MDELTEIKTVVSEAVTNAIIHGYNNDPNGIVSISVIIEDGVVHLTVRDEGVGIP-D--IEEARQPLFTTKPELERSGMGF 110 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSTTCTTSEEEEEEEEETTEEEEEEEECSSCCS-C--HHHHTCCC-------CCCSCHH
T ss_pred HHHHHHHHHHHHHHHHHHHEEECCCCCCCEEEEEEEEECCEEEEEEECCCCCCC-C--HHCCCCCCCCCCCCCCCCCCHH
T ss_conf 789989999998863103025516899947999999817899999933767714-4--3204677740114789771049
Q ss_pred HHHHHHHHHCCCEEEEEEECCCCEEEEEEEEC
Q ss_conf 99999999709879999877992699999419
Q gi|254780891|r 184 YYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 (215)
Q Consensus 184 ~~~~~i~~~~gG~i~v~~~~~~g~~f~~~l~~ 215 (215)
|+++ +|+|+|+++|.+++|++|+++||.
T Consensus 111 ~ivk----~~~g~i~i~s~~g~Gt~f~i~lp~ 138 (145)
T 1th8_A 111 TIME----NFMDEVIVESEVNKGTTVYLKKHG 138 (145)
T ss_dssp HHHH----HHSSEEEEEEETTTEEEEEEEECC
T ss_pred HHHH----HHCCEEEEEECCCCCEEEEEEECC
T ss_conf 9999----859989999759994899999898
No 19
>>3ehh_A Sensor kinase (YOCF protein); four-helix bundle, GHL ATPase domain, transferase; HET: MSE ADP; 2.10A {Bacillus subtilis} PDB: 3ehj_A* 3gie_A* 3gif_A* 3gig_A* 3ehf_A* (A:89-218)
Probab=99.72 E-value=3.9e-17 Score=128.30 Aligned_cols=117 Identities=11% Similarity=-0.024 Sum_probs=89.6
Q ss_pred CCHHHHHHHHHH-HCCCCCCCCCCCCCC----CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCC
Q ss_conf 001344444322-012233211000000----100012344456766468765320011111235577204799987898
Q gi|254780891|r 83 LGDIEQVIEDFI-AVDKRVQVSWTGEKI----DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNL 157 (215)
Q Consensus 83 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~----~~~~~~~qvl~NLi~NA~~a~~~gg~I~i~~~~~~~~~~i~V~D~G~G 157 (215)
+.++.+.+...+ .....+.+..+.+.. ..+..+.|++.||+.||++|++ ++.|+|.+...++.+.|+|+|+|+|
T Consensus 6 L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~il~nli~NAikh~~-~~~I~i~~~~~~~~~~i~V~D~G~G 84 (130)
T 3ehh_A 6 LKDELINIKQILEAADIXFIYEEEKWPENISLLNENILSXCLKEAVTNVVKHSQ-AKTCRVDIQQLWKEVVITVSDDGTF 84 (130)
T ss_dssp HHHHHHHHHHHHHHTTCEEECCCCCCCSCCCHHHHHHHHHHHHHHHHHHHHHTC-CSEEEEEEEEETTEEEEEEEESSCC
T ss_pred HHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC-CCCCHHCCCCHHHHHHHCCCCCCCC
T ss_conf 334688999998640432278724776334704899999999999984553212-2110000012001110102333222
Q ss_pred CCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEEC
Q ss_conf 4402458874054545789987204999999999709879999877992699999419
Q gi|254780891|r 158 ARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 (215)
Q Consensus 158 i~~~e~~~~~~~~~~~~~~~g~GlGl~~~~~i~~~~gG~i~v~~~~~~g~~f~~~l~~ 215 (215)
|+ ++ +..|+|+||++++.+++.|||+|.++ .++|++|++.||+
T Consensus 85 i~-~~------------~~~g~GlGL~i~~~~~~~~gG~i~i~--s~~Gt~~~i~lP~ 127 (130)
T 3ehh_A 85 KG-EE------------NSFSKGHGLLGXRERLEFANGSLHID--TENGTKLTXAIPN 127 (130)
T ss_dssp CC---------------------CHHHHHHHHHHHTTCEEEEE--CSSSEEEEEEEEC
T ss_pred CC-CC------------CCCCCCCHHHHHHHHHHHCCCEEEEE--CCCCEEEEEEEEC
T ss_conf 22-56------------89999806999999999879889998--6998799999839
No 20
>>2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei} (B:31-232)
Probab=99.71 E-value=3.4e-17 Score=128.67 Aligned_cols=103 Identities=12% Similarity=0.021 Sum_probs=82.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHC---CCCCCCCCC-CCCEEEEEEECCCCCCCHHHHHHHHCCCCCCC--------CC
Q ss_conf 1000123444567664687653200---111112355-77204799987898440245887405454578--------99
Q gi|254780891|r 110 DLSRERAKILLNLFMVAHASLPRGG---KVTISVQDS-KNENIFSLKINGNLARFPEKFTQIVDGNVEST--------ID 177 (215)
Q Consensus 110 ~~~~~~~qvl~NLi~NA~~a~~~gg---~I~i~~~~~-~~~~~i~V~D~G~Gi~~~e~~~~~~~~~~~~~--------~~ 177 (215)
.++..+.|++.||+.||++|++.+| .|+|.+... ++.+.|+|+|+|+||+ ++.++++|.+++.+. .+
T Consensus 3 ~d~~~l~~vi~nLi~NAi~~~~~~g~~~~i~i~~~~~~~~~~~I~V~D~G~GI~-~e~~~~iF~~f~~t~k~~~~~~~~g 81 (202)
T 2q2e_B 3 SAPRSLITTVKEAVDNALDACEEAGILPDILVQVERTGPDYVTVIIEDNGPGIV-REQIPKVFAKLLYGSRFHALKQSRG 81 (202)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHTTTSCSCEEEECCEEETTTEEEEEEECCSCCCC-GGGHHHHHSCCCCC--CCCCC-CCS
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCEEEEEEEEECCCCC-HHHHHHHHHHHHCCCCCCCHHHCCC
T ss_conf 730099999999998489889854899844999996799746999997189999-9999999776603766012745589
Q ss_pred CCCHHHHHHHHHHHHCCCE-EEEEEECCC-CEEEEEEE
Q ss_conf 8720499999999970987-999987799-26999994
Q gi|254780891|r 178 SHDIQFYYVILLAHENKIR-LLPEIIDDH-NVVLSALL 213 (215)
Q Consensus 178 g~GlGl~~~~~i~~~~gG~-i~v~~~~~~-g~~f~~~l 213 (215)
|+||||++++.+++.|+|+ +.+.+..++ +..+++.+
T Consensus 82 ~~GlGL~~~~~~~~~~~g~~i~v~S~~~~~~~~~~f~~ 119 (202)
T 2q2e_B 82 QQGIGISAAVLYAQMTAGRHTKILSKTSPTAPAHYYEL 119 (202)
T ss_dssp SSSHHHHHHHHHHHHHTCCCCEEEEECSSSSCEEEEEC
T ss_pred CCCCCHHHHHHHHHHHCCCEEEEEEEECCCCCEEEEEE
T ss_conf 87566879999999753856999998579974489985
No 21
>>3ehg_A Sensor kinase (YOCF protein); GHL ATPase domain, transferase; HET: ATP; 1.74A {Bacillus subtilis} (A:)
Probab=99.48 E-value=5.6e-13 Score=101.92 Aligned_cols=113 Identities=9% Similarity=-0.021 Sum_probs=86.6
Q ss_pred HHHHHHHH-HCCCCCCCCCCCCCCCC----CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCH
Q ss_conf 44444322-01223321100000010----00123444567664687653200111112355772047999878984402
Q gi|254780891|r 87 EQVIEDFI-AVDKRVQVSWTGEKIDL----SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161 (215)
Q Consensus 87 ~~~~~~~~-~~~~~~~~~~~~~~~~~----~~~~~qvl~NLi~NA~~a~~~gg~I~i~~~~~~~~~~i~V~D~G~Gi~~~ 161 (215)
.+.+.++. ..+.++.++.+...... ...+.+++.|++.||++|.+ ++.|+|++...++.+.+.|+|+|+|+. +
T Consensus 8 i~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~l~~ii~ell~Na~kha~-~~~i~I~~~~~~~~~~i~v~d~g~g~~-~ 85 (128)
T 3ehg_A 8 LINIKQILEAADIMFIYEEEKWPENISLLNENILSMCLKEAVTNVVKHSQ-AKTCRVDIQQLWKEVVITVSDDGTFKG-E 85 (128)
T ss_dssp HHHHHHHHHHTTCEEECCCCSCCSCCCHHHHHHHHHHHHHHHHHHHHHTC-CSEEEEEEEEETTEEEEEEEESSCCCS-C
T ss_pred HHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC-CCEEEEEEEECCCEEEEEEECCCCCCC-C
T ss_conf 99999999987988999808984548988999999999999999998578-947999999729989999962864343-3
Q ss_pred HHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEEC
Q ss_conf 458874054545789987204999999999709879999877992699999419
Q gi|254780891|r 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 (215)
Q Consensus 162 e~~~~~~~~~~~~~~~g~GlGl~~~~~i~~~~gG~i~v~~~~~~g~~f~~~l~~ 215 (215)
.+..|+|+||++++..++.|||+++++ .++|++|++++|.
