HHSEARCH alignment of GI: 254780891 and SCOP domain: d1kija2

Alignment
>d1kija2 d.122.1.2 (A:9-220) DNA gyrase B {Thermus thermophilus [TaxId: 274]}
Probab=95.83  E-value=0.015  Score=33.23  Aligned_cols=85  Identities=12%  Similarity=0.167  Sum_probs=52.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH--CCCCCCCCCCCCCEEEEEEECCCCCCCH----------HH-HHHHHCC------CCC
Q ss_conf             012344456766468765320--0111112355772047999878984402----------45-8874054------545
Q gi|254780891|r  113 RERAKILLNLFMVAHASLPRG--GKVTISVQDSKNENIFSLKINGNLARFP----------EK-FTQIVDG------NVE  173 (215)
Q Consensus       113 ~~~~qvl~NLi~NA~~a~~~g--g~I~i~~~~~~~~~~i~V~D~G~Gi~~~----------e~-~~~~~~~------~~~  173 (215)
                      .-+.+++.-++.||++..-.+  ..|.+.+..++   .|+|+|+|.||+.+          |. |..+..+      .+.
T Consensus        25 ~Gl~~l~~Eil~Na~De~~~~~~~~i~v~~~~dg---~i~V~ddG~GIpv~~h~~~~~~~~e~if~~l~~~~~~d~~~~~  101 (212)
T d1kija2          25 EGYHHLFKEILDNAVDEALAGYATEILVRLNEDG---SLTVEDNGRGIPVDLMPEEGKPAVEVIYNTLHSGGKFEQGAYK  101 (212)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTSCCEEEEEECTTS---CEEEEECSSCCCCSEETTTTEEHHHHHHHSSCEESGGGGSSCC
T ss_pred             CCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCC---CEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCE
T ss_conf             5156554644433410002037864888990898---0999988843120111346960479999887034566677733


Q ss_pred             CCCCCCCHHHHHHHHHHHHCCCEEEEEEECC
Q ss_conf             7899872049999999997098799998779
Q gi|254780891|r  174 STIDSHDIQFYYVILLAHENKIRLLPEIIDD  204 (215)
Q Consensus       174 ~~~~g~GlGl~~~~~i~~~~gG~i~v~~~~~  204 (215)
                      .....+|+|+.++--+.+    .+.|+...+
T Consensus       102 ~sgG~hGvGa~vvNalS~----~~~v~v~r~  128 (212)
T d1kija2         102 VSGGLHGVGASVVNALSE----WTVVEVFRE  128 (212)
T ss_dssp             CCSCSSTTSHHHHHHTEE----EEEEEEEET
T ss_pred             ECCCCCCCCCEEEEEECC----CEEEEEEEE
T ss_conf             237776534347899636----129999991


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
superfamily: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
family: DNA gyrase/MutL, N-terminal domain
domain: DNA gyrase B
species: Thermus thermophilus [TaxId: 274]