HHsearch results for GI: 254780891 and protein with PDBid: 3a0r_A
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transferase, two-component regulatory system; 3.80A {Thermotoga maritima}
Probab=100.00 E-value=2e-38 Score=262.63 Aligned_cols=204 Identities=15% Similarity=0.105 Sum_probs=152.8
Q ss_pred HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHCC----CCHHHHHHHHHHHHHHHHHHHHHH-CCCCCCCCCCCCCC
Q ss_conf 67687999--997745454227999999999996144----301478988899999999863110-01122320000000
Q gi|254780891|r 10 SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVG----IEDEVMQLIRLSSMSAIIRLKFMR-LAFGYTGSVDSLIG 82 (215)
Q Consensus 10 ~~~~laal--las~IaHdlrtPL~~I~~~~elL~~~~----~~~~~~~~i~~~~~~~~~l~~~~r-~~~~~~~~~~~~~~ 82 (215)
+..+++++ +++.+||||||||++|.+++++|.... ...++.+.|.+.++++..+++.+. .............+
T Consensus 125 ~~e~~~~l~~~~~~iaHelrnPL~~I~~~~~~l~~~~~~~~~~~~~l~~i~~~~~rl~~li~~ll~~~~~~~~~~~~~~~ 204 (349)
T 3a0r_A 125 RRERLSILGEMTARVAHEIRNPITIIGGFIMRMKKHLDDPETLKKYINIITNELSRLETIVKEILEYSKERQVLEFTEFN 204 (349)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSCSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHCC-CEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 99999999999997655502426799999999971479979999999999999999999998899873443335667657
Q ss_pred CCH----HHHHHHHHHH-CCCCCCCCCCCC---CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEC
Q ss_conf 001----3444443220-122332110000---00100012344456766468765320011111235577204799987
Q gi|254780891|r 83 LGD----IEQVIEDFIA-VDKRVQVSWTGE---KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKIN 154 (215)
Q Consensus 83 ~~~----~~~~~~~~~~-~~~~~~~~~~~~---~~~~~~~~~qvl~NLi~NA~~a~~~gg~I~i~~~~~~~~~~i~V~D~ 154 (215)
+.+ +...++.... ++..+.++.+.+ ...++..+.|++.||+.||++|++.+|+|+|++...++.+.|.|+|+
T Consensus 205 l~~~i~~~~~~~~~~~~~~~i~l~~~~~~~~~~v~~d~~~l~qvl~NLl~NAi~~~~~~g~I~v~~~~~~~~v~i~V~D~ 284 (349)
T 3a0r_A 205 LNELIREVYVLFEEKIRKMNIDFCFETDNEDLRVEADRTRIKQVLINLVQNAIEATGENGKIKITSEDMYTKVRVSVWNS 284 (349)
T ss_dssp HHHHHHHHHHHHHHHHTTTTCCCEEEESCSCCEEEECHHHHHHHHHHHHTHHHHTTCTTCCEEEEEEEETTEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEEEECHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCEEEEEEEEC
T ss_conf 99999999999999998669189997278870899857899999999999999976799669999995354899999978
Q ss_pred CCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHH-HCCCEEEEEEECCCCEEEEEEEEC
Q ss_conf 8984402458874054545789987204999999999-709879999877992699999419
Q gi|254780891|r 155 GNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAH-ENKIRLLPEIIDDHNVVLSALLEK 215 (215)
Q Consensus 155 G~Gi~~~e~~~~~~~~~~~~~~~g~GlGl~~~~~i~~-~~gG~i~v~~~~~~g~~f~~~l~~ 215 (215)
|+||+ |+..+++|+||++++.+|+|||||+|+.|++ .|||.|++++. ++||+|+++||+
T Consensus 285 G~Gi~-~~~~~~iFepF~ttk~~GtGLGL~i~k~iv~~~hgG~i~~~s~-~~Gt~F~i~lP~ 344 (349)
T 3a0r_A 285 GPPIP-EELKEKIFSPFFTTKTQGTGLGLSICRKIIEDEHGGKIWTENR-ENGVVFIFEIPK 344 (349)
T ss_dssp SCCCC-GGGGTTTSSSCCCC------CCCTHHHHHHHHTTCSBCCEEEC-SSEEEEEEEEES
T ss_pred CCCCC-HHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEC-CCCEEEEEEECC
T ss_conf 99989-8999872699631898973557999999999848998999977-997799999359