T Consensus 86 ------------~~~~~~G~GL~~i~~~~~~~gG~~~~~--s~~G~~v~i~iP~ 125 (128)
T 3ehg_A 86 ------------ENSFSKGHGLLGMRERLEFANGSLHID--TENGTKLTMAIPN 125 (128)
T ss_dssp ------------SSCCCTTSHHHHHHHHHHHTTCEEEEE--CSSSEEEEEEEEC
T ss_pred ------------CCCCCCCCCHHHHHHHHHHCCCEEEEE--CCCCEEEEEEEEC
T ss_conf ------------347877623789999999849899998--7999799999958
No 22
>>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transferase, two-component regulatory system; 3.80A {Thermotoga maritima} (A:130-194)
Probab=98.41 E-value=6.9e-07 Score=63.21 Aligned_cols=49 Identities=16% Similarity=0.174 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCC----CCHHHHHHHHHHHHHHHHHHH
Q ss_conf 9997745454227999999999996144----301478988899999999863
Q gi|254780891|r 17 LLCSRICHDIISPIGAIHNSLELLDEVG----IEDEVMQLIRLSSMSAIIRLK 65 (215)
Q Consensus 17 llas~IaHdlrtPL~~I~~~~elL~~~~----~~~~~~~~i~~~~~~~~~l~~ 65 (215)
.++++|||||||||++|.+++++|.... ...++.+.+.+.+.++..+++
T Consensus 5 ~~~a~isHelrtPL~~I~~~~e~l~~~~~~~~~~~~~~~~i~~~~~~l~~li~ 57 (65)
T 3a0r_A 5 EMTARVAHEIRNPITIIGGFIMRMKKHLDDPETLKKYINIITNELSRLETIVK 57 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSCSCSSCTTHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 11202243333131499999999971369869999999999986667899998
No 23
>>2c2a_A Sensor histidine kinase; phosphotransfer, PHOQ, selenomethionyl MAD, two-component systems, transferase; HET: ADP; 1.9A {Thermotoga maritima} (A:1-89)
Probab=98.26 E-value=4.8e-06 Score=57.88 Aligned_cols=51 Identities=20% Similarity=0.161 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC------CCHHHHHHHHHHHHHHHHHHH
Q ss_conf 999997745454227999999999996144------301478988899999999863
Q gi|254780891|r 15 VALLCSRICHDIISPIGAIHNSLELLDEVG------IEDEVMQLIRLSSMSAIIRLK 65 (215)
Q Consensus 15 aallas~IaHdlrtPL~~I~~~~elL~~~~------~~~~~~~~i~~~~~~~~~l~~ 65 (215)
-.-+.+.+||||||||++|.++++++.+.. ....+.+.+...+.++..+++
T Consensus 20 k~~f~~~vsHelrtPL~~i~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~~l~~li~ 76 (89)
T 2c2a_A 20 KTEFIANISHELRTPLTAIKAYAETIYNSLGELDLSTLKEFLEVIIDQSNHLENLLN 76 (89)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHHHHTGGGCCTTTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999979998289999999999998345569999999999999999999999999
No 24
>>1joy_A Protein (ENVZ_ecoli); histidine kinase, sensory transduction, osmolarity sensor protein, inner membrane, phosphorylation, transferase; NMR {Escherichia coli} (A:)
Probab=98.17 E-value=2.9e-06 Score=59.22 Aligned_cols=49 Identities=18% Similarity=0.283 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999977454542279999999999961443014789888999999998631
Q gi|254780891|r 16 ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKF 66 (215)
Q Consensus 16 allas~IaHdlrtPL~~I~~~~elL~~~~~~~~~~~~i~~~~~~~~~l~~~ 66 (215)
..+.+.|||||||||++|.++++++.++ ..++++.|...+.++..+++-
T Consensus 13 ~~f~~~isHeLrtPL~~i~~~~e~l~~~--~~~~l~~i~~~~~~l~~li~~ 61 (67)
T 1joy_A 13 TLLMAGVSHDLRTPLTRIRLATEMMSEQ--DGYLAESINKDIEECNAIIEQ 61 (67)
T ss_dssp HHHHTTTHHHHHHHHHHHHHHHHHHHHH--HTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999875176146488888799870235--799999999999999999999
No 25
>>1h7s_A PMS1 protein homolog 2; DNA repair, GHL ATPase, mismatch repair, HNPCC; 1.95A {Homo sapiens} (A:1-234)
Probab=97.30 E-value=0.00051 Score=44.99 Aligned_cols=76 Identities=9% Similarity=0.012 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHCCCCC------------CCCCCCC
Q ss_conf 0123444567664687653200111112355772047999878984402458874054545------------7899872
Q gi|254780891|r 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE------------STIDSHD 180 (215)
Q Consensus 113 ~~~~qvl~NLi~NA~~a~~~gg~I~i~~~~~~~~~~i~V~D~G~Gi~~~e~~~~~~~~~~~------------~~~~g~G 180 (215)
..+.+++.-|+.||+++....-.|.|.....+ .|.|+|+|+||+ ++.+........+ ...+-.|
T Consensus 33 ~~l~~vv~Eli~NsiDa~a~~i~i~i~~~~~~---~i~V~DnG~Gi~-~~~~~~~~~~~~tsk~~~~~d~~~~~s~GfrG 108 (234)
T 1h7s_A 33 LSLSTAVKELVENSLDAGATNIDLKLKDYGVD---LIEVSDNGCGVE-EENFEGLTLKHHTSKIQEFADLTQVETFGFRG 108 (234)
T ss_dssp CCHHHHHHHHHHHHHHTTCSEEEEEEEGGGTS---EEEEEECSCCCC-GGGSGGGGC----------CCTTCSEEESSSS
T ss_pred CCHHHHHHHHHHHHHCCCCCEEEEEEECCCEE---EEEEEECCCCCC-HHHHHHHHHHHCCCCCCCHHHCCCCCCCCCCH
T ss_conf 48899999999788658978899999879822---899998999979-99999998852688776134234567678426
Q ss_pred HHHHHHHHHHHH
Q ss_conf 049999999997
Q gi|254780891|r 181 IQFYYVILLAHE 192 (215)
Q Consensus 181 lGl~~~~~i~~~ 192 (215)
.||+.+..+.+.
T Consensus 109 eal~si~~lS~~ 120 (234)
T 1h7s_A 109 EALSSLCALSDV 120 (234)
T ss_dssp SHHHHHHHHSEE
T ss_pred HHHHHHHHHHHH
T ss_conf 349999984320
No 26
>>3cwv_A DNA gyrase, B subunit, truncated; structural genomics, unknown function, ATP-binding, isomerase, nucleotide-binding, topoisomerase; HET: DNA; 1.95A {Myxococcus xanthus dk 1622} (A:1-206)
Probab=97.20 E-value=0.0027 Score=40.42 Aligned_cols=86 Identities=17% Similarity=0.153 Sum_probs=58.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHH--CCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHH-----HCCCCCCCCCCCCHHHH
Q ss_conf 0012344456766468765320--0111112355772047999878984402458874-----05454578998720499
Q gi|254780891|r 112 SRERAKILLNLFMVAHASLPRG--GKVTISVQDSKNENIFSLKINGNLARFPEKFTQI-----VDGNVESTIDSHDIQFY 184 (215)
Q Consensus 112 ~~~~~qvl~NLi~NA~~a~~~g--g~I~i~~~~~~~~~~i~V~D~G~Gi~~~e~~~~~-----~~~~~~~~~~g~GlGl~ 184 (215)
+..+.+++..+|.||++-.-.+ ..|.|.+..++. ++|+|+|.||+ -+..... |+........++|+|+.
T Consensus 28 ~~gl~~lv~Eii~Na~De~~~~~~~~I~v~~~~dgs---vsV~d~GrGIP-~~~~~~~~~~~~~~~~~~~~~G~hGvG~s 103 (206)
T 3cwv_A 28 EYGLHHLVYFLLDVAYEEARRGECRDVVLEVGGDGS---IALFCTSRTVT-AENLVRVATGAGFLGRPPGDGWGWDSMLV 103 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCSEEEEEECTTSC---EEEEEEESSCC-HHHHHHHHTTTTGGGSSCCCSTTTTSSHH
T ss_pred CCCCEEEEEEEEECCHHHHHCCCCCEEEEEECCCCC---EEEEECCCCCE-EEEEEEEEECCCCCCCCCCCCCCCCCEEE
T ss_conf 882458998886454427745899779999999996---89992899963-20778864022002334666421342278
Q ss_pred HHHHHHHHCCCEEEEEEECCC
Q ss_conf 999999970987999987799
Q gi|254780891|r 185 YVILLAHENKIRLLPEIIDDH 205 (215)
Q Consensus 185 ~~~~i~~~~gG~i~v~~~~~~ 205 (215)
++-.+ .-.+.|+...++
T Consensus 104 vvNal----S~~~~v~v~r~g 120 (206)
T 3cwv_A 104 VSLAL----SSRYQVDIWADG 120 (206)
T ss_dssp HHHHT----EEEEEEEEEETT
T ss_pred EEEEE----ECCEEEEEEECC
T ss_conf 99775----127799999624
No 27
>>2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae} (A:26-278)
Probab=97.19 E-value=0.00063 Score=44.42 Aligned_cols=74 Identities=15% Similarity=0.272 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHHH--------------HCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHCC-C-----------
Q ss_conf 445676646876532--------------00111112355772047999878984402458874054-5-----------
Q gi|254780891|r 118 ILLNLFMVAHASLPR--------------GGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG-N----------- 171 (215)
Q Consensus 118 vl~NLi~NA~~a~~~--------------gg~I~i~~~~~~~~~~i~V~D~G~Gi~~~e~~~~~~~~-~----------- 171 (215)
.+.-|+.||.+|... .+.+.|.+..+.+.-.|.|+|+|.||+ .+.+...|.. .
T Consensus 5 ~lRELiqNA~DA~~~~~~~~~~~~~~~~~~~~~~I~i~~d~~~~~i~I~DnG~GMt-~~el~~~~~~i~~S~~~~~~~~~ 83 (253)
T 2cg9_A 5 FLRELISNASDALDKIRYKSLSDPKQLETEPDLFIRITPKPEQKVLEIRDSGIGMT-KAELINNLGTIAKSGTKAFMEAL 83 (253)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSCTTTTTTCCCCCEEEEEEGGGTEEEEEECSCCCC-HHHHHGGGSSSSSCTTHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCEEEEEECCCCCEEEEEECCCCCC-HHHHHHHHHHHCCCCHHHHHHHH
T ss_conf 18888873999999999875259200268887259999758889899994588889-99999873233021369999974
Q ss_pred ---CCC-CCCCCCHHHHHHHHHHHH
Q ss_conf ---457-899872049999999997
Q gi|254780891|r 172 ---VES-TIDSHDIQFYYVILLAHE 192 (215)
Q Consensus 172 ---~~~-~~~g~GlGl~~~~~i~~~ 192 (215)
... -.+-.|||+|-+..++..
T Consensus 84 ~~~~~~~~iG~fGIG~~S~f~va~~ 108 (253)
T 2cg9_A 84 SAGADVSMIGQFGVGFYSLFLVADR 108 (253)
T ss_dssp CSSCCCCCCCCTTCTTGGGGGTEEE
T ss_pred HCCCCCCHHCCCCCCCEEEEEEEEE
T ss_conf 4477510221466221256776147
No 28
>>1ei1_A DNA gyrase B, GYRB; ATPase domain, dimer, isomerase; HET: DNA ANP; 2.30A {Escherichia coli} (A:1-218)
Probab=97.08 E-value=0.0015 Score=42.04 Aligned_cols=86 Identities=14% Similarity=0.162 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH--CCCCCCCCCCCCCEEEEEEECCCCCCCH---H--------HHHHHHCCC-CCC----
Q ss_conf 012344456766468765320--0111112355772047999878984402---4--------588740545-457----
Q gi|254780891|r 113 RERAKILLNLFMVAHASLPRG--GKVTISVQDSKNENIFSLKINGNLARFP---E--------KFTQIVDGN-VES---- 174 (215)
Q Consensus 113 ~~~~qvl~NLi~NA~~a~~~g--g~I~i~~~~~~~~~~i~V~D~G~Gi~~~---e--------~~~~~~~~~-~~~---- 174 (215)
..+.+++..++.||++....+ ..|.|....++. ++|+|+|+||+.+ + .|..+..+. +..
T Consensus 33 ~gl~~l~~Eii~Na~De~~~~~~~~i~v~~~~d~~---i~V~d~GrGip~~~~~~~~~~~~e~vf~~l~ag~kf~~~~~~ 109 (218)
T 1ei1_A 33 TGLHHMVFEVVDNAIDEALAGHCKEIIVTIHADNS---VSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYK 109 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCEEEEEECTTSC---EEEEECSSCCCCSBCTTTSSBHHHHHHHSTTEESCSSSSSCS
T ss_pred CCCEEEEEEEEECHHHHHCCCCCCEEEEEEECCCC---EEEEECCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCE
T ss_conf 73516754544533344235999779999917992---999979976476676888970449998563466789999665
Q ss_pred -CCCCCCHHHHHHHHHHHHCCCEEEEEEECCC
Q ss_conf -8998720499999999970987999987799
Q gi|254780891|r 175 -TIDSHDIQFYYVILLAHENKIRLLPEIIDDH 205 (215)
Q Consensus 175 -~~~g~GlGl~~~~~i~~~~gG~i~v~~~~~~ 205 (215)
..+.+|+|+..+-.+.+ .+.|+...++
T Consensus 110 ~sgG~~GvG~svvNalS~----~~~v~v~rdg 137 (218)
T 1ei1_A 110 VSGGLHGVGVSVVNALSQ----KLELVIQREG 137 (218)
T ss_dssp SCSCCSSCHHHHHHHTEE----EEEEEEEETT
T ss_pred EECCCCCCCEEEEEECCC----EEEEEEEECC
T ss_conf 478998654599994388----7999999899
No 29
>>1y4s_A Chaperone protein HTPG; HSP90, molecular chaperone, ATPase; HET: ADP; 2.90A {Escherichia coli} PDB: 1y4u_A (A:1-235)
Probab=96.88 E-value=0.0031 Score=40.05 Aligned_cols=86 Identities=14% Similarity=0.207 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHHHHHHH--------------HCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHH-CCCCCCC---
Q ss_conf 1234445676646876532--------------001111123557720479998789844024588740-5454578---
Q gi|254780891|r 114 ERAKILLNLFMVAHASLPR--------------GGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV-DGNVEST--- 175 (215)
Q Consensus 114 ~~~qvl~NLi~NA~~a~~~--------------gg~I~i~~~~~~~~~~i~V~D~G~Gi~~~e~~~~~~-~~~~~~~--- 175 (215)
+..-++.-|+.||.+|... ...+.|.+..+...-.|.|+|+|.||+ .+++...+ ....+.+
T Consensus 27 ~~~~~lrELiqNA~DA~a~~v~~~~~~~~~~~~~~~~~I~~~~~~~~~~l~I~DnG~GMt-~~di~~~~~~ig~S~k~~~ 105 (235)
T 1y4s_A 27 NKEIFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDKDKRTLTISDNGVGMT-RDEVIDHLGTIAKSGTKSF 105 (235)
T ss_dssp GTTHHHHHHHHHHHHHHHHHHHHHHHCGGGGCSCCCCCEEEEEETTTTEEEEEECSSCCC-HHHHHHHHSCCSCCCCCCT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCCCC-HHHHHHHHHHEEEHHHHHH
T ss_conf 862338889874999999999987039411278988169999738999899996078789-9999975100053528999
Q ss_pred --------------CCCCCHHHHHHHHHHHHCCCEEEEEEECC
Q ss_conf --------------99872049999999997098799998779
Q gi|254780891|r 176 --------------IDSHDIQFYYVILLAHENKIRLLPEIIDD 204 (215)
Q Consensus 176 --------------~~g~GlGl~~~~~i~~~~gG~i~v~~~~~ 204 (215)
.+..|||.+=+..+ +-.+.+.+...
T Consensus 106 ~~~~~~~~~~~~~~~G~kGIG~lS~f~~----~~~v~v~T~~~ 144 (235)
T 1y4s_A 106 LESLGSDQAKDSQLIGQFGVGFYSAFIV----ADKVTVRTRAA 144 (235)
T ss_dssp TCC--------CCCCSSCCCSGGGHHHH----EEEEEEEEECS
T ss_pred HHHHHHHCCCCCCCCCEEEECCCCCCCC----CCEEEEEEECC
T ss_conf 9985530036655242110012221125----77799998027
No 30
>>1yc1_A HSP 86, heat shock protein HSP 90-alpha; cell-cycle, cancer, drug design, cell cycle; HET: 4BC; 1.70A {Homo sapiens} (A:)
Probab=96.88 E-value=0.00094 Score=43.33 Aligned_cols=84 Identities=14% Similarity=0.192 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHHHHH--------------HCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHH-HHHCCCCCC------
Q ss_conf 34445676646876532--------------001111123557720479998789844024588-740545457------
Q gi|254780891|r 116 AKILLNLFMVAHASLPR--------------GGKVTISVQDSKNENIFSLKINGNLARFPEKFT-QIVDGNVES------ 174 (215)
Q Consensus 116 ~qvl~NLi~NA~~a~~~--------------gg~I~i~~~~~~~~~~i~V~D~G~Gi~~~e~~~-~~~~~~~~~------ 174 (215)
..++.-||.||.+|... .+.+.|.+..+.+.-.|.|.|+|.||. .+.+. .+..-..++
T Consensus 70 ~~~lrELIqNA~DA~a~~~~~~~~~~~~~~~~~~~~i~i~~d~~~~~i~I~DnG~GMt-~~~i~~~~~~ig~S~k~~~~~ 148 (264)
T 1yc1_A 70 EIFLRELISNSSDALDKIRYETLTDPSKLDSGKELHINLIPNKQDRTLTIVDTGIGMT-KADLINNLGTIAKSGTKAFME 148 (264)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHCGGGGGGCCCCCEEEEEETTTTEEEEEECSCCCC-HHHHHHHHHSCTTSCHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCEEEEEECCCCCC-HHHHHHHHCCHHHCCHHHHHH
T ss_conf 6008788846999999999986639633457876631678607877799993686556-899997734043210366665
Q ss_pred ---------CCCCCCHHHHHHHHHHHHCCCEEEEEEECC
Q ss_conf ---------899872049999999997098799998779
Q gi|254780891|r 175 ---------TIDSHDIQFYYVILLAHENKIRLLPEIIDD 204 (215)
Q Consensus 175 ---------~~~g~GlGl~~~~~i~~~~gG~i~v~~~~~ 204 (215)
..+-.|||.+-+..++ -.+.|.+...
T Consensus 149 ~~~~~~~~~~iG~fGIGf~S~f~v~----d~v~V~S~~~ 183 (264)
T 1yc1_A 149 ALQAGADISMIGQFGVGFYSAYLVA----EKVTVITKHN 183 (264)
T ss_dssp HHHTTCCGGGGGGGTCGGGGHHHHE----EEEEEEEECT
T ss_pred HHHHCCCCCCCCCCCCCEEEEEECC----CCEEEEEECC
T ss_conf 4310121010010364168885226----8158998428
No 31
>>2ior_A Chaperone protein HTPG; heat shock protein, HSP90; HET: ADP; 1.65A {Escherichia coli} (A:)
Probab=96.75 E-value=0.0019 Score=41.35 Aligned_cols=86 Identities=14% Similarity=0.207 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHHHHHHH--------------HCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHH-CCCCCCC---
Q ss_conf 1234445676646876532--------------001111123557720479998789844024588740-5454578---
Q gi|254780891|r 114 ERAKILLNLFMVAHASLPR--------------GGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV-DGNVEST--- 175 (215)
Q Consensus 114 ~~~qvl~NLi~NA~~a~~~--------------gg~I~i~~~~~~~~~~i~V~D~G~Gi~~~e~~~~~~-~~~~~~~--- 175 (215)
+-.-++.-|+.||.+|... ...+.|.+......-.|.|.|+|.||+ .+.+...| .-..+.+
T Consensus 47 ~~~~~lrELiqNA~DA~a~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~i~I~DnG~GMs-~~~i~~~~~~ig~S~k~~~ 125 (235)
T 2ior_A 47 NKEIFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDKDKRTLTISDNGVGMT-RDEVIDHLGTIAKSGTKSF 125 (235)
T ss_dssp GTTHHHHHHHHHHHHHHHHHHHHHTSCGGGGTTCCCCCEEEEEETTTTEEEEEECSSCCC-HHHHHHHHTTCCCTTHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEECCCCCEEEEEECCEECC-HHHHHHHHHHHHCCCCHHH
T ss_conf 974215568874999999999986449510157754233112238886899971662525-8898877756511342556
Q ss_pred --------------CCCCCHHHHHHHHHHHHCCCEEEEEEECC
Q ss_conf --------------99872049999999997098799998779
Q gi|254780891|r 176 --------------IDSHDIQFYYVILLAHENKIRLLPEIIDD 204 (215)
Q Consensus 176 --------------~~g~GlGl~~~~~i~~~~gG~i~v~~~~~ 204 (215)
.+..|||.+=+..+ +-.+.|.+...
T Consensus 126 ~~~~~~~~~~~r~~iG~~GIG~lS~f~l----~~~~~v~T~~~ 164 (235)
T 2ior_A 126 LESLGSDQAKDSQLIGQFGVGFYSAFIV----ADKVTVRTRAA 164 (235)
T ss_dssp HHHCCSCHHHHHHHHTTCCCCGGGGGGT----EEEEEEEEECT
T ss_pred HHHHCCCCCCCCCCCCCCCCCEEEEEEE----CCEEEEEEECC
T ss_conf 6530122223444336567523688740----67899986214
No 32
>>3ied_A Heat shock protein; HSP90, chaperone, structural genomics, structural genomics consortium, SGC, stress response; HET: AN2; 2.01A {Plasmodium falciparum 3D7} (A:)
Probab=96.67 E-value=0.0028 Score=40.30 Aligned_cols=84 Identities=13% Similarity=0.122 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHH-------HHCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHCCC----------------CC
Q ss_conf 444567664687653-------2001111123557720479998789844024588740545----------------45
Q gi|254780891|r 117 KILLNLFMVAHASLP-------RGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN----------------VE 173 (215)
Q Consensus 117 qvl~NLi~NA~~a~~-------~gg~I~i~~~~~~~~~~i~V~D~G~Gi~~~e~~~~~~~~~----------------~~ 173 (215)
.....|+.|+.++.. ..+...|.+..+++.-.|.|+|+|.||+ ++++...+... ..
T Consensus 93 ~~~~eli~n~~dai~el~~ns~da~a~~I~I~~d~~~~~I~V~DnG~GMt-~~dl~~~~~~i~~S~~~~~~~~~~~~~~~ 171 (272)
T 3ied_A 93 KEKTENVNESTDKKENVEEEKNDIKKLIIKIKPDKEKKTLTITDNGIGMD-KSELINNLGTIAQSGTAKFLKQIEEGKAD 171 (272)
T ss_dssp ---------------------CGGGGCCEEEEEETTTTEEEEEECSCCCC-HHHHHHHTTCSCCHHHHHHHHHHHTTSSC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCEEEC-HHHHHHHHHHCCCCCCHHHHHHHHCCCCC
T ss_conf 22222222122221111112466666349988648789899995427750-89988654000444648899864114444
Q ss_pred -CCCCCCCHHHHHHHHHHHHCCCEEEEEEECCC
Q ss_conf -78998720499999999970987999987799
Q gi|254780891|r 174 -STIDSHDIQFYYVILLAHENKIRLLPEIIDDH 205 (215)
Q Consensus 174 -~~~~g~GlGl~~~~~i~~~~gG~i~v~~~~~~ 205 (215)
...+..|+|+|-+..++ -.+.|.+...+
T Consensus 172 ~~~iG~fGiG~~S~f~va----~~v~V~T~~~~ 200 (272)
T 3ied_A 172 SNLIGQFGVGFYSSFLVS----NRVEVYTKKED 200 (272)
T ss_dssp TTCGGGSCCGGGGGGGTE----EEEEEEEESSS
T ss_pred CCCCCCCCCCEEEEEEEE----EEEEEEEECCC
T ss_conf 431022573325788861----26999993476
No 33
>>2ioq_A Chaperone protein HTPG; heat shock protein, HSP90; 3.50A {Escherichia coli} PDB: 2iop_A (A:1-235)
Probab=96.65 E-value=0.0034 Score=39.80 Aligned_cols=86 Identities=14% Similarity=0.207 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHHHHHHH--------------HCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHH-CCCCCCC---
Q ss_conf 1234445676646876532--------------001111123557720479998789844024588740-5454578---
Q gi|254780891|r 114 ERAKILLNLFMVAHASLPR--------------GGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV-DGNVEST--- 175 (215)
Q Consensus 114 ~~~qvl~NLi~NA~~a~~~--------------gg~I~i~~~~~~~~~~i~V~D~G~Gi~~~e~~~~~~-~~~~~~~--- 175 (215)
+..-++.-|+.||.+|... ...+.|.+..+...-.|.|+|+|.||+ .+++...+ ....+.+
T Consensus 27 ~~~~~lrELiqNA~DA~a~~v~~~~~~~~~~~~~~~~~I~~~~~~~~~~l~I~DnG~GMt-~~di~~~~~~ig~S~k~~~ 105 (235)
T 2ioq_A 27 NKEIFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDKDKRTLTISDNGVGMT-RDEVIDHLGTIAKSGTKSF 105 (235)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHTSTTTTTTCCCCCEEEEEETTTTEEEEEECSCCCC-HHHHHHHHHHHCC------
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCEEEEEECCCCCEEEEEECCCCCC-HHHHHHHHHHHEEHHHHHH
T ss_conf 850669988872999999999886249120178988359999769899899997278889-9999987324500517999
Q ss_pred --------------CCCCCHHHHHHHHHHHHCCCEEEEEEECC
Q ss_conf --------------99872049999999997098799998779
Q gi|254780891|r 176 --------------IDSHDIQFYYVILLAHENKIRLLPEIIDD 204 (215)
Q Consensus 176 --------------~~g~GlGl~~~~~i~~~~gG~i~v~~~~~ 204 (215)
.+..|||.+=+..+ +-.+.+.+...
T Consensus 106 ~~~~~~~~~~~~~~~G~kGIG~lS~f~~----~~~v~v~T~~~ 144 (235)
T 2ioq_A 106 LESLGSDQAKDSQLIGQFGVGFYSAFIV----ADKVTVRTRAA 144 (235)
T ss_dssp ---------CCTTHHHHHHHHHHHHHHH----EEEEEEEEECT
T ss_pred HHHHHHCCCCCCCCCCCCCCCCEEEECC----CCEEEEEEECC
T ss_conf 9986521233300026455220010113----57799998037
No 34
>>1b63_A MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A {Escherichia coli} (A:1-207)
Probab=96.63 E-value=0.0062 Score=38.13 Aligned_cols=74 Identities=7% Similarity=0.065 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHCCCC------------CCCCCCCCH
Q ss_conf 12344456766468765320011111235577204799987898440245887405454------------578998720
Q gi|254780891|r 114 ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------------ESTIDSHDI 181 (215)
Q Consensus 114 ~~~qvl~NLi~NA~~a~~~gg~I~i~~~~~~~~~~i~V~D~G~Gi~~~e~~~~~~~~~~------------~~~~~g~Gl 181 (215)
....++.-|+.|++++......|.+... +.-.++|+|+|.||+ .+++........ .......|.
T Consensus 24 ~~~~av~el~~ns~Da~a~~~~i~v~~~---~~~~i~V~DnG~Gi~-~~~~~~~~~~~~~s~~~~~~~~~~~~~~g~~g~ 99 (207)
T 1b63_A 24 RPASVVKELVENSLDAGATRIDIDIERG---GAKLIRIRDNGCGIK-KDELALALARHATSKIASLDDLEAIISLGFRGE 99 (207)
T ss_dssp SHHHHHHHHHHHHHHTTCSEEEEEEEGG---GTSEEEEEECSCCCC-GGGHHHHHSTTCCSSCCSHHHHHTCCSSCCSSC
T ss_pred CHHHHHHHHHHHHHCCCCCEEEEEEECC---CEEEEEEEECCCCCC-HHHHHHHHHHHCCCCCCCHHHHCCHHHHHCCCC
T ss_conf 5779999998524348989899999869---878999998996758-788533566302578875212000134404761
Q ss_pred HHHHHHHHHH
Q ss_conf 4999999999
Q gi|254780891|r 182 QFYYVILLAH 191 (215)
Q Consensus 182 Gl~~~~~i~~ 191 (215)
|++.+..+..
T Consensus 100 g~~s~~~is~ 109 (207)
T 1b63_A 100 ALASISSVSR 109 (207)
T ss_dssp HHHHHHTTSE
T ss_pred HHHHHHHHCC
T ss_conf 2365564214
No 35
>>2wer_A ATP-dependent molecular chaperone HSP82; ATPase, cytoplasm, ATP-binding, phosphoprotein, stress response, nucleotide-binding; HET: RDC; 1.60A {Saccharomyces cerevisiae} PDB: 2weq_A* 2wep_A* 1zwh_A* 1zw9_A* 2fxs_A* 3c11_A* 3c0e_A* 2akp_A (A:)
Probab=96.56 E-value=0.0036 Score=39.61 Aligned_cols=85 Identities=13% Similarity=0.167 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHHHHHHH--------------CCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHH-CCCCC------
Q ss_conf 2344456766468765320--------------01111123557720479998789844024588740-54545------
Q gi|254780891|r 115 RAKILLNLFMVAHASLPRG--------------GKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV-DGNVE------ 173 (215)
Q Consensus 115 ~~qvl~NLi~NA~~a~~~g--------------g~I~i~~~~~~~~~~i~V~D~G~Gi~~~e~~~~~~-~~~~~------ 173 (215)
-.-++.-|+.||.+|.... ..+.|.+..+.+.-.|.|+|+|.||+ .+.+...| ....+
T Consensus 27 ~~~~lrELIqNa~DA~a~~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~I~DnG~GMs-~~~i~~~~~~ig~s~k~~~~ 105 (220)
T 2wer_A 27 KEIFLREIVSNASDALDKIRYKSLSDPKQLETEPDLFIRITPKPEQKVLEIRDSGIGMT-KAELINNLGTIAKSGTKAFM 105 (220)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHTTCGGGGGGCCCCCEEEEEEGGGTEEEEEECSCCCC-HHHHHHHTTTSCCTTHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCC-HHHHHHHHHHHHHHHHHHHH
T ss_conf 86109999876999999999985449600135755454211147664489842783035-89998888777531007777
Q ss_pred ---------CCCCCCCHHHHHHHHHHHHCCCEEEEEEECC
Q ss_conf ---------7899872049999999997098799998779
Q gi|254780891|r 174 ---------STIDSHDIQFYYVILLAHENKIRLLPEIIDD 204 (215)
Q Consensus 174 ---------~~~~g~GlGl~~~~~i~~~~gG~i~v~~~~~ 204 (215)
...+-.|||.+=+..+ +=.+.|.+...
T Consensus 106 ~~~~~~~~~~~~G~~GIG~~S~f~l----~~~v~v~T~~~ 141 (220)
T 2wer_A 106 EALSAGADVSMIGQFGVGFYSLFLV----ADRVQVISKSN 141 (220)
T ss_dssp HHHTTTCCGGGGGGGTCGGGGGGGT----EEEEEEEEECT
T ss_pred HHHHHCCHHHHHCCCCHHHHHHHHC----CCEEEEEEECC
T ss_conf 6531000001100000546555220----04269998238
No 36
>>1kij_A DNA gyrase subunit B; topoisomerase, gyrase B-coumarin complex; HET: DNA NOV; 2.30A {Thermus thermophilus} (A:1-217)
Probab=96.55 E-value=0.021 Score=34.78 Aligned_cols=86 Identities=10% Similarity=0.148 Sum_probs=55.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHH--HCCCCCCCCCCCCCEEEEEEECCCCCCCH----------HH-HHHHHCC------CC
Q ss_conf 001234445676646876532--00111112355772047999878984402----------45-8874054------54
Q gi|254780891|r 112 SRERAKILLNLFMVAHASLPR--GGKVTISVQDSKNENIFSLKINGNLARFP----------EK-FTQIVDG------NV 172 (215)
Q Consensus 112 ~~~~~qvl~NLi~NA~~a~~~--gg~I~i~~~~~~~~~~i~V~D~G~Gi~~~----------e~-~~~~~~~------~~ 172 (215)
...+.+++.-+|.||++.... +..|.|....++. ++|+|+|+||+.+ |. +..+..+ .+
T Consensus 30 ~~gl~~l~~Eii~NavDe~~~g~~~~i~v~~~~d~s---v~V~d~Grgip~~~~~~~~~~~~e~i~t~l~aggkf~~~~y 106 (217)
T 1kij_A 30 VEGYHHLFKEILDNAVDEALAGYATEILVRLNEDGS---LTVEDNGRGIPVDLMPEEGKPAVEVIYNTLHSGGKFEQGAY 106 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSCCEEEEEECTTSC---EEEEECSSCCCCSEETTTTEEHHHHHHHSSCEESGGGGSSC
T ss_pred CCCCEEEEEEEEECHHHHHCCCCCCEEEEEECCCCE---EEEEECCCCEECCCCCCCCCEEHEEEEEEECCCCCCCCCCC
T ss_conf 873217887666855566336999669999969986---99998886277577566795012012213113676578875
Q ss_pred CCCCCCCCHHHHHHHHHHHHCCCEEEEEEECC
Q ss_conf 57899872049999999997098799998779
Q gi|254780891|r 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDD 204 (215)
Q Consensus 173 ~~~~~g~GlGl~~~~~i~~~~gG~i~v~~~~~ 204 (215)
....+.+|+|+..+..+.+ .+.++...+
T Consensus 107 ~~sgGlhGvG~svvNAlS~----~l~v~v~r~ 134 (217)
T 1kij_A 107 KVSGGLHGVGASVVNALSE----WTVVEVFRE 134 (217)
T ss_dssp CCCSCSSTTSHHHHHHTEE----EEEEEEEET
T ss_pred CEECCCCCCCCHHHHHHHH----HEEEEEEEC
T ss_conf 1205767545178641010----159999975
No 37
>>3g7e_A DNA gyrase subunit B; isomerase; HET: DNA B46; 2.20A {Escherichia coli} PDB: 1kzn_A* 1aj6_A* (A:)
Probab=96.52 E-value=0.0065 Score=37.99 Aligned_cols=85 Identities=14% Similarity=0.153 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH--CCCCCCCCCCCCCEEEEEEECCCCCCCH----------H-HHHHHHCC-CCC-----
Q ss_conf 012344456766468765320--0111112355772047999878984402----------4-58874054-545-----
Q gi|254780891|r 113 RERAKILLNLFMVAHASLPRG--GKVTISVQDSKNENIFSLKINGNLARFP----------E-KFTQIVDG-NVE----- 173 (215)
Q Consensus 113 ~~~~qvl~NLi~NA~~a~~~g--g~I~i~~~~~~~~~~i~V~D~G~Gi~~~----------e-~~~~~~~~-~~~----- 173 (215)
.-+.+++..+|.||++..-.+ ..|.+....++. ++|+|+|.||+.+ | .|..+..+ .+.
T Consensus 20 ~gl~~i~~Eii~NavDe~~~~~~~~i~v~~~~d~~---v~V~d~Grgipv~~~~~~~~~~~e~i~t~l~ag~~fd~~~~~ 96 (203)
T 3g7e_A 20 TGLHHMVFEVVDNAIDEALAGHCKEIIVTIHADNS---VSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYK 96 (203)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCEEEEEECTTSC---EEEEECSSCCCCSCCTTTCCCHHHHHHHSTTCCSEECTTCCE
T ss_pred CCCEEEEEEEEEEHHHHHCCCCCCEEEEEECCCCE---EEEEECCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCCCCE
T ss_conf 72738998998821246305898789999978985---999989964576465666876777553335405777887614
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCEEEEEEECC
Q ss_conf 7899872049999999997098799998779
Q gi|254780891|r 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDD 204 (215)
Q Consensus 174 ~~~~g~GlGl~~~~~i~~~~gG~i~v~~~~~ 204 (215)
...+.+|+|+.++..+. -.+.|+...+
T Consensus 97 ~sgG~~GvG~~vvNalS----~~~~V~v~r~ 123 (203)
T 3g7e_A 97 VSGGLHGVGVSVVNALS----QKLELVIQRE 123 (203)
T ss_dssp ESCCCCSSCHHHHHHTE----EEEEEEEEET
T ss_pred ECCCCCCCCCEEEEEEE----EEEEEEEEEC
T ss_conf 02785785747889851----0799999989
No 38
>>2gqp_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, ligand, NECA, NPCA, adenosine; HET: PA7 PG4 1PE; 1.50A {Canis lupus familiaris} (A:)
Probab=96.50 E-value=0.0022 Score=40.97 Aligned_cols=86 Identities=16% Similarity=0.199 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHHHHHH--------------CCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHCCCCCCC------
Q ss_conf 344456766468765320--------------011111235577204799987898440245887405454578------
Q gi|254780891|r 116 AKILLNLFMVAHASLPRG--------------GKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST------ 175 (215)
Q Consensus 116 ~qvl~NLi~NA~~a~~~g--------------g~I~i~~~~~~~~~~i~V~D~G~Gi~~~e~~~~~~~~~~~~~------ 175 (215)
.-++.-|+.||.+|.... ..+.|......+.-.|.|+|+|.||+.++....+.....+.+
T Consensus 34 ~~alrELiqNA~DA~a~~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~I~DnG~GMs~~~i~~~~~~ig~s~k~~~~~~ 113 (236)
T 2gqp_A 34 EIFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDKEKNLLHVTDTGVGMTREELVKNLGTIAKSGTSEFLNK 113 (236)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHCTTTTTTCCCCCEEEEEETTTTEEEEEECSCCCCHHHHHHHHHCC-----------
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHCEECCCCCCCEEEEEECCCEECHHHHHHHHHHHHCCCCHHHHHH
T ss_conf 34199898789999999999866395000365410001013677758999945722008899887766640263888876
Q ss_pred --------------CCCCCHHHHHHHHHHHHCCCEEEEEEECCC
Q ss_conf --------------998720499999999970987999987799
Q gi|254780891|r 176 --------------IDSHDIQFYYVILLAHENKIRLLPEIIDDH 205 (215)
Q Consensus 176 --------------~~g~GlGl~~~~~i~~~~gG~i~v~~~~~~ 205 (215)
.+-.|||.+=+..+ +=.+.|.+...+
T Consensus 114 ~~~~~~~~~~~r~~iG~fGIG~~s~f~l----~~~v~v~T~~~~ 153 (236)
T 2gqp_A 114 MTEAQEDGQSTSELIGQFGVGFYSAFLV----ADKVIVTSKHNN 153 (236)
T ss_dssp ----------CHHHHHHTTCGGGGGGGT----EEEEEEEEECTT
T ss_pred HHHHCCCCCCHHHHHHHCCCCEEEEEEE----ECEEEEEEECCC
T ss_conf 3420134332044554326653788873----135899984167
No 39
>>2o1u_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, AMP-PNP, GP96; HET: ANP; 2.40A {Canis lupus familiaris} PDB: 2o1v_A* 2o1w_A 2o1t_A (A:1-256)
Probab=96.47 E-value=0.004 Score=39.34 Aligned_cols=87 Identities=16% Similarity=0.206 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH--------------CCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHH-HHCCCCCCC---
Q ss_conf 12344456766468765320--------------011111235577204799987898440245887-405454578---
Q gi|254780891|r 114 ERAKILLNLFMVAHASLPRG--------------GKVTISVQDSKNENIFSLKINGNLARFPEKFTQ-IVDGNVEST--- 175 (215)
Q Consensus 114 ~~~qvl~NLi~NA~~a~~~g--------------g~I~i~~~~~~~~~~i~V~D~G~Gi~~~e~~~~-~~~~~~~~~--- 175 (215)
+..-++.-|+.||.+|.... +...|....+.+.-.|.|.|+|.||+ .+.+.. +..-..+.+
T Consensus 45 d~~~alrELiqNA~DA~a~~v~i~~~~~~~~~~~~~~~I~i~~d~~~~~i~I~DnG~GMs-~~~i~~~~~~ig~S~k~~~ 123 (256)
T 2o1u_A 45 NKEIFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDKEKNLLHVTDTGVGMT-REELVKNLGTIAKSGTSEF 123 (256)
T ss_dssp SCTTHHHHHHHHHHHHHHHHHHHTTSCTTSSSSCCCCCEEEEEETTTTEEEEEECSCCCC-HHHHHHHTTC---------
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCCCC-HHHHHHHHHHHEEHHHHHH
T ss_conf 850639988873999999999886359300278888459998748889899994388889-9999987220000348999
Q ss_pred -----------------CCCCCHHHHHHHHHHHHCCCEEEEEEECCC
Q ss_conf -----------------998720499999999970987999987799
Q gi|254780891|r 176 -----------------IDSHDIQFYYVILLAHENKIRLLPEIIDDH 205 (215)
Q Consensus 176 -----------------~~g~GlGl~~~~~i~~~~gG~i~v~~~~~~ 205 (215)
.+-.|||.. -+-..+-.+.+.+...+
T Consensus 124 ~~~~~~~~~~~~~~r~~iG~fGIGrl----s~f~l~~~v~v~T~~~~ 166 (256)
T 2o1u_A 124 LNKMTEAQEDGQSTSELIGQFGVGFY----SAFLVADKVIVTSKHNN 166 (256)
T ss_dssp ----------------------CTTG----GGGGTEEEEEEEEECTT
T ss_pred HHHHHHHHHCCCCCHHHHCCCCCCCE----EEEEEEEEEEEEEECCC
T ss_conf 99977432013322112135663411----46688668999973588
No 40
>>1uyl_A HSP 86, heat shock protein HSP 90-alpha; ATPase, chaperone, ATP-binding; 1.4A {Homo sapiens} (A:)
Probab=96.27 E-value=0.003 Score=40.14 Aligned_cols=85 Identities=13% Similarity=0.140 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHHHHHH--------------HCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHH-CCCC-------
Q ss_conf 234445676646876532--------------001111123557720479998789844024588740-5454-------
Q gi|254780891|r 115 RAKILLNLFMVAHASLPR--------------GGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV-DGNV------- 172 (215)
Q Consensus 115 ~~qvl~NLi~NA~~a~~~--------------gg~I~i~~~~~~~~~~i~V~D~G~Gi~~~e~~~~~~-~~~~------- 172 (215)
-.-++.-|+.||.+|... +..+.|......+.-.|.|.|+|.||+ .+.+...| .-..
T Consensus 41 ~~~~lrELiqNA~DA~a~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~i~DnG~GMs-~~~i~~~~~~ig~S~k~~~~ 119 (236)
T 1uyl_A 41 KEIFLRELISNSSDALDKIRYESLTDPSKLDSGKELHINLIPNKQDRTLTIVDTGIGMT-KADLINNLGTIAKSGTKAFM 119 (236)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHCGGGGTTCCCCCEEEEEETTTTEEEEEECSCCCC-HHHHHTGGGSCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCCEEEEEECCCCEEEEEECCCCCC-HHHHHHHHCCHHHCCCHHHH
T ss_conf 42658999862999999999987269122044455542778843675799995386324-99999872522102338899
Q ss_pred --------CCCCCCCCHHHHHHHHHHHHCCCEEEEEEECC
Q ss_conf --------57899872049999999997098799998779
Q gi|254780891|r 173 --------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDD 204 (215)
Q Consensus 173 --------~~~~~g~GlGl~~~~~i~~~~gG~i~v~~~~~ 204 (215)
....+-.|||.+=+. ..+-.+.|.+...
T Consensus 120 ~~~~~~~~~~~iG~kGIG~~S~f----~l~~~v~v~S~~~ 155 (236)
T 1uyl_A 120 EALQAGADISMIGQFGVGFYSAY----LVAEKVTVITKHN 155 (236)
T ss_dssp HHHHTTCCGGGGGGGTCGGGGGG----GTEEEEEEEEECT
T ss_pred HHHHHCCCCCHHCCCCCEEEEEE----ECCCCEEEEEECC
T ss_conf 86541020001000263056643----0368459999538
No 41
>>1s16_A Topoisomerase IV subunit B; two-domain protein complexed with ADPNP; HET: ANP; 2.10A {Escherichia coli} (A:1-217)
Probab=96.23 E-value=0.064 Score=31.68 Aligned_cols=92 Identities=11% Similarity=0.084 Sum_probs=57.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHH--CCCCCCCCCCCCCEEEEEEECCCCCCCH----------HH-HHHHHCC-C
Q ss_conf 0000100012344456766468765320--0111112355772047999878984402----------45-8874054-5
Q gi|254780891|r 106 GEKIDLSRERAKILLNLFMVAHASLPRG--GKVTISVQDSKNENIFSLKINGNLARFP----------EK-FTQIVDG-N 171 (215)
Q Consensus 106 ~~~~~~~~~~~qvl~NLi~NA~~a~~~g--g~I~i~~~~~~~~~~i~V~D~G~Gi~~~----------e~-~~~~~~~-~ 171 (215)
+....-...+.+++.-++.||++....| ..|.+....++. ++|+|+|.||+.+ +. |..+..+ .
T Consensus 23 P~mYiGs~~l~~l~~EIidNavDe~~~~~~~~i~~~~~~dg~---i~V~d~Grgipv~~~~~~~~~~~e~i~t~l~ag~k 99 (217)
T 1s16_A 23 PGMYTDTTRPNHLGQEVIDNSVDEALAGHAKRVDVILHADQS---LEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGK 99 (217)
T ss_dssp GGGTSCTTSTHHHHHHHHHHHHHHHHTTCCSEEEEEECTTSC---EEEEECSSCCCCSBCTTTCSBHHHHHHHCTTEESC
T ss_pred CCCEECCCCCCEEEEEEEECCHHHHHCCCCCEEEEEEECCCE---EEEEECCCCEEEEECCCCCCCEEEEEEEEECCCCC
T ss_conf 967778998430786999856527744999679999948997---99998998577634056785047884754125787
Q ss_pred -----CCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECC
Q ss_conf -----457899872049999999997098799998779
Q gi|254780891|r 172 -----VESTIDSHDIQFYYVILLAHENKIRLLPEIIDD 204 (215)
Q Consensus 172 -----~~~~~~g~GlGl~~~~~i~~~~gG~i~v~~~~~ 204 (215)
+....+.+|+|+.++-.+ .-.+.++...+
T Consensus 100 fd~~~~~~sgGlhGvG~svvNal----S~~l~v~v~r~ 133 (217)
T 1s16_A 100 FSNKNYQFSGGLHGVGISVVNAL----SKRVEVNVRRD 133 (217)
T ss_dssp SSSSSCSSCSCCSSCHHHHHHHT----EEEEEEEEEET
T ss_pred CCCCCCCCCCCCCCCEEEEEEEE----EEEEEEEEEEC
T ss_conf 66676212577654125666774----01579999517
No 42
>>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis lupus familiaris} (A:)
Probab=96.21 E-value=0.0049 Score=38.79 Aligned_cols=84 Identities=17% Similarity=0.222 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHHHHH--------------HCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHCCCCCC-------
Q ss_conf 34445676646876532--------------001111123557720479998789844024588740545457-------
Q gi|254780891|r 116 AKILLNLFMVAHASLPR--------------GGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVES------- 174 (215)
Q Consensus 116 ~qvl~NLi~NA~~a~~~--------------gg~I~i~~~~~~~~~~i~V~D~G~Gi~~~e~~~~~~~~~~~~------- 174 (215)
.-++.-|+.||.+|... .+.+.|.+..+.+.-.|.|+|+|.||+.++....+.....+.
T Consensus 30 ~~~lrELi~Na~DA~~~~~~~~~~~~~~~~~~~~~~i~i~~d~~~~~i~i~DnG~GMt~~~i~~~~~~ig~s~~~~~~~~ 109 (269)
T 1qy5_A 30 EIFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDKEKNLLHVTDTGVGMTREELVKNLGTIAKSGTSEFLNK 109 (269)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHCTTTTTTCCCCCEEEEEETTTTEEEEEECSCCCCHHHHHHHHHSCCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCHHHHHHH
T ss_conf 25489998769999999999853484113689882267213688768999816434459998887665531242899875
Q ss_pred -------------CCCCCCHHHHHHHHHHHHCCCEEEEEEEC
Q ss_conf -------------89987204999999999709879999877
Q gi|254780891|r 175 -------------TIDSHDIQFYYVILLAHENKIRLLPEIID 203 (215)
Q Consensus 175 -------------~~~g~GlGl~~~~~i~~~~gG~i~v~~~~ 203 (215)
..+-.|+|.|=+..++. .+.|.+..
T Consensus 110 ~~~~~~~~~~~~~~iG~fGiG~~s~f~~~~----~v~v~tk~ 147 (269)
T 1qy5_A 110 MTEAQEDGQSTSELIGQFGVGFYSAFLVAD----KVIVTSKH 147 (269)
T ss_dssp HHHHHHHTCCCHHHHHHTTCGGGGGGGTEE----EEEEEEEC
T ss_pred HHHCCCCCCCCHHHHHCCCCCEEEEEEEEC----EEEEEEEC
T ss_conf 231123443201134206753178898526----69999713
No 43
>>3fv5_A DNA topoisomerase 4 subunit B; topoisomerase IV B subunit complex, antibiotic resistance, ATP-binding, nucleotide-binding; HET: DNA 1EU; 1.80A {Escherichia coli} PDB: 1s14_A* (A:)
Probab=96.16 E-value=0.037 Score=33.21 Aligned_cols=90 Identities=11% Similarity=0.097 Sum_probs=56.5
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHH--CCCCCCCCCCCCCEEEEEEECCCCCCCH----------HH-HHHHHCCC---
Q ss_conf 00100012344456766468765320--0111112355772047999878984402----------45-88740545---
Q gi|254780891|r 108 KIDLSRERAKILLNLFMVAHASLPRG--GKVTISVQDSKNENIFSLKINGNLARFP----------EK-FTQIVDGN--- 171 (215)
Q Consensus 108 ~~~~~~~~~qvl~NLi~NA~~a~~~g--g~I~i~~~~~~~~~~i~V~D~G~Gi~~~----------e~-~~~~~~~~--- 171 (215)
...-...+.+++.-++.||++..-.+ ..|.|....++. ++|.|+|.||+.. |. +..+..+.
T Consensus 11 myiGs~gl~~l~~Eii~NavDe~~~~~~~~i~v~~~~dg~---vsV~d~GrgiPv~~~~~~~~~~~E~v~t~l~ag~kfd 87 (201)
T 3fv5_A 11 MYTDTTRPNHLGQEVIDNSVDEALAGHAKRVDVILHADQS---LEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFS 87 (201)
T ss_dssp GTSCTTSTHHHHHHHHHHHHHHHHTTCCSEEEEEECTTSC---EEEEECSSCCCCSBCTTCSSBHHHHHHHCC-------
T ss_pred CEECCCCCCEEEEEEEECCHHHHHCCCCCEEEEEEECCCC---EEEEECCCCEEEEECCCCCCCEEEEEEEEEECCCCCC
T ss_conf 2689988770786888813548754898379999918980---9999978964685867789714599999970357678
Q ss_pred ---CCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECC
Q ss_conf ---457899872049999999997098799998779
Q gi|254780891|r 172 ---VESTIDSHDIQFYYVILLAHENKIRLLPEIIDD 204 (215)
Q Consensus 172 ---~~~~~~g~GlGl~~~~~i~~~~gG~i~v~~~~~ 204 (215)
+....+.+|+|+.++..+. -.+.|+...+
T Consensus 88 ~~~~~~sgG~~GvG~svvNalS----~~~~V~v~r~ 119 (201)
T 3fv5_A 88 NKNYQFSGGLHGVGISVVNALS----KRVEVNVRRD 119 (201)
T ss_dssp --------------CHHHHHTE----EEEEEEEEET
T ss_pred CCCCCCCCCCCCCCCEEEEEEC----CCEEEEEECC
T ss_conf 8764113775760523447651----6169999418
No 44
>>1pvg_A DNA topoisomerase II; GHKL ATPase domain; HET: DNA ANP; 1.80A {Saccharomyces cerevisiae} (A:1-271)
Probab=96.11 E-value=0.017 Score=35.36 Aligned_cols=79 Identities=15% Similarity=0.095 Sum_probs=48.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHC--CCCCCCCCCCCCEEEEEEECCCCCCCH----------HH-HHHHHCC-C-----C
Q ss_conf 00123444567664687653200--111112355772047999878984402----------45-8874054-5-----4
Q gi|254780891|r 112 SRERAKILLNLFMVAHASLPRGG--KVTISVQDSKNENIFSLKINGNLARFP----------EK-FTQIVDG-N-----V 172 (215)
Q Consensus 112 ~~~~~qvl~NLi~NA~~a~~~gg--~I~i~~~~~~~~~~i~V~D~G~Gi~~~----------e~-~~~~~~~-~-----~ 172 (215)
..-+.+++.-+|.||++..-.|. .+.+.+. ....-.|+|+|+|+||+.+ |. |..+..+ . +
T Consensus 62 ~~gl~~i~~Eil~NavDe~~~~~~~~~~~~v~-~~~dgsisV~d~GrGIPv~~~~~~~~~~~E~i~t~l~aggkfd~~~y 140 (271)
T 1pvg_A 62 VPGLFKIFDEILVNAADNKVRDPSXKRIDVNI-HAEEHTIEVKNDGKGIPIEIHNKENIYIPEXIFGHLLTSSNYDDDEK 140 (271)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCTTCCEEEEEE-ETTTTEEEEEEESSCCCCSBCTTTCSBHHHHHHHSSSEESCCCTTSC
T ss_pred CCCCEEEECEEEECHHHHHHCCCCCCEEEEEE-ECCCCEEEEEECCCCCCEEECCCCCCCCEEEEEEEEECCCCCCCCCC
T ss_conf 66011464689998124765277886699999-67998899996896346226566786412887777621653347874
Q ss_pred CCCCCCCCHHHHHHHHHHH
Q ss_conf 5789987204999999999
Q gi|254780891|r 173 ESTIDSHDIQFYYVILLAH 191 (215)
Q Consensus 173 ~~~~~g~GlGl~~~~~i~~ 191 (215)
....+.+|+|+.++..+-+
T Consensus 141 kvsgGlhGvG~svvNalS~ 159 (271)
T 1pvg_A 141 KVTGGRNGYGAKLCNIFST 159 (271)
T ss_dssp CCCSCCSSCHHHHHHHTEE
T ss_pred EECCCCCCCCHHHHHHHHH
T ss_conf 3328866536525566513
No 45
>>1zxm_A TOPO IIA ATPase, DNA topoisomerase II, alpha isozyme; GHKL nucleotide-binding fold; HET: DNA ANP; 1.87A {Homo sapiens} PDB: 1zxn_A* (A:1-247)
Probab=94.96 E-value=0.057 Score=31.98 Aligned_cols=95 Identities=14% Similarity=0.097 Sum_probs=53.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHH--CCCCCCCCCCCCCEEEEEEECCCCCCCH----------HH-HHHHHCC-CC-----
Q ss_conf 0012344456766468765320--0111112355772047999878984402----------45-8874054-54-----
Q gi|254780891|r 112 SRERAKILLNLFMVAHASLPRG--GKVTISVQDSKNENIFSLKINGNLARFP----------EK-FTQIVDG-NV----- 172 (215)
Q Consensus 112 ~~~~~qvl~NLi~NA~~a~~~g--g~I~i~~~~~~~~~~i~V~D~G~Gi~~~----------e~-~~~~~~~-~~----- 172 (215)
..-+.+++.-+|.||++..-.+ +.+.+... ..+.-.++|+|+|.||+.+ |. +..+..+ .+
T Consensus 50 ~~gl~~l~~Eii~NAvDe~~~~~~~~~~v~~~-~~~dgsisV~d~GrGiPv~~~~~~~~~~~e~v~t~l~ag~kfd~~~y 128 (247)
T 1zxm_A 50 VPGLYKIFDEILVNAADNKQRDPKMSCIRVTI-DPENNLISIWNNGKGIPVVEHKVEKMYVPALIFGQLLTSSNYDDDEK 128 (247)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCTTCCEEEEEE-ETTTTEEEEEEESSCCCCSEETTTTEEHHHHHHHSSSEESCCCGGGC
T ss_pred CCEEEEEEEEEEECHHHHHHHCCCCCEEEEEE-ECCCCEEEEEECCCCCEEEECCCCCCCCHHHHHEEECCCCCCCCCCC
T ss_conf 86213899899996654886567984799999-77999899986797613300356774412343212001466666541
Q ss_pred CCCCCCCCHHHHHHHHHHHHCCCEEEEEEE-CCCCEEEEE
Q ss_conf 578998720499999999970987999987-799269999
Q gi|254780891|r 173 ESTIDSHDIQFYYVILLAHENKIRLLPEII-DDHNVVLSA 211 (215)
Q Consensus 173 ~~~~~g~GlGl~~~~~i~~~~gG~i~v~~~-~~~g~~f~~ 211 (215)
....+.+|+|+.++..+.+ .+.++.. ...|-++..
T Consensus 129 ~~sgGlhGvG~~vvNalS~----~~~vev~~~~~~~~~~~ 164 (247)
T 1zxm_A 129 KVTGGRNGYGAKLCNIFST----KFTVETASREYKKMFKQ 164 (247)
T ss_dssp CCCSCCSSCHHHHHHHTEE----EEEEEEEETTTTEEEEE
T ss_pred EEECCEEEEHHHHHHHHHH----HHHHHHHHHHHHHEEEE
T ss_conf 0211111210334445667----77655544432210121
No 46
>>3g75_A DNA gyrase subunit B; antibiotic resistance, isomerase; HET: DNA B48; 2.30A {Staphylococcus aureus} PDB: 3g7b_A* (A:)
Probab=93.54 E-value=0.13 Score=29.70 Aligned_cols=80 Identities=8% Similarity=0.015 Sum_probs=48.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHH--CCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 0012344456766468765320--01111123557720479998789844024588740545457899872049999999
Q gi|254780891|r 112 SRERAKILLNLFMVAHASLPRG--GKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILL 189 (215)
Q Consensus 112 ~~~~~qvl~NLi~NA~~a~~~g--g~I~i~~~~~~~~~~i~V~D~G~Gi~~~e~~~~~~~~~~~~~~~g~GlGl~~~~~i 189 (215)
+.-+.+++.-++.||++-.-.+ ..|.+.+..++. ++|+|+|.||+... ..-+ ..-..-+|+|..++
T Consensus 18 ~~gl~~~v~Eil~Na~De~~~~~~~~i~v~~~~dg~---isV~ddGrgip~~~--~~~~----~~s~g~~GvG~svv--- 85 (184)
T 3g75_A 18 ERGLHHLVWEIVDNSIDEALAGYANQIEVVIEKDNW---IKVTDNGRGIPVDI--QEKM----GRPAVEVILTSSVV--- 85 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSCCEEEEEECGGGC---EEEEECSSCCCCCB--CTTT----SCBHHHHHHTTCHH---
T ss_pred CCCCEEEEEEEEEHHHHHHHCCCCCEEEEEECCCCC---EEEEEECCCCEEEE--CCCC----CCCHHHEEEEEEEE---
T ss_conf 863123420220436668765977443899968996---99999347834555--3555----43435576310896---
Q ss_pred HHHCCCEEEEEEECC
Q ss_conf 997098799998779
Q gi|254780891|r 190 AHENKIRLLPEIIDD 204 (215)
Q Consensus 190 ~~~~gG~i~v~~~~~ 204 (215)
....-.+.|+...+
T Consensus 86 -NalS~~~~V~v~r~ 99 (184)
T 3g75_A 86 -NALSQDLEVYVHRN 99 (184)
T ss_dssp -HHTEEEEEEEEEET
T ss_pred -EECCCEEEEEEEEC
T ss_conf -85678699999989
No 47
>>3lmm_A Uncharacterized protein; multi-domained alpha-beta protein, structural genomics, PSI- 2, protein structure initiative; 3.00A {Corynebacterium diphtheriae} (A:161-409)
Probab=75.26 E-value=5.5 Score=19.37 Aligned_cols=92 Identities=10% Similarity=0.002 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHHHHH---HC-CCCCCCCCCCCCEEEEEEECCCCCC--CH-----------HHHHHHHCCCCCCCCCC
Q ss_conf 34445676646876532---00-1111123557720479998789844--02-----------45887405454578998
Q gi|254780891|r 116 AKILLNLFMVAHASLPR---GG-KVTISVQDSKNENIFSLKINGNLAR--FP-----------EKFTQIVDGNVESTIDS 178 (215)
Q Consensus 116 ~qvl~NLi~NA~~a~~~---gg-~I~i~~~~~~~~~~i~V~D~G~Gi~--~~-----------e~~~~~~~~~~~~~~~g 178 (215)
..++.-.+.||+-|-+- ++ .|.|....+. |.|+..|.-.. .+ ..+.++|..- .-...
T Consensus 138 ~~aiREal~NAl~HRdY~~~~~~~v~I~i~~dr----iei~spG~l~~~~~~e~~~~~s~~RNp~ia~~f~~l--~l~E~ 211 (249)
T 3lmm_A 138 RLAVREAXLNAXIHRDWNRSEPIDVRWIELDST----LIVRSPGGFPAAITSENVLSNRAARYPALADLYRAL--GLVDK 211 (249)
T ss_dssp HHHHHHHHHHHHHHSCSSSSSCEEEEEETTTTE----EEEEEESCCCTTCCTTSSTTCCCCSCHHHHHHHHHT--TCSCS
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCE----EEEECCCCCCCCCCHHHHCCCCCCCCHHHHHHHHHC--CCHHC
T ss_conf 789999999999876554058816899984899----999679978888798882689777797999999971--72240
Q ss_pred CCHHHHHHHHHHHHCCCEE-EEEEECCCCEEEEEEEEC
Q ss_conf 7204999999999709879-999877992699999419
Q gi|254780891|r 179 HDIQFYYVILLAHENKIRL-LPEIIDDHNVVLSALLEK 215 (215)
Q Consensus 179 ~GlGl~~~~~i~~~~gG~i-~v~~~~~~g~~f~~~l~~ 215 (215)
.|-|..-....++.+|+.- .++ ..++..|.++||+
T Consensus 212 ~G~Gi~ri~~~~~~~g~~~P~~~--~~~~~~~~v~l~~ 247 (249)
T 3lmm_A 212 QGVGVDRXYQAXIALGHRPPTIE--EIAGPFVETTLVG 247 (249)
T ss_dssp SHHHHHHHHHHHHHTTCCCCEEE--EETTTEEEEEEEC
T ss_pred CCCHHHHHHHHHHHCCCCCCEEE--ECCCCEEEEEEEC
T ss_conf 29269999999997599998069--4589879999707
No 48
>>2r8q_A Class I phosphodiesterase PDEB1; leishimaniasis, parasite inhibitor selectivity, CAMP phosphodiesterase, hydrolase; HET: IBM; 1.50A {Leishmania major} (A:122-258)
Probab=50.27 E-value=10 Score=17.67 Aligned_cols=26 Identities=31% Similarity=0.655 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHH-------------HHHHHHHH
Q ss_conf 967687999997745454-------------22799999
Q gi|254780891|r 9 LSSMDLVALLCSRICHDI-------------ISPIGAIH 34 (215)
Q Consensus 9 ~~~~~laallas~IaHdl-------------rtPL~~I~ 34 (215)
++.++..+++.|.++||+ ++||+...
T Consensus 4 l~~le~~alliAal~HDv~HpG~~N~fl~~~~~~La~~Y 42 (137)
T 2r8q_A 4 LTELECYVLLVTALVHDLDHMGVNNSFYLKTDSPLGILS 42 (137)
T ss_dssp SCHHHHHHHHHHHHHTTTTCCSCCHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCCHHHHHH
T ss_conf 998999999999998067999888589997388999876
No 49
>>1a05_A IPMDH, IMDH, 3-isopropylmalate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase, leucine biosynthesis; HET: IPM; 2.00A {Thiobacillus ferrooxidans} (A:)
Probab=45.31 E-value=19 Score=15.90 Aligned_cols=14 Identities=14% Similarity=0.055 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 44567664687653
Q gi|254780891|r 118 ILLNLFMVAHASLP 131 (215)
Q Consensus 118 vl~NLi~NA~~a~~ 131 (215)
....++.-|.++..
T Consensus 166 ~~~ri~r~Af~~A~ 179 (358)
T 1a05_A 166 EIRRIAHVAFRAAQ 179 (358)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
T ss_conf 99999999988875
No 50
>>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} (A:)
Probab=32.41 E-value=31 Score=14.62 Aligned_cols=25 Identities=20% Similarity=0.335 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9977454542279999999999961
Q gi|254780891|r 18 LCSRICHDIISPIGAIHNSLELLDE 42 (215)
Q Consensus 18 las~IaHdlrtPL~~I~~~~elL~~ 42 (215)
=+..+||.+.+|+.-|...++-|..
T Consensus 18 da~qLS~ql~~P~plv~AMLerL~a 42 (78)
T 1xn7_A 18 EAAQISQTLNTPQPMINAMLQQLES 42 (78)
T ss_dssp CHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 0999998876987899999999997
No 51
>>1f0j_A PDE4B, phosphodiesterase 4B; PDE phosphodiesterase, hydrolase; 1.77A {Homo sapiens} (A:1-245)
Probab=25.63 E-value=25 Score=15.17 Aligned_cols=21 Identities=19% Similarity=0.529 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q ss_conf 967687999997745454227
Q gi|254780891|r 9 LSSMDLVALLCSRICHDIISP 29 (215)
Q Consensus 9 ~~~~~laallas~IaHdlrtP 29 (215)
++..+..+++.|.++||+.-|
T Consensus 108 l~~~e~~alliAal~HDi~Hp 128 (245)
T 1f0j_A 108 FTDLEILAAIFAAAIHDVDHP 128 (245)
T ss_dssp SCHHHHHHHHHHHHHTTTTCC
T ss_pred CCHHHHHHHHHHHHHCCCCCC
T ss_conf 898999999999998047999
No 52
>>2our_A CAMP and CAMP-inhibited CGMP 3',5'-cyclic phosphodiesterase 10A; PDE10, substrate specificity, hydrolase; HET: CMP; 1.45A {Homo sapiens} PDB: 2ous_A 2ouu_A* 2wey_A* 2oun_A* 2oup_A 2ouq_A* 2ouv_A 2ouy_A* 2o8h_A* 2ovv_A* 2ovy_A* (A:1-190)
Probab=25.43 E-value=26 Score=15.13 Aligned_cols=21 Identities=5% Similarity=0.080 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q ss_conf 454542279999999999961
Q gi|254780891|r 22 ICHDIISPIGAIHNSLELLDE 42 (215)
Q Consensus 22 IaHdlrtPL~~I~~~~elL~~ 42 (215)
+.-.++-|...+..++..++.
T Consensus 52 l~~~~~i~~~~l~~Fl~~v~~ 72 (190)
T 2our_A 52 SCGTSCFELEKLCRFIMSVKK 72 (190)
T ss_dssp HHCTTSSCHHHHHHHHHHHHH
T ss_pred HHHHCCCCHHHHHHHHHHHHH
T ss_conf 677628899999999999997
No 53
>>3g4g_A DPDE3, PDE43, CAMP-specific 3',5'-cyclic phosphodiesterase 4D; PDE4D, UCR2, alternative splicing, cytoplasm, cytoskeleton, hydrolase, membrane; HET: D71; 2.30A {Homo sapiens} PDB: 3g45_A* (A:1-324)
Probab=25.09 E-value=26 Score=15.07 Aligned_cols=15 Identities=20% Similarity=0.434 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 879999977454542
Q gi|254780891|r 13 DLVALLCSRICHDII 27 (215)
Q Consensus 13 ~laallas~IaHdlr 27 (215)
+..+++.|.++||+.
T Consensus 191 e~~alliAal~HDv~ 205 (324)
T 3g4g_A 191 EILAAIFASAIHDVD 205 (324)
T ss_dssp HHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHCCCC
T ss_conf 999999999981168
No 54
>>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp} (A:)
Probab=24.14 E-value=43 Score=13.71 Aligned_cols=25 Identities=16% Similarity=0.268 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9977454542279999999999961
Q gi|254780891|r 18 LCSRICHDIISPIGAIHNSLELLDE 42 (215)
Q Consensus 18 las~IaHdlrtPL~~I~~~~elL~~ 42 (215)
=+..+||.+.+|+.-|...+|-|..
T Consensus 18 da~qLS~qL~tP~plV~AMLerL~a 42 (87)
T 2k02_A 18 EAKQLSARLQTPQPLIDAMLERMEA 42 (87)
T ss_dssp EHHHHHHHTTCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 0999998867987899999999987
No 55
>>3itu_A CGMP-dependent 3',5'-cyclic phosphodiesterase; Zn-binding, all-alpha-helical, alternative splicing, hydrolase, membrane, polymorphism; HET: IBM; 1.58A {Homo sapiens} PDB: 3itm_A* 1z1l_A (A:1-238)
Probab=23.87 E-value=29 Score=14.83 Aligned_cols=21 Identities=33% Similarity=0.678 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q ss_conf 967687999997745454227
Q gi|254780891|r 9 LSSMDLVALLCSRICHDIISP 29 (215)
Q Consensus 9 ~~~~~laallas~IaHdlrtP 29 (215)
++..+..+++.|.++||+.-|
T Consensus 107 l~~~e~~alliAal~HD~~Hp 127 (238)
T 3itu_A 107 LEDIEIFALFISCMCHDLDHR 127 (238)
T ss_dssp SCHHHHHHHHHHHHHTTTTCC
T ss_pred CCHHHHHHHHHHHHHCCCCCC
T ss_conf 788999999999997146899
No 56
>>1bw3_A Barwin, basic barley SEED protein; lectin; NMR {Hordeum vulgare} (A:)
Probab=22.72 E-value=46 Score=13.53 Aligned_cols=38 Identities=11% Similarity=0.038 Sum_probs=28.7
Q ss_pred HHHCCCCCCCCCCCCCEEEEEEECCCCCCC----HHHHHHHH
Q ss_conf 320011111235577204799987898440----24588740
Q gi|254780891|r 131 PRGGKVTISVQDSKNENIFSLKINGNLARF----PEKFTQIV 168 (215)
Q Consensus 131 ~~gg~I~i~~~~~~~~~~i~V~D~G~Gi~~----~e~~~~~~ 168 (215)
+-|..++|+....+..+.+.|.|.+|+=.+ +..|.++-
T Consensus 62 ~CG~c~~Vt~~~~gksV~v~V~D~cp~~~iDLS~~aAf~~lg 103 (125)
T 1bw3_A 62 ACGKCLRVTNPATGAQITARIVDQCANGGLDLDWDTVFTKID 103 (125)
T ss_dssp GTTCEEEEEETTTTEEEEEEEEECCSSSSCCSCSSSSHHHHC
T ss_pred CCCCEEEEEECCCCCEEEEEEEECCCCCCCCCCCHHHHHEEC
T ss_conf 533227865326687889999750368988567076540146
No 57
>>3dyn_A High affinity CGMP-specific 3',5'-cyclic phosphodiesterase 9A; crystallography, phophodiestrase, enzyme mechanism, alternative splicing, hydrolase; HET: PCG IBM; 2.10A {Homo sapiens} (A:1-232)
Probab=22.34 E-value=44 Score=13.67 Aligned_cols=24 Identities=33% Similarity=0.642 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999967687999997745454227
Q gi|254780891|r 6 CFNLSSMDLVALLCSRICHDIISP 29 (215)
Q Consensus 6 ~~~~~~~~laallas~IaHdlrtP 29 (215)
...++..+..+++.|.++||+.-|
T Consensus 97 ~~~~~~~e~~alliAal~HDv~Hp 120 (232)
T 3dyn_A 97 QEKFSQTDILILMTAAICHDLDHP 120 (232)
T ss_dssp HHHSCHHHHHHHHHHHHHTTTTCC
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCC
T ss_conf 332898999999999998617899
No 58
>>3ecm_A High affinity CAMP-specific and IBMX-insensitive 3',5'-cyclic phosphodiesterase 8A...; phosphodiesterase 8A PDE8A inhibitor selectivity; 1.90A {Homo sapiens} PDB: 3ecn_A* (A:1-188)
Probab=22.15 E-value=32 Score=14.49 Aligned_cols=23 Identities=13% Similarity=0.329 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 74545422799999999999614
Q gi|254780891|r 21 RICHDIISPIGAIHNSLELLDEV 43 (215)
Q Consensus 21 ~IaHdlrtPL~~I~~~~elL~~~ 43 (215)
++...++-|...+..++..+...
T Consensus 45 ~l~~~~~i~~~~l~~Fl~~i~~~ 67 (188)
T 3ecm_A 45 GICEFLHCSESTLRSWLQIIEAN 67 (188)
T ss_dssp TCHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCHHHCCCCHHHHHHHHHHHHHH
T ss_conf 83763598999999999999984
No 59
>>3ibj_A CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE2A, GAF-domains, allosteric regulation, alternative splicing, hydrolase, membrane, polymorphism; 3.02A {Homo sapiens} (A:348-599)
Probab=21.83 E-value=33 Score=14.42 Aligned_cols=20 Identities=0% Similarity=-0.061 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q ss_conf 45454227999999999996
Q gi|254780891|r 22 ICHDIISPIGAIHNSLELLD 41 (215)
Q Consensus 22 IaHdlrtPL~~I~~~~elL~ 41 (215)
+.+.++=|...+..++..+.
T Consensus 68 l~~~~~i~~~~l~~Fl~~v~ 87 (252)
T 3ibj_A 68 FINNYKIDCPTLARFCLMVK 87 (252)
T ss_dssp CTTTTTCCHHHHHHHHHHHH
T ss_pred HHHHCCCCHHHHHHHHHHHH
T ss_conf 88864999999999999999
No 60
>>3hr1_A CAMP and CAMP-inhibited CGMP 3',5'-cyclic phosphodiesterase 10A; PDE 10A, PDE10 inhibitors, allosteric enzyme, alternative splicing; HET: PF9; 1.53A {Rattus norvegicus} PDB: 3hqy_A* 3hqz_A* 3hqw_A* (A:66-221)
Probab=21.52 E-value=34 Score=14.36 Aligned_cols=23 Identities=9% Similarity=0.109 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 74545422799999999999614
Q gi|254780891|r 21 RICHDIISPIGAIHNSLELLDEV 43 (215)
Q Consensus 21 ~IaHdlrtPL~~I~~~~elL~~~ 43 (215)
++...++-|...+..++..++..
T Consensus 17 ~l~~~~~i~~~~l~~fl~~v~~~ 39 (156)
T 3hr1_A 17 RSCGTSCFELEKLCRFIMSVKKN 39 (156)
T ss_dssp HHHCTTSSCHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 22254099899999999999974
No 61
>>1zkl_A HCP1, TM22, high-affinity CAMP-specific 3',5'-cyclic phosphodiesterase 7A; PDE, hydrolase; HET: IBM; 1.67A {Homo sapiens} PDB: 3g3n_A* (A:1-237)
Probab=21.36 E-value=33 Score=14.41 Aligned_cols=21 Identities=24% Similarity=0.444 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q ss_conf 967687999997745454227
Q gi|254780891|r 9 LSSMDLVALLCSRICHDIISP 29 (215)
Q Consensus 9 ~~~~~laallas~IaHdlrtP 29 (215)
++..+..+++.|.++||+.-|
T Consensus 108 l~~~e~~alliAal~HDv~Hp 128 (237)
T 1zkl_A 108 VTPWDILLSLIAAATHDLDHP 128 (237)
T ss_dssp CCHHHHHHHHHHHHHTTTTCC
T ss_pred CCHHHHHHHHHHHHHHCCCCC
T ss_conf 999999999999998026899
No 62
>>1taz_A Calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1B; PDE1B, hydrolase; HET: CME; 1.77A {Homo sapiens} (A:1-233)
Probab=20.62 E-value=36 Score=14.17 Aligned_cols=21 Identities=14% Similarity=0.183 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q ss_conf 454542279999999999961
Q gi|254780891|r 22 ICHDIISPIGAIHNSLELLDE 42 (215)
Q Consensus 22 IaHdlrtPL~~I~~~~elL~~ 42 (215)
+.+.++-+...+..++..++.
T Consensus 52 l~~~~~i~~~~l~~Fl~~v~~ 72 (233)
T 1taz_A 52 LISRFKIPTVFLMSFLDALET 72 (233)
T ss_dssp HHHHTTCCHHHHHHHHHHHHH
T ss_pred CHHHCCCCHHHHHHHHHHHHH
T ss_conf 276429899999999999998
No 63
>>1so2_A CGMP-inhibited 3',5'-cyclic phosphodiesterase B; PDE3B phosphodiesterase, hydrolase; HET: HG9 666; 2.40A {Homo sapiens} (A:1-288)
Probab=20.44 E-value=37 Score=14.13 Aligned_cols=18 Identities=17% Similarity=-0.068 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q ss_conf 234445676646876532
Q gi|254780891|r 115 RAKILLNLFMVAHASLPR 132 (215)
Q Consensus 115 ~~qvl~NLi~NA~~a~~~ 132 (215)
..+-+.+++.+++-+++.
T Consensus 225 ~~~~~~~~ii~~ILaTDm 242 (288)
T 1so2_A 225 EFKRFRFLVIEAILATDL 242 (288)
T ss_dssp HHHHHHHHHHHHHHTTCG
T ss_pred HHHHHHHHHHHHHHHCCH
T ss_conf 999999999999971464
No 64
>>1tbf_A CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5A, hydrolase; HET: VIA; 1.30A {Homo sapiens} (A:1-257)
Probab=20.04 E-value=38 Score=14.04 Aligned_cols=17 Identities=29% Similarity=0.647 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q ss_conf 76879999977454542
Q gi|254780891|r 11 SMDLVALLCSRICHDII 27 (215)
Q Consensus 11 ~~~laallas~IaHdlr 27 (215)
..+..+++.|.++||+.
T Consensus 128 ~~e~~all~Aal~HDi~ 144 (257)
T 1tbf_A 128 DLEILALLIAALSHDLD 144 (257)
T ss_dssp HHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHCCCC
T ss_conf 99999999998850569
Done!