HHSEARCH alignment of GI: 254780891 and SCOP domain: d1r62a_

Alignment
>d1r62a_ d.122.1.3 (A:) Nitrogen regulation protein NtrB, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=99.91  E-value=1.1e-24  Score=173.82  Aligned_cols=128  Identities=12%  Similarity=0.071  Sum_probs=100.8

Q ss_pred             HHHHHHHHHHHCCCCCCCCCCCC---CCCCCHHHHHHHHHHHHHHHHHHHHHCC-----------CCCCCCCCCCCEEEE
Q ss_conf             13444443220122332110000---0010001234445676646876532001-----------111123557720479
Q gi|254780891|r   85 DIEQVIEDFIAVDKRVQVSWTGE---KIDLSRERAKILLNLFMVAHASLPRGGK-----------VTISVQDSKNENIFS  150 (215)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~qvl~NLi~NA~~a~~~gg~-----------I~i~~~~~~~~~~i~  150 (215)
                      ++..++......+.++..+.+.+   ...++..+.|+|.||+.||++|++.++.           +.+.....+..+.|.
T Consensus        12 ~v~~l~~~~~~~~i~i~~~~~~~~~~v~~D~~~l~qvl~NLl~NA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~   91 (156)
T d1r62a_          12 RVVTLVSMELPDNVRLIRDYDPSLPELAHDPDQIEQVLLNIVRNALQALGPEGGEIILRTRTAFQLTLHGERYRLAARID   91 (156)
T ss_dssp             HHHHHHTTTCCTTEEEEEECCTTCCCEEECHHHHHHHHHHHHHHHHHHHGGGCEEEEEEEEEEEEEEETTEEEEEEEEEE
T ss_pred             HHHHHHHHHCCCCCEEEEECCCCCCEEEECHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCEEEECCCCCCCEEEEE
T ss_conf             99999998766998999984999977998899999999999999998634389722200011320210012578558999


Q ss_pred             EEECCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEE
Q ss_conf             9987898440245887405454578998720499999999970987999987799269999941
Q gi|254780891|r  151 LKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE  214 (215)
Q Consensus       151 V~D~G~Gi~~~e~~~~~~~~~~~~~~~g~GlGl~~~~~i~~~~gG~i~v~~~~~~g~~f~~~l~  214 (215)
                      |+|+|+||+ ++..+++|+||++++..|+|||||+|+.+++.|||+|+++|.++ |++|++.||
T Consensus        92 v~D~G~Gi~-~~~~~~iF~pf~s~k~~G~GLGL~i~~~iv~~hgG~i~v~s~~g-Gt~f~i~LP  153 (156)
T d1r62a_          92 VEDNGPGIP-PHLQDTLFYPMVSGREGGTGLGLSIARNLIDQHSGKIEFTSWPG-HTEFSVYLP  153 (156)
T ss_dssp             EEEECTTC---------------------CHHHHHHHHHHHHTTCEEEEEEETT-EEEEEEEEE
T ss_pred             EECCCCCCC-HHHHHHHCCCCEECCCCCCCCHHHHHHHHHHHCCCEEEEEEECC-CEEEEEEEE
T ss_conf             813789989-89997516563023789998438999999998799899999599-589999999


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
superfamily: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
family: Histidine kinase
domain: Nitrogen regulation protein NtrB, C-terminal domain
species: Escherichia coli [TaxId: 562]