HHSEARCH alignment of GI: 254780891 and SCOP domain: d1jm6a2

Alignment
>d1jm6a2 d.122.1.4 (A:1177-1366) Pyruvate dehydrogenase kinase {Rat (Rattus norvegicus), isozyme 2 [TaxId: 10116]}
Probab=99.92  E-value=5.9e-25  Score=175.51  Aligned_cols=107  Identities=11%  Similarity=0.035  Sum_probs=96.4

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHCC-------CCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHCCCCCCCC----
Q ss_conf             0010001234445676646876532001-------11112355772047999878984402458874054545789----
Q gi|254780891|r  108 KIDLSRERAKILLNLFMVAHASLPRGGK-------VTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI----  176 (215)
Q Consensus       108 ~~~~~~~~~qvl~NLi~NA~~a~~~gg~-------I~i~~~~~~~~~~i~V~D~G~Gi~~~e~~~~~~~~~~~~~~----  176 (215)
                      ...++..+.|++.||+.||++|++.++.       |.|++...++.+.|+|+|+|+||+ ++.+.++|++|++++.    
T Consensus        54 ~~~d~~~l~qvl~NLl~NA~~~~~~~~~~~~~~~~I~v~~~~~~~~~~i~V~D~G~GI~-~~~~~~iF~~f~~~~~~~~~  132 (190)
T d1jm6a2          54 MVYVPSHLYHMLFELFKNAMRATVESHESSLTLPPIKIMVALGEEDLSIKMSDRGGGVP-LRKIERLFSYMYSTAPTPQP  132 (190)
T ss_dssp             EEECHHHHHHHHHHHHHHHHHHHHHHCSCTTSCCCEEEEEEECSSEEEEEEEECSCCCC-GGGTTGGGCTTCCCSCCC--
T ss_pred             EEECHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCEEEEEEEECCCCCCC-HHHHHHHHCCCEECCCCCCC
T ss_conf             99879999999999999999972526864432431899998177089999901699998-99999985756256776767


Q ss_pred             -------CCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEEC
Q ss_conf             -------987204999999999709879999877992699999419
Q gi|254780891|r  177 -------DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK  215 (215)
Q Consensus       177 -------~g~GlGl~~~~~i~~~~gG~i~v~~~~~~g~~f~~~l~~  215 (215)
                             .|+|||||+|+.+++.|||+|+++|.+++|++|+++||+
T Consensus       133 ~~~~~~~~G~GLGL~i~k~ive~hgG~I~v~s~~g~Gt~f~i~lP~  178 (190)
T d1jm6a2         133 GTGGTPLAGFGYGLPISRLYAKYFQGDLQLFSMEGFGTDAVIYLKA  178 (190)
T ss_dssp             -------CCSSCHHHHHHHHHHHTTCEEEEEEETTTEEEEEEEEES
T ss_pred             CCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCEEEEEEEEC
T ss_conf             5544344888752999999999879989999549995499999858


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
superfamily: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
family: alpha-ketoacid dehydrogenase kinase, C-terminal domain
domain: Pyruvate dehydrogenase kinase
species: Rat (Rattus norvegicus), isozyme 2 [TaxId: 10116